Strain Fitness in Escherichia coli ECRC102 around NIAGMN_23025

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_23015 and NIAGMN_23020 are separated by 1 nucleotidesNIAGMN_23020 and tccP are separated by 124 nucleotidestccP and NIAGMN_23030 are separated by 638 nucleotidesNIAGMN_23030 and Ser_trna are separated by 104 nucleotides NIAGMN_23015: NIAGMN_23015 - phage tail protein, at 4,528,706 to 4,530,019 _23015 NIAGMN_23020: NIAGMN_23020 - phage tail protein, at 4,530,021 to 4,530,290 _23020 NIAGMN_23025: tccP - Tir-cytoskeleton coupling protein TccP2, at 4,530,415 to 4,531,125 tccP NIAGMN_23030: NIAGMN_23030 - hypothetical protein, at 4,531,764 to 4,531,946 _23030 NIAGMN_23035: Ser_trna - tRNA-Ser(tga), at 4,532,051 to 4,532,138 _trna Position (kb) 4530 4531 4532Strain fitness (log2 ratio) -2 -1 0 1at 4531.402 kb on + strandat 4531.610 kb on - strandat 4531.664 kb on - strandat 4531.838 kb on - strand, within NIAGMN_23030

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,531,402 + +0.0
4,531,610 - -2.0
4,531,664 - -1.1
4,531,838 - NIAGMN_23030 0.40 -0.1

Or see this region's nucleotide sequence