Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_23655 and NIAGMN_23660 are separated by 20 nucleotides NIAGMN_23660 and NIAGMN_23665 overlap by 14 nucleotides NIAGMN_23665 and dksA overlap by 4 nucleotides dksA and NIAGMN_23675 are separated by 47 nucleotides NIAGMN_23675 and NIAGMN_23685 are separated by 958 nucleotides
NIAGMN_23655: NIAGMN_23655 - Uncharacterized protein H0156, at 4,626,109 to 4,626,768
_23655
NIAGMN_23660: NIAGMN_23660 - Ead/Ea22-like protein, at 4,626,789 to 4,627,007
_23660
NIAGMN_23665: NIAGMN_23665 - DUF4752 domain-containing protein, at 4,626,994 to 4,627,278
_23665
NIAGMN_23670: dksA - conjugal transfer protein TraR, at 4,627,275 to 4,627,496
dksA
NIAGMN_23675: NIAGMN_23675 - phage antirepressor Ant, at 4,627,544 to 4,628,173
_23675
NIAGMN_23685: NIAGMN_23685 - Stress-induced protein, KGG, repeat, at 4,629,132 to 4,629,239
_23685
Position (kb) 4627
4628
4629 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4626.728 kb on + strand at 4626.809 kb on - strand at 4626.809 kb on - strand at 4626.839 kb on + strand, within NIAGMN_23660 at 4627.027 kb on + strand, within NIAGMN_23665 at 4627.028 kb on - strand, within NIAGMN_23665 at 4627.118 kb on - strand, within NIAGMN_23665 at 4627.416 kb on - strand, within dksA at 4627.416 kb on - strand, within dksA at 4627.416 kb on - strand, within dksA at 4627.602 kb on - strand at 4627.668 kb on + strand, within NIAGMN_23675 at 4627.669 kb on - strand, within NIAGMN_23675 at 4627.669 kb on - strand, within NIAGMN_23675 at 4627.669 kb on - strand, within NIAGMN_23675 at 4627.889 kb on + strand, within NIAGMN_23675 at 4628.009 kb on - strand, within NIAGMN_23675 at 4628.097 kb on - strand, within NIAGMN_23675 at 4628.215 kb on - strand at 4628.246 kb on - strand at 4628.262 kb on - strand at 4628.262 kb on - strand at 4628.282 kb on - strand at 4628.282 kb on - strand at 4628.282 kb on - strand at 4628.285 kb on - strand at 4628.316 kb on - strand at 4628.316 kb on - strand at 4628.316 kb on - strand at 4628.320 kb on - strand at 4628.338 kb on - strand at 4628.599 kb on + strand at 4628.739 kb on - strand at 4628.781 kb on - strand at 4628.812 kb on - strand at 4628.974 kb on + strand at 4629.110 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,626,728 + +0.1 4,626,809 - +1.0 4,626,809 - +1.2 4,626,839 + NIAGMN_23660 0.23 +1.0 4,627,027 + NIAGMN_23665 0.12 -1.4 4,627,028 - NIAGMN_23665 0.12 -0.9 4,627,118 - NIAGMN_23665 0.44 +0.4 4,627,416 - dksA NIAGMN_23670 0.64 +0.3 4,627,416 - dksA NIAGMN_23670 0.64 +0.0 4,627,416 - dksA NIAGMN_23670 0.64 +2.3 4,627,602 - -0.8 4,627,668 + NIAGMN_23675 0.20 -0.8 4,627,669 - NIAGMN_23675 0.20 -2.6 4,627,669 - NIAGMN_23675 0.20 +0.8 4,627,669 - NIAGMN_23675 0.20 -0.5 4,627,889 + NIAGMN_23675 0.55 -1.4 4,628,009 - NIAGMN_23675 0.74 +1.1 4,628,097 - NIAGMN_23675 0.88 -0.3 4,628,215 - -0.7 4,628,246 - -4.6 4,628,262 - -3.6 4,628,262 - -4.6 4,628,282 - +0.4 4,628,282 - -4.4 4,628,282 - -0.9 4,628,285 - -3.5 4,628,316 - +0.6 4,628,316 - -0.7 4,628,316 - -0.1 4,628,320 - -0.0 4,628,338 - -0.6 4,628,599 + -1.6 4,628,739 - -1.5 4,628,781 - +0.2 4,628,812 - +2.4 4,628,974 + -1.9 4,629,110 + +1.4
Or see this region's nucleotide sequence