Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_22800 and NIAGMN_22805 are separated by 126 nucleotides NIAGMN_22805 and NIAGMN_22810 are separated by 109 nucleotides NIAGMN_22810 and NIAGMN_22820 are separated by 186 nucleotides NIAGMN_22820 and NIAGMN_22825 are separated by 447 nucleotides
NIAGMN_22800: NIAGMN_22800 - Prophage protein, at 4,497,985 to 4,498,296
_22800
NIAGMN_22805: NIAGMN_22805 - DUF551 domain-containing protein, at 4,498,423 to 4,498,986
_22805
NIAGMN_22810: NIAGMN_22810 - hypothetical protein, at 4,499,096 to 4,499,200
_22810
NIAGMN_22820: NIAGMN_22820 - protein hokC, at 4,499,387 to 4,499,599
_22820
NIAGMN_22825: NIAGMN_22825 - DUF968 domain-containing protein, at 4,500,047 to 4,501,096
_22825
Position (kb)
4499
4500 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 4498.939 kb on + strand at 4499.015 kb on + strand at 4499.015 kb on + strand at 4499.015 kb on + strand at 4499.017 kb on + strand at 4499.017 kb on + strand at 4499.017 kb on + strand at 4499.017 kb on + strand at 4499.018 kb on - strand at 4499.018 kb on - strand at 4499.021 kb on + strand at 4499.021 kb on + strand at 4499.095 kb on + strand at 4499.095 kb on + strand at 4499.095 kb on + strand at 4499.095 kb on + strand at 4499.095 kb on + strand at 4499.264 kb on - strand at 4499.402 kb on - strand at 4499.402 kb on - strand at 4499.860 kb on + strand at 4500.175 kb on + strand, within NIAGMN_22825
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,498,939 + +1.0 4,499,015 + +1.8 4,499,015 + +0.0 4,499,015 + +1.4 4,499,017 + +1.4 4,499,017 + +0.8 4,499,017 + +0.6 4,499,017 + +1.4 4,499,018 - -0.1 4,499,018 - +0.8 4,499,021 + +1.0 4,499,021 + -0.5 4,499,095 + +1.2 4,499,095 + +0.4 4,499,095 + +1.3 4,499,095 + +0.3 4,499,095 + -0.7 4,499,264 - +0.1 4,499,402 - +3.8 4,499,402 - -0.8 4,499,860 + +1.9 4,500,175 + NIAGMN_22825 0.12 +1.3
Or see this region's nucleotide sequence