Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt putA and NIAGMN_23735 are separated by 54 nucleotides NIAGMN_23735 and putP are separated by 158 nucleotides putP and NIAGMN_23745 are separated by 148 nucleotides
NIAGMN_23730: putA - trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase, at 4,635,731 to 4,639,693
putA
NIAGMN_23735: NIAGMN_23735 - hypothetical protein, at 4,639,748 to 4,639,957
_23735
NIAGMN_23740: putP - sodium/proline symporter PutP, at 4,640,116 to 4,641,624
putP
NIAGMN_23745: NIAGMN_23745 - hypothetical protein, at 4,641,773 to 4,643,116
_23745
Position (kb) 4640
4641
4642 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4639.309 kb on - strand at 4639.640 kb on - strand at 4639.801 kb on - strand, within NIAGMN_23735 at 4639.846 kb on + strand, within NIAGMN_23735 at 4639.956 kb on - strand at 4640.036 kb on + strand at 4640.066 kb on + strand at 4640.113 kb on + strand at 4640.124 kb on + strand at 4640.157 kb on + strand at 4640.220 kb on + strand at 4640.220 kb on + strand at 4640.236 kb on - strand at 4640.236 kb on - strand at 4640.496 kb on + strand, within putP at 4640.533 kb on + strand, within putP at 4640.533 kb on + strand, within putP at 4640.635 kb on + strand, within putP at 4640.857 kb on + strand, within putP at 4640.931 kb on + strand, within putP at 4640.998 kb on + strand, within putP at 4640.998 kb on + strand, within putP at 4640.999 kb on - strand, within putP at 4641.140 kb on + strand, within putP at 4641.140 kb on + strand, within putP at 4641.158 kb on + strand, within putP at 4641.158 kb on + strand, within putP at 4641.204 kb on + strand, within putP at 4641.204 kb on + strand, within putP at 4641.322 kb on + strand, within putP at 4641.322 kb on + strand, within putP at 4641.515 kb on + strand at 4641.515 kb on + strand at 4641.586 kb on + strand at 4641.586 kb on + strand at 4641.634 kb on + strand at 4641.638 kb on + strand at 4641.642 kb on + strand at 4641.720 kb on + strand at 4641.774 kb on + strand at 4641.805 kb on - strand at 4641.926 kb on - strand, within NIAGMN_23745 at 4641.986 kb on + strand, within NIAGMN_23745 at 4641.986 kb on + strand, within NIAGMN_23745 at 4641.987 kb on - strand, within NIAGMN_23745 at 4641.987 kb on - strand, within NIAGMN_23745 at 4642.075 kb on - strand, within NIAGMN_23745 at 4642.088 kb on - strand, within NIAGMN_23745 at 4642.178 kb on - strand, within NIAGMN_23745 at 4642.217 kb on + strand, within NIAGMN_23745 at 4642.261 kb on - strand, within NIAGMN_23745 at 4642.297 kb on + strand, within NIAGMN_23745 at 4642.298 kb on - strand, within NIAGMN_23745 at 4642.386 kb on + strand, within NIAGMN_23745 at 4642.387 kb on - strand, within NIAGMN_23745 at 4642.387 kb on - strand, within NIAGMN_23745 at 4642.443 kb on - strand, within NIAGMN_23745
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,639,309 - -0.2 4,639,640 - -1.3 4,639,801 - NIAGMN_23735 0.25 -3.2 4,639,846 + NIAGMN_23735 0.47 -0.5 4,639,956 - +0.5 4,640,036 + +0.2 4,640,066 + -0.2 4,640,113 + +1.9 4,640,124 + -0.9 4,640,157 + +0.9 4,640,220 + -0.3 4,640,220 + -0.3 4,640,236 - +2.2 4,640,236 - -1.3 4,640,496 + putP NIAGMN_23740 0.25 +0.7 4,640,533 + putP NIAGMN_23740 0.28 +1.4 4,640,533 + putP NIAGMN_23740 0.28 -0.6 4,640,635 + putP NIAGMN_23740 0.34 -0.5 4,640,857 + putP NIAGMN_23740 0.49 -1.9 4,640,931 + putP NIAGMN_23740 0.54 +1.0 4,640,998 + putP NIAGMN_23740 0.58 +0.4 4,640,998 + putP NIAGMN_23740 0.58 +0.9 4,640,999 - putP NIAGMN_23740 0.59 -0.2 4,641,140 + putP NIAGMN_23740 0.68 +0.7 4,641,140 + putP NIAGMN_23740 0.68 -0.8 4,641,158 + putP NIAGMN_23740 0.69 +0.4 4,641,158 + putP NIAGMN_23740 0.69 +1.4 4,641,204 + putP NIAGMN_23740 0.72 -2.0 4,641,204 + putP NIAGMN_23740 0.72 +0.4 4,641,322 + putP NIAGMN_23740 0.80 -0.7 4,641,322 + putP NIAGMN_23740 0.80 +0.4 4,641,515 + +2.4 4,641,515 + +0.3 4,641,586 + -0.7 4,641,586 + -1.5 4,641,634 + +3.6 4,641,638 + +0.6 4,641,642 + +2.7 4,641,720 + +0.0 4,641,774 + -2.4 4,641,805 - -1.6 4,641,926 - NIAGMN_23745 0.11 +0.3 4,641,986 + NIAGMN_23745 0.16 +0.4 4,641,986 + NIAGMN_23745 0.16 -0.9 4,641,987 - NIAGMN_23745 0.16 +0.2 4,641,987 - NIAGMN_23745 0.16 -1.4 4,642,075 - NIAGMN_23745 0.22 +1.4 4,642,088 - NIAGMN_23745 0.23 +0.6 4,642,178 - NIAGMN_23745 0.30 -2.3 4,642,217 + NIAGMN_23745 0.33 +1.1 4,642,261 - NIAGMN_23745 0.36 -0.6 4,642,297 + NIAGMN_23745 0.39 +0.7 4,642,298 - NIAGMN_23745 0.39 -0.2 4,642,386 + NIAGMN_23745 0.46 +1.2 4,642,387 - NIAGMN_23745 0.46 -2.3 4,642,387 - NIAGMN_23745 0.46 +0.2 4,642,443 - NIAGMN_23745 0.50 +0.0
Or see this region's nucleotide sequence