Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lomR and NIAGMN_23595 are separated by 232 nucleotides NIAGMN_23595 and NIAGMN_23600 are separated by 56 nucleotides NIAGMN_23600 and NIAGMN_23605 are separated by 93 nucleotides NIAGMN_23605 and NIAGMN_23610 are separated by 353 nucleotides NIAGMN_23610 and NIAGMN_23615 are separated by 9 nucleotides
NIAGMN_23590: lomR - Enterobacterial Ail/Lom protein, at 4,611,501 to 4,612,235
lomR
NIAGMN_23595: NIAGMN_23595 - hok/gef family protein, at 4,612,468 to 4,612,608
_23595
NIAGMN_23600: NIAGMN_23600 - hypothetical protein, at 4,612,665 to 4,613,066
_23600
NIAGMN_23605: NIAGMN_23605 - hypothetical protein, at 4,613,160 to 4,613,465
_23605
NIAGMN_23610: NIAGMN_23610 - hypothetical protein, at 4,613,819 to 4,614,265
_23610
NIAGMN_23615: NIAGMN_23615 - bacteriocin, at 4,614,275 to 4,614,526
_23615
Position (kb) 4613
4614 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4612.167 kb on + strand at 4612.388 kb on - strand at 4612.407 kb on - strand at 4612.430 kb on - strand at 4612.592 kb on + strand, within NIAGMN_23595 at 4612.599 kb on + strand at 4612.599 kb on + strand at 4612.599 kb on + strand at 4612.599 kb on + strand at 4612.599 kb on + strand at 4612.606 kb on + strand at 4612.710 kb on + strand, within NIAGMN_23600 at 4612.710 kb on + strand, within NIAGMN_23600 at 4612.710 kb on + strand, within NIAGMN_23600 at 4612.711 kb on - strand, within NIAGMN_23600 at 4612.711 kb on - strand, within NIAGMN_23600 at 4612.713 kb on - strand, within NIAGMN_23600 at 4612.883 kb on + strand, within NIAGMN_23600 at 4613.105 kb on + strand at 4613.159 kb on + strand at 4613.171 kb on + strand at 4613.171 kb on + strand at 4613.194 kb on + strand, within NIAGMN_23605 at 4613.441 kb on + strand at 4613.525 kb on + strand at 4613.525 kb on + strand at 4613.525 kb on + strand at 4613.525 kb on + strand at 4613.525 kb on + strand at 4613.525 kb on + strand at 4613.529 kb on + strand at 4613.529 kb on + strand at 4613.529 kb on + strand at 4613.529 kb on + strand at 4613.529 kb on + strand at 4613.529 kb on + strand at 4613.529 kb on + strand at 4613.597 kb on + strand at 4613.724 kb on - strand at 4613.814 kb on + strand at 4613.814 kb on + strand at 4613.818 kb on + strand at 4614.112 kb on + strand, within NIAGMN_23610 at 4614.115 kb on + strand, within NIAGMN_23610 at 4614.130 kb on + strand, within NIAGMN_23610
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,612,167 + -2.0 4,612,388 - -0.4 4,612,407 - +1.1 4,612,430 - +0.1 4,612,592 + NIAGMN_23595 0.88 -0.1 4,612,599 + -0.9 4,612,599 + -0.8 4,612,599 + -0.6 4,612,599 + +0.1 4,612,599 + +0.8 4,612,606 + -0.1 4,612,710 + NIAGMN_23600 0.11 -1.2 4,612,710 + NIAGMN_23600 0.11 -2.2 4,612,710 + NIAGMN_23600 0.11 +0.8 4,612,711 - NIAGMN_23600 0.11 -3.1 4,612,711 - NIAGMN_23600 0.11 -0.1 4,612,713 - NIAGMN_23600 0.12 +0.2 4,612,883 + NIAGMN_23600 0.54 -1.3 4,613,105 + -0.7 4,613,159 + -2.6 4,613,171 + +3.3 4,613,171 + -0.5 4,613,194 + NIAGMN_23605 0.11 -0.2 4,613,441 + -1.3 4,613,525 + +0.5 4,613,525 + -0.5 4,613,525 + +1.4 4,613,525 + -2.0 4,613,525 + +0.8 4,613,525 + +0.6 4,613,529 + +1.3 4,613,529 + +2.7 4,613,529 + +1.9 4,613,529 + -1.3 4,613,529 + -0.6 4,613,529 + +0.1 4,613,529 + -0.5 4,613,597 + -0.2 4,613,724 - -0.1 4,613,814 + -2.4 4,613,814 + -0.1 4,613,818 + -0.2 4,614,112 + NIAGMN_23610 0.66 +1.0 4,614,115 + NIAGMN_23610 0.66 -0.2 4,614,130 + NIAGMN_23610 0.70 -3.5
Or see this region's nucleotide sequence