Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trhO and yceI are separated by 41 nucleotides yceI and yceJ are separated by 3 nucleotides yceJ and yceO are separated by 260 nucleotides yceO and solA are separated by 47 nucleotides
NIAGMN_24065: trhO - rhodanese-related sulfurtransferase, at 4,709,690 to 4,710,742
trhO
NIAGMN_24070: yceI - YceI family protein, at 4,710,784 to 4,711,359
yceI
NIAGMN_24075: yceJ - Cytochrome b561-like protein, at 4,711,363 to 4,711,929
yceJ
NIAGMN_24080: yceO - Uncharacterized protein YceO, at 4,712,190 to 4,712,303
yceO
NIAGMN_24085: solA - N-methyl-L-tryptophan oxidase, at 4,712,351 to 4,713,469
solA
Position (kb) 4711
4712 Strain fitness (log2 ratio) -1
0
1 at 4710.463 kb on + strand, within trhO at 4710.676 kb on + strand at 4710.685 kb on + strand at 4710.688 kb on + strand at 4710.709 kb on + strand at 4710.709 kb on + strand at 4710.744 kb on + strand at 4710.744 kb on + strand at 4710.744 kb on + strand at 4711.217 kb on - strand, within yceI at 4711.447 kb on - strand, within yceJ at 4711.459 kb on - strand, within yceJ at 4711.468 kb on + strand, within yceJ at 4711.468 kb on + strand, within yceJ at 4711.604 kb on + strand, within yceJ at 4711.638 kb on - strand, within yceJ at 4711.773 kb on + strand, within yceJ at 4711.809 kb on - strand, within yceJ at 4712.274 kb on - strand, within yceO at 4712.317 kb on - strand at 4712.586 kb on - strand, within solA at 4712.725 kb on - strand, within solA at 4712.727 kb on + strand, within solA at 4712.771 kb on - strand, within solA at 4712.813 kb on + strand, within solA at 4712.924 kb on + strand, within solA
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,710,463 + trhO NIAGMN_24065 0.73 -0.3 4,710,676 + -0.7 4,710,685 + +0.7 4,710,688 + -0.4 4,710,709 + -1.0 4,710,709 + +1.0 4,710,744 + -1.1 4,710,744 + -0.3 4,710,744 + +0.6 4,711,217 - yceI NIAGMN_24070 0.75 +0.3 4,711,447 - yceJ NIAGMN_24075 0.15 +0.3 4,711,459 - yceJ NIAGMN_24075 0.17 -0.4 4,711,468 + yceJ NIAGMN_24075 0.19 +1.0 4,711,468 + yceJ NIAGMN_24075 0.19 -0.2 4,711,604 + yceJ NIAGMN_24075 0.43 +0.1 4,711,638 - yceJ NIAGMN_24075 0.49 -0.5 4,711,773 + yceJ NIAGMN_24075 0.72 +1.2 4,711,809 - yceJ NIAGMN_24075 0.79 -0.8 4,712,274 - yceO NIAGMN_24080 0.74 +0.7 4,712,317 - +1.0 4,712,586 - solA NIAGMN_24085 0.21 +1.6 4,712,725 - solA NIAGMN_24085 0.33 -0.6 4,712,727 + solA NIAGMN_24085 0.34 -0.4 4,712,771 - solA NIAGMN_24085 0.38 +0.6 4,712,813 + solA NIAGMN_24085 0.41 +0.6 4,712,924 + solA NIAGMN_24085 0.51 -0.1
Or see this region's nucleotide sequence