Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fabB and NIAGMN_23905 overlap by 4 nucleotides NIAGMN_23905 and lolD are separated by 10 nucleotides lolD and NIAGMN_23915 overlap by 17 nucleotides NIAGMN_23915 and lolE are separated by 0 nucleotides
NIAGMN_23900: fabB - beta-ketoacyl synthase, at 4,681,292 to 4,682,515
fabB
NIAGMN_23905: NIAGMN_23905 - ATP-binding protein, at 4,682,512 to 4,683,465
_23905
NIAGMN_23910: lolD - lipoprotein-releasing system ATP-binding protein LolD, at 4,683,476 to 4,684,183
lolD
NIAGMN_23915: NIAGMN_23915 - Uncharacterized function, at 4,684,167 to 4,684,823
_23915
NIAGMN_23920: lolE - ABC transporter permease, at 4,684,824 to 4,686,134
lolE
Position (kb)
4683
4684
4685 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4682.491 kb on + strand at 4682.531 kb on - strand at 4682.579 kb on - strand at 4682.613 kb on + strand, within NIAGMN_23905 at 4682.614 kb on - strand, within NIAGMN_23905 at 4682.618 kb on - strand, within NIAGMN_23905 at 4682.720 kb on - strand, within NIAGMN_23905 at 4682.722 kb on - strand, within NIAGMN_23905 at 4683.485 kb on - strand at 4683.485 kb on - strand at 4684.537 kb on - strand, within NIAGMN_23915 at 4684.755 kb on - strand, within NIAGMN_23915
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,682,491 + +0.9 4,682,531 - +0.6 4,682,579 - +2.7 4,682,613 + NIAGMN_23905 0.11 -1.4 4,682,614 - NIAGMN_23905 0.11 +0.2 4,682,618 - NIAGMN_23905 0.11 -0.2 4,682,720 - NIAGMN_23905 0.22 -0.7 4,682,722 - NIAGMN_23905 0.22 -0.7 4,683,485 - +1.8 4,683,485 - -1.9 4,684,537 - NIAGMN_23915 0.56 -0.5 4,684,755 - NIAGMN_23915 0.89 +1.8
Or see this region's nucleotide sequence