Strain Fitness in Escherichia coli ECRC102 around NIAGMN_23035

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttccP and NIAGMN_23030 are separated by 638 nucleotidesNIAGMN_23030 and Ser_trna are separated by 104 nucleotidesSer_trna and hyaA are separated by 425 nucleotides NIAGMN_23025: tccP - Tir-cytoskeleton coupling protein TccP2, at 4,530,415 to 4,531,125 tccP NIAGMN_23030: NIAGMN_23030 - hypothetical protein, at 4,531,764 to 4,531,946 _23030 NIAGMN_23035: Ser_trna - tRNA-Ser(tga), at 4,532,051 to 4,532,138 _trna NIAGMN_23040: hyaA - hydrogenase 1 small subunit, at 4,532,564 to 4,533,682 hyaA Position (kb) 4532 4533Strain fitness (log2 ratio) -2 -1 0 1at 4531.402 kb on + strandat 4531.610 kb on - strandat 4531.664 kb on - strandat 4531.838 kb on - strand, within NIAGMN_23030at 4532.331 kb on - strandat 4532.412 kb on + strandat 4532.413 kb on - strandat 4532.413 kb on - strandat 4532.728 kb on - strand, within hyaAat 4532.898 kb on - strand, within hyaAat 4532.909 kb on + strand, within hyaAat 4532.911 kb on + strand, within hyaAat 4532.962 kb on + strand, within hyaAat 4532.984 kb on - strand, within hyaA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,531,402 + +0.0
4,531,610 - -2.0
4,531,664 - -1.1
4,531,838 - NIAGMN_23030 0.40 -0.1
4,532,331 - -1.3
4,532,412 + +0.6
4,532,413 - +1.0
4,532,413 - -1.5
4,532,728 - hyaA NIAGMN_23040 0.15 +0.5
4,532,898 - hyaA NIAGMN_23040 0.30 +0.6
4,532,909 + hyaA NIAGMN_23040 0.31 +0.3
4,532,911 + hyaA NIAGMN_23040 0.31 -0.6
4,532,962 + hyaA NIAGMN_23040 0.36 -0.4
4,532,984 - hyaA NIAGMN_23040 0.38 +0.6

Or see this region's nucleotide sequence