Strain Fitness in Escherichia coli ECRC102 around NIAGMN_23915

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntNIAGMN_23905 and lolD are separated by 10 nucleotideslolD and NIAGMN_23915 overlap by 17 nucleotidesNIAGMN_23915 and lolE are separated by 0 nucleotides NIAGMN_23905: NIAGMN_23905 - ATP-binding protein, at 4,682,512 to 4,683,465 _23905 NIAGMN_23910: lolD - lipoprotein-releasing system ATP-binding protein LolD, at 4,683,476 to 4,684,183 lolD NIAGMN_23915: NIAGMN_23915 - Uncharacterized function, at 4,684,167 to 4,684,823 _23915 NIAGMN_23920: lolE - ABC transporter permease, at 4,684,824 to 4,686,134 lolE Position (kb) 4684 4685Strain fitness (log2 ratio) -2 -1 0 1 2at 4683.485 kb on - strandat 4683.485 kb on - strandat 4684.537 kb on - strand, within NIAGMN_23915at 4684.755 kb on - strand, within NIAGMN_23915

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
4,683,485 - +1.8
4,683,485 - -1.9
4,684,537 - NIAGMN_23915 0.56 -0.5
4,684,755 - NIAGMN_23915 0.89 +1.8

Or see this region's nucleotide sequence