Strain Fitness in Escherichia coli ECRC102 around NIAGMN_23900

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfabB and fabB are separated by 4 nucleotidesfabB and NIAGMN_23905 overlap by 4 nucleotidesNIAGMN_23905 and lolD are separated by 10 nucleotides NIAGMN_23895: fabB - beta-ketoacyl-ACP synthase, at 4,678,729 to 4,681,287 fabB NIAGMN_23900: fabB - beta-ketoacyl synthase, at 4,681,292 to 4,682,515 fabB NIAGMN_23905: NIAGMN_23905 - ATP-binding protein, at 4,682,512 to 4,683,465 _23905 NIAGMN_23910: lolD - lipoprotein-releasing system ATP-binding protein LolD, at 4,683,476 to 4,684,183 lolD Position (kb) 4681 4682 4683Strain fitness (log2 ratio) -2 -1 0 1 2at 4680.406 kb on + strand, within fabBat 4680.413 kb on - strand, within fabBat 4680.523 kb on + strand, within fabBat 4680.526 kb on - strand, within fabBat 4680.574 kb on + strand, within fabBat 4680.658 kb on + strand, within fabBat 4680.661 kb on - strand, within fabBat 4681.016 kb on - strand, within fabBat 4681.060 kb on + strandat 4681.397 kb on - strandat 4681.733 kb on + strand, within fabBat 4682.046 kb on - strand, within fabBat 4682.258 kb on + strand, within fabBat 4682.491 kb on + strandat 4682.531 kb on - strandat 4682.579 kb on - strandat 4682.613 kb on + strand, within NIAGMN_23905at 4682.614 kb on - strand, within NIAGMN_23905at 4682.618 kb on - strand, within NIAGMN_23905at 4682.720 kb on - strand, within NIAGMN_23905at 4682.722 kb on - strand, within NIAGMN_23905at 4683.485 kb on - strandat 4683.485 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,680,406 + fabB NIAGMN_23895 0.66 -0.7
4,680,413 - fabB NIAGMN_23895 0.66 +0.8
4,680,523 + fabB NIAGMN_23895 0.70 +1.2
4,680,526 - fabB NIAGMN_23895 0.70 +0.6
4,680,574 + fabB NIAGMN_23895 0.72 +0.2
4,680,658 + fabB NIAGMN_23895 0.75 -0.4
4,680,661 - fabB NIAGMN_23895 0.75 -2.1
4,681,016 - fabB NIAGMN_23895 0.89 +0.2
4,681,060 + +0.6
4,681,397 - +0.3
4,681,733 + fabB NIAGMN_23900 0.36 +0.5
4,682,046 - fabB NIAGMN_23900 0.62 -0.8
4,682,258 + fabB NIAGMN_23900 0.79 +0.6
4,682,491 + +0.9
4,682,531 - +0.6
4,682,579 - +2.7
4,682,613 + NIAGMN_23905 0.11 -1.4
4,682,614 - NIAGMN_23905 0.11 +0.2
4,682,618 - NIAGMN_23905 0.11 -0.2
4,682,720 - NIAGMN_23905 0.22 -0.7
4,682,722 - NIAGMN_23905 0.22 -0.7
4,683,485 - +1.8
4,683,485 - -1.9

Or see this region's nucleotide sequence