Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_22780 and NIAGMN_22785 are separated by 21 nucleotides NIAGMN_22785 and NIAGMN_22790 overlap by 4 nucleotides NIAGMN_22790 and NIAGMN_22795 are separated by 32 nucleotides NIAGMN_22795 and NIAGMN_22800 overlap by 4 nucleotides NIAGMN_22800 and NIAGMN_22805 are separated by 126 nucleotides NIAGMN_22805 and NIAGMN_22810 are separated by 109 nucleotides
NIAGMN_22780: NIAGMN_22780 - DUF1627 domain-containing protein, at 4,496,506 to 4,497,204
_22780
NIAGMN_22785: NIAGMN_22785 - hypothetical protein, at 4,497,226 to 4,497,450
_22785
NIAGMN_22790: NIAGMN_22790 - Eae-like protein, at 4,497,447 to 4,497,803
_22790
NIAGMN_22795: NIAGMN_22795 - hypothetical protein, at 4,497,836 to 4,497,988
_22795
NIAGMN_22800: NIAGMN_22800 - Prophage protein, at 4,497,985 to 4,498,296
_22800
NIAGMN_22805: NIAGMN_22805 - DUF551 domain-containing protein, at 4,498,423 to 4,498,986
_22805
NIAGMN_22810: NIAGMN_22810 - hypothetical protein, at 4,499,096 to 4,499,200
_22810
Position (kb)
4497
4498
4499 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4497.225 kb on + strand at 4497.238 kb on + strand at 4497.264 kb on + strand, within NIAGMN_22785 at 4497.264 kb on + strand, within NIAGMN_22785 at 4497.264 kb on + strand, within NIAGMN_22785 at 4497.270 kb on + strand, within NIAGMN_22785 at 4497.303 kb on + strand, within NIAGMN_22785 at 4497.318 kb on + strand, within NIAGMN_22785 at 4497.418 kb on + strand, within NIAGMN_22785 at 4497.420 kb on + strand, within NIAGMN_22785 at 4497.420 kb on + strand, within NIAGMN_22785 at 4497.632 kb on + strand, within NIAGMN_22790 at 4497.636 kb on + strand, within NIAGMN_22790 at 4497.648 kb on + strand, within NIAGMN_22790 at 4497.757 kb on + strand, within NIAGMN_22790 at 4497.757 kb on + strand, within NIAGMN_22790 at 4497.757 kb on + strand, within NIAGMN_22790 at 4497.757 kb on + strand, within NIAGMN_22790 at 4497.873 kb on + strand, within NIAGMN_22795 at 4497.899 kb on + strand, within NIAGMN_22795 at 4497.899 kb on + strand, within NIAGMN_22795 at 4497.992 kb on + strand at 4498.939 kb on + strand at 4499.015 kb on + strand at 4499.015 kb on + strand at 4499.015 kb on + strand at 4499.017 kb on + strand at 4499.017 kb on + strand at 4499.017 kb on + strand at 4499.017 kb on + strand at 4499.018 kb on - strand at 4499.018 kb on - strand at 4499.021 kb on + strand at 4499.021 kb on + strand at 4499.095 kb on + strand at 4499.095 kb on + strand at 4499.095 kb on + strand at 4499.095 kb on + strand at 4499.095 kb on + strand at 4499.264 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,497,225 + -0.9 4,497,238 + -0.4 4,497,264 + NIAGMN_22785 0.17 +0.8 4,497,264 + NIAGMN_22785 0.17 +0.6 4,497,264 + NIAGMN_22785 0.17 +0.9 4,497,270 + NIAGMN_22785 0.20 -0.2 4,497,303 + NIAGMN_22785 0.34 +0.7 4,497,318 + NIAGMN_22785 0.41 +0.6 4,497,418 + NIAGMN_22785 0.85 +0.5 4,497,420 + NIAGMN_22785 0.86 +0.6 4,497,420 + NIAGMN_22785 0.86 +0.8 4,497,632 + NIAGMN_22790 0.52 +0.4 4,497,636 + NIAGMN_22790 0.53 -1.1 4,497,648 + NIAGMN_22790 0.56 +1.3 4,497,757 + NIAGMN_22790 0.87 +0.3 4,497,757 + NIAGMN_22790 0.87 -3.9 4,497,757 + NIAGMN_22790 0.87 +0.9 4,497,757 + NIAGMN_22790 0.87 +2.2 4,497,873 + NIAGMN_22795 0.24 +1.3 4,497,899 + NIAGMN_22795 0.41 +0.1 4,497,899 + NIAGMN_22795 0.41 -0.4 4,497,992 + -3.8 4,498,939 + +1.0 4,499,015 + +1.8 4,499,015 + +0.0 4,499,015 + +1.4 4,499,017 + +1.4 4,499,017 + +0.8 4,499,017 + +0.6 4,499,017 + +1.4 4,499,018 - -0.1 4,499,018 - +0.8 4,499,021 + +1.0 4,499,021 + -0.5 4,499,095 + +1.2 4,499,095 + +0.4 4,499,095 + +1.3 4,499,095 + +0.3 4,499,095 + -0.7 4,499,264 - +0.1
Or see this region's nucleotide sequence