Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24090

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsolA and bssS are separated by 114 nucleotidesbssS and dinI are separated by 289 nucleotidesdinI and pyrC are separated by 73 nucleotides NIAGMN_24085: solA - N-methyl-L-tryptophan oxidase, at 4,712,351 to 4,713,469 solA NIAGMN_24090: bssS - biofilm formation regulator BssS, at 4,713,584 to 4,713,838 bssS NIAGMN_24095: dinI - DNA damage-inducible protein I, at 4,714,128 to 4,714,373 dinI NIAGMN_24100: pyrC - dihydroorotase, at 4,714,447 to 4,715,493 pyrC Position (kb) 4713 4714Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4712.586 kb on - strand, within solAat 4712.725 kb on - strand, within solAat 4712.727 kb on + strand, within solAat 4712.771 kb on - strand, within solAat 4712.813 kb on + strand, within solAat 4712.924 kb on + strand, within solAat 4713.310 kb on - strand, within solAat 4713.503 kb on + strandat 4713.503 kb on + strandat 4713.524 kb on - strandat 4713.648 kb on - strand, within bssSat 4713.648 kb on - strand, within bssSat 4713.648 kb on - strand, within bssSat 4713.769 kb on - strand, within bssSat 4713.769 kb on - strand, within bssSat 4713.773 kb on - strand, within bssSat 4713.798 kb on - strand, within bssSat 4713.798 kb on - strand, within bssSat 4713.860 kb on - strandat 4713.863 kb on - strandat 4713.895 kb on - strandat 4713.924 kb on + strandat 4714.127 kb on - strandat 4714.422 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,712,586 - solA NIAGMN_24085 0.21 +1.6
4,712,725 - solA NIAGMN_24085 0.33 -0.6
4,712,727 + solA NIAGMN_24085 0.34 -0.4
4,712,771 - solA NIAGMN_24085 0.38 +0.6
4,712,813 + solA NIAGMN_24085 0.41 +0.6
4,712,924 + solA NIAGMN_24085 0.51 -0.1
4,713,310 - solA NIAGMN_24085 0.86 -0.2
4,713,503 + +1.0
4,713,503 + +0.7
4,713,524 - -0.6
4,713,648 - bssS NIAGMN_24090 0.25 +1.4
4,713,648 - bssS NIAGMN_24090 0.25 +0.8
4,713,648 - bssS NIAGMN_24090 0.25 +2.9
4,713,769 - bssS NIAGMN_24090 0.73 +1.0
4,713,769 - bssS NIAGMN_24090 0.73 +1.2
4,713,773 - bssS NIAGMN_24090 0.74 -2.4
4,713,798 - bssS NIAGMN_24090 0.84 +0.1
4,713,798 - bssS NIAGMN_24090 0.84 +0.8
4,713,860 - +1.5
4,713,863 - +0.5
4,713,895 - +0.3
4,713,924 + +0.9
4,714,127 - +1.9
4,714,422 + -1.6

Or see this region's nucleotide sequence