Strain Fitness in Escherichia coli ECRC102 around NIAGMN_22805

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntNIAGMN_22785 and NIAGMN_22790 overlap by 4 nucleotidesNIAGMN_22790 and NIAGMN_22795 are separated by 32 nucleotidesNIAGMN_22795 and NIAGMN_22800 overlap by 4 nucleotidesNIAGMN_22800 and NIAGMN_22805 are separated by 126 nucleotidesNIAGMN_22805 and NIAGMN_22810 are separated by 109 nucleotidesNIAGMN_22810 and NIAGMN_22820 are separated by 186 nucleotides NIAGMN_22785: NIAGMN_22785 - hypothetical protein, at 4,497,226 to 4,497,450 _22785 NIAGMN_22790: NIAGMN_22790 - Eae-like protein, at 4,497,447 to 4,497,803 _22790 NIAGMN_22795: NIAGMN_22795 - hypothetical protein, at 4,497,836 to 4,497,988 _22795 NIAGMN_22800: NIAGMN_22800 - Prophage protein, at 4,497,985 to 4,498,296 _22800 NIAGMN_22805: NIAGMN_22805 - DUF551 domain-containing protein, at 4,498,423 to 4,498,986 _22805 NIAGMN_22810: NIAGMN_22810 - hypothetical protein, at 4,499,096 to 4,499,200 _22810 NIAGMN_22820: NIAGMN_22820 - protein hokC, at 4,499,387 to 4,499,599 _22820 Position (kb) 4498 4499Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4497.632 kb on + strand, within NIAGMN_22790at 4497.636 kb on + strand, within NIAGMN_22790at 4497.648 kb on + strand, within NIAGMN_22790at 4497.757 kb on + strand, within NIAGMN_22790at 4497.757 kb on + strand, within NIAGMN_22790at 4497.757 kb on + strand, within NIAGMN_22790at 4497.757 kb on + strand, within NIAGMN_22790at 4497.873 kb on + strand, within NIAGMN_22795at 4497.899 kb on + strand, within NIAGMN_22795at 4497.899 kb on + strand, within NIAGMN_22795at 4497.992 kb on + strandat 4498.939 kb on + strandat 4499.015 kb on + strandat 4499.015 kb on + strandat 4499.015 kb on + strandat 4499.017 kb on + strandat 4499.017 kb on + strandat 4499.017 kb on + strandat 4499.017 kb on + strandat 4499.018 kb on - strandat 4499.018 kb on - strandat 4499.021 kb on + strandat 4499.021 kb on + strandat 4499.095 kb on + strandat 4499.095 kb on + strandat 4499.095 kb on + strandat 4499.095 kb on + strandat 4499.095 kb on + strandat 4499.264 kb on - strandat 4499.402 kb on - strandat 4499.402 kb on - strandat 4499.860 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
4,497,632 + NIAGMN_22790 0.52 +0.4
4,497,636 + NIAGMN_22790 0.53 -1.1
4,497,648 + NIAGMN_22790 0.56 +1.3
4,497,757 + NIAGMN_22790 0.87 +0.3
4,497,757 + NIAGMN_22790 0.87 -3.9
4,497,757 + NIAGMN_22790 0.87 +0.9
4,497,757 + NIAGMN_22790 0.87 +2.2
4,497,873 + NIAGMN_22795 0.24 +1.3
4,497,899 + NIAGMN_22795 0.41 +0.1
4,497,899 + NIAGMN_22795 0.41 -0.4
4,497,992 + -3.8
4,498,939 + +1.0
4,499,015 + +1.8
4,499,015 + +0.0
4,499,015 + +1.4
4,499,017 + +1.4
4,499,017 + +0.8
4,499,017 + +0.6
4,499,017 + +1.4
4,499,018 - -0.1
4,499,018 - +0.8
4,499,021 + +1.0
4,499,021 + -0.5
4,499,095 + +1.2
4,499,095 + +0.4
4,499,095 + +1.3
4,499,095 + +0.3
4,499,095 + -0.7
4,499,264 - +0.1
4,499,402 - +3.8
4,499,402 - -0.8
4,499,860 + +1.9

Or see this region's nucleotide sequence