Strain Fitness in Escherichia coli ECRC102 around NIAGMN_22785

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_22775 and NIAGMN_22780 are separated by 34 nucleotidesNIAGMN_22780 and NIAGMN_22785 are separated by 21 nucleotidesNIAGMN_22785 and NIAGMN_22790 overlap by 4 nucleotidesNIAGMN_22790 and NIAGMN_22795 are separated by 32 nucleotidesNIAGMN_22795 and NIAGMN_22800 overlap by 4 nucleotidesNIAGMN_22800 and NIAGMN_22805 are separated by 126 nucleotides NIAGMN_22775: NIAGMN_22775 - replication protein, at 4,496,049 to 4,496,471 _22775 NIAGMN_22780: NIAGMN_22780 - DUF1627 domain-containing protein, at 4,496,506 to 4,497,204 _22780 NIAGMN_22785: NIAGMN_22785 - hypothetical protein, at 4,497,226 to 4,497,450 _22785 NIAGMN_22790: NIAGMN_22790 - Eae-like protein, at 4,497,447 to 4,497,803 _22790 NIAGMN_22795: NIAGMN_22795 - hypothetical protein, at 4,497,836 to 4,497,988 _22795 NIAGMN_22800: NIAGMN_22800 - Prophage protein, at 4,497,985 to 4,498,296 _22800 NIAGMN_22805: NIAGMN_22805 - DUF551 domain-containing protein, at 4,498,423 to 4,498,986 _22805 Position (kb) 4497 4498Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4496.481 kb on + strandat 4496.772 kb on + strand, within NIAGMN_22780at 4496.847 kb on + strand, within NIAGMN_22780at 4497.225 kb on + strandat 4497.238 kb on + strandat 4497.264 kb on + strand, within NIAGMN_22785at 4497.264 kb on + strand, within NIAGMN_22785at 4497.264 kb on + strand, within NIAGMN_22785at 4497.270 kb on + strand, within NIAGMN_22785at 4497.303 kb on + strand, within NIAGMN_22785at 4497.318 kb on + strand, within NIAGMN_22785at 4497.418 kb on + strand, within NIAGMN_22785at 4497.420 kb on + strand, within NIAGMN_22785at 4497.420 kb on + strand, within NIAGMN_22785at 4497.632 kb on + strand, within NIAGMN_22790at 4497.636 kb on + strand, within NIAGMN_22790at 4497.648 kb on + strand, within NIAGMN_22790at 4497.757 kb on + strand, within NIAGMN_22790at 4497.757 kb on + strand, within NIAGMN_22790at 4497.757 kb on + strand, within NIAGMN_22790at 4497.757 kb on + strand, within NIAGMN_22790at 4497.873 kb on + strand, within NIAGMN_22795at 4497.899 kb on + strand, within NIAGMN_22795at 4497.899 kb on + strand, within NIAGMN_22795at 4497.992 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,496,481 + -1.2
4,496,772 + NIAGMN_22780 0.38 +1.3
4,496,847 + NIAGMN_22780 0.49 +2.5
4,497,225 + -0.9
4,497,238 + -0.4
4,497,264 + NIAGMN_22785 0.17 +0.8
4,497,264 + NIAGMN_22785 0.17 +0.6
4,497,264 + NIAGMN_22785 0.17 +0.9
4,497,270 + NIAGMN_22785 0.20 -0.2
4,497,303 + NIAGMN_22785 0.34 +0.7
4,497,318 + NIAGMN_22785 0.41 +0.6
4,497,418 + NIAGMN_22785 0.85 +0.5
4,497,420 + NIAGMN_22785 0.86 +0.6
4,497,420 + NIAGMN_22785 0.86 +0.8
4,497,632 + NIAGMN_22790 0.52 +0.4
4,497,636 + NIAGMN_22790 0.53 -1.1
4,497,648 + NIAGMN_22790 0.56 +1.3
4,497,757 + NIAGMN_22790 0.87 +0.3
4,497,757 + NIAGMN_22790 0.87 -3.9
4,497,757 + NIAGMN_22790 0.87 +0.9
4,497,757 + NIAGMN_22790 0.87 +2.2
4,497,873 + NIAGMN_22795 0.24 +1.3
4,497,899 + NIAGMN_22795 0.41 +0.1
4,497,899 + NIAGMN_22795 0.41 -0.4
4,497,992 + -3.8

Or see this region's nucleotide sequence