Strain Fitness in Escherichia coli ECRC102 around NIAGMN_23895

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgcvT and fabB are separated by 73 nucleotidesfabB and fabB are separated by 4 nucleotides NIAGMN_23890: gcvT - aminomethyltransferase, at 4,677,495 to 4,678,655 gcvT NIAGMN_23895: fabB - beta-ketoacyl-ACP synthase, at 4,678,729 to 4,681,287 fabB NIAGMN_23900: fabB - beta-ketoacyl synthase, at 4,681,292 to 4,682,515 fabB Position (kb) 4678 4679 4680 4681 4682Strain fitness (log2 ratio) -2 -1 0 1 2at 4678.074 kb on + strand, within gcvTat 4678.080 kb on + strand, within gcvTat 4678.334 kb on + strand, within gcvTat 4678.497 kb on + strand, within gcvTat 4678.676 kb on + strandat 4678.725 kb on - strandat 4678.909 kb on + strandat 4679.251 kb on + strand, within fabBat 4679.252 kb on - strand, within fabBat 4679.305 kb on + strand, within fabBat 4679.305 kb on + strand, within fabBat 4679.306 kb on - strand, within fabBat 4679.428 kb on + strand, within fabBat 4679.833 kb on + strand, within fabBat 4680.184 kb on - strand, within fabBat 4680.271 kb on - strand, within fabBat 4680.406 kb on + strand, within fabBat 4680.413 kb on - strand, within fabBat 4680.523 kb on + strand, within fabBat 4680.526 kb on - strand, within fabBat 4680.574 kb on + strand, within fabBat 4680.658 kb on + strand, within fabBat 4680.661 kb on - strand, within fabBat 4681.016 kb on - strand, within fabBat 4681.060 kb on + strandat 4681.397 kb on - strandat 4681.733 kb on + strand, within fabBat 4682.046 kb on - strand, within fabBat 4682.258 kb on + strand, within fabB

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,678,074 + gcvT NIAGMN_23890 0.50 +1.4
4,678,080 + gcvT NIAGMN_23890 0.50 +0.1
4,678,334 + gcvT NIAGMN_23890 0.72 +0.9
4,678,497 + gcvT NIAGMN_23890 0.86 -2.2
4,678,676 + +0.9
4,678,725 - +0.1
4,678,909 + +0.4
4,679,251 + fabB NIAGMN_23895 0.20 +2.4
4,679,252 - fabB NIAGMN_23895 0.20 -0.3
4,679,305 + fabB NIAGMN_23895 0.23 -1.4
4,679,305 + fabB NIAGMN_23895 0.23 +0.8
4,679,306 - fabB NIAGMN_23895 0.23 +0.4
4,679,428 + fabB NIAGMN_23895 0.27 -1.0
4,679,833 + fabB NIAGMN_23895 0.43 +0.1
4,680,184 - fabB NIAGMN_23895 0.57 +2.4
4,680,271 - fabB NIAGMN_23895 0.60 -0.6
4,680,406 + fabB NIAGMN_23895 0.66 -0.7
4,680,413 - fabB NIAGMN_23895 0.66 +0.8
4,680,523 + fabB NIAGMN_23895 0.70 +1.2
4,680,526 - fabB NIAGMN_23895 0.70 +0.6
4,680,574 + fabB NIAGMN_23895 0.72 +0.2
4,680,658 + fabB NIAGMN_23895 0.75 -0.4
4,680,661 - fabB NIAGMN_23895 0.75 -2.1
4,681,016 - fabB NIAGMN_23895 0.89 +0.2
4,681,060 + +0.6
4,681,397 - +0.3
4,681,733 + fabB NIAGMN_23900 0.36 +0.5
4,682,046 - fabB NIAGMN_23900 0.62 -0.8
4,682,258 + fabB NIAGMN_23900 0.79 +0.6

Or see this region's nucleotide sequence