Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24080

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyceI and yceJ are separated by 3 nucleotidesyceJ and yceO are separated by 260 nucleotidesyceO and solA are separated by 47 nucleotides NIAGMN_24070: yceI - YceI family protein, at 4,710,784 to 4,711,359 yceI NIAGMN_24075: yceJ - Cytochrome b561-like protein, at 4,711,363 to 4,711,929 yceJ NIAGMN_24080: yceO - Uncharacterized protein YceO, at 4,712,190 to 4,712,303 yceO NIAGMN_24085: solA - N-methyl-L-tryptophan oxidase, at 4,712,351 to 4,713,469 solA Position (kb) 4712 4713Strain fitness (log2 ratio) -1 0 1at 4711.217 kb on - strand, within yceIat 4711.447 kb on - strand, within yceJat 4711.459 kb on - strand, within yceJat 4711.468 kb on + strand, within yceJat 4711.468 kb on + strand, within yceJat 4711.604 kb on + strand, within yceJat 4711.638 kb on - strand, within yceJat 4711.773 kb on + strand, within yceJat 4711.809 kb on - strand, within yceJat 4712.274 kb on - strand, within yceOat 4712.317 kb on - strandat 4712.586 kb on - strand, within solAat 4712.725 kb on - strand, within solAat 4712.727 kb on + strand, within solAat 4712.771 kb on - strand, within solAat 4712.813 kb on + strand, within solAat 4712.924 kb on + strand, within solA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
4,711,217 - yceI NIAGMN_24070 0.75 +0.3
4,711,447 - yceJ NIAGMN_24075 0.15 +0.3
4,711,459 - yceJ NIAGMN_24075 0.17 -0.4
4,711,468 + yceJ NIAGMN_24075 0.19 +1.0
4,711,468 + yceJ NIAGMN_24075 0.19 -0.2
4,711,604 + yceJ NIAGMN_24075 0.43 +0.1
4,711,638 - yceJ NIAGMN_24075 0.49 -0.5
4,711,773 + yceJ NIAGMN_24075 0.72 +1.2
4,711,809 - yceJ NIAGMN_24075 0.79 -0.8
4,712,274 - yceO NIAGMN_24080 0.74 +0.7
4,712,317 - +1.0
4,712,586 - solA NIAGMN_24085 0.21 +1.6
4,712,725 - solA NIAGMN_24085 0.33 -0.6
4,712,727 + solA NIAGMN_24085 0.34 -0.4
4,712,771 - solA NIAGMN_24085 0.38 +0.6
4,712,813 + solA NIAGMN_24085 0.41 +0.6
4,712,924 + solA NIAGMN_24085 0.51 -0.1

Or see this region's nucleotide sequence