Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gcvT and fabB are separated by 73 nucleotides fabB and fabB are separated by 4 nucleotides
NIAGMN_23890: gcvT - aminomethyltransferase, at 4,677,495 to 4,678,655
gcvT
NIAGMN_23895: fabB - beta-ketoacyl-ACP synthase, at 4,678,729 to 4,681,287
fabB
NIAGMN_23900: fabB - beta-ketoacyl synthase, at 4,681,292 to 4,682,515
fabB
Position (kb)
4678
4679
4680
4681
4682 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4678.074 kb on + strand, within gcvT at 4678.080 kb on + strand, within gcvT at 4678.334 kb on + strand, within gcvT at 4678.497 kb on + strand, within gcvT at 4678.676 kb on + strand at 4678.725 kb on - strand at 4678.909 kb on + strand at 4679.251 kb on + strand, within fabB at 4679.252 kb on - strand, within fabB at 4679.305 kb on + strand, within fabB at 4679.305 kb on + strand, within fabB at 4679.306 kb on - strand, within fabB at 4679.428 kb on + strand, within fabB at 4679.833 kb on + strand, within fabB at 4680.184 kb on - strand, within fabB at 4680.271 kb on - strand, within fabB at 4680.406 kb on + strand, within fabB at 4680.413 kb on - strand, within fabB at 4680.523 kb on + strand, within fabB at 4680.526 kb on - strand, within fabB at 4680.574 kb on + strand, within fabB at 4680.658 kb on + strand, within fabB at 4680.661 kb on - strand, within fabB at 4681.016 kb on - strand, within fabB at 4681.060 kb on + strand at 4681.397 kb on - strand at 4681.733 kb on + strand, within fabB at 4682.046 kb on - strand, within fabB at 4682.258 kb on + strand, within fabB
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,678,074 + gcvT NIAGMN_23890 0.50 +1.4 4,678,080 + gcvT NIAGMN_23890 0.50 +0.1 4,678,334 + gcvT NIAGMN_23890 0.72 +0.9 4,678,497 + gcvT NIAGMN_23890 0.86 -2.2 4,678,676 + +0.9 4,678,725 - +0.1 4,678,909 + +0.4 4,679,251 + fabB NIAGMN_23895 0.20 +2.4 4,679,252 - fabB NIAGMN_23895 0.20 -0.3 4,679,305 + fabB NIAGMN_23895 0.23 -1.4 4,679,305 + fabB NIAGMN_23895 0.23 +0.8 4,679,306 - fabB NIAGMN_23895 0.23 +0.4 4,679,428 + fabB NIAGMN_23895 0.27 -1.0 4,679,833 + fabB NIAGMN_23895 0.43 +0.1 4,680,184 - fabB NIAGMN_23895 0.57 +2.4 4,680,271 - fabB NIAGMN_23895 0.60 -0.6 4,680,406 + fabB NIAGMN_23895 0.66 -0.7 4,680,413 - fabB NIAGMN_23895 0.66 +0.8 4,680,523 + fabB NIAGMN_23895 0.70 +1.2 4,680,526 - fabB NIAGMN_23895 0.70 +0.6 4,680,574 + fabB NIAGMN_23895 0.72 +0.2 4,680,658 + fabB NIAGMN_23895 0.75 -0.4 4,680,661 - fabB NIAGMN_23895 0.75 -2.1 4,681,016 - fabB NIAGMN_23895 0.89 +0.2 4,681,060 + +0.6 4,681,397 - +0.3 4,681,733 + fabB NIAGMN_23900 0.36 +0.5 4,682,046 - fabB NIAGMN_23900 0.62 -0.8 4,682,258 + fabB NIAGMN_23900 0.79 +0.6
Or see this region's nucleotide sequence