Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnp-IS3 and tnp-IS3 overlap by 1 nucleotides tnp-IS3 and NIAGMN_22605 are separated by 255 nucleotides NIAGMN_22605 and fepA overlap by 13 nucleotides
NIAGMN_22595: tnp-IS3 - IS3 family transposase, at 4,457,284 to 4,458,171
tnp-IS3
NIAGMN_22600: tnp-IS3 - IS3 family transposase, at 4,458,171 to 4,458,497
tnp-IS3
NIAGMN_22605: NIAGMN_22605 - hypothetical protein, at 4,458,753 to 4,458,881
_22605
NIAGMN_22610: fepA - TonB-dependent receptor, at 4,458,869 to 4,461,016
fepA
Position (kb) 4458
4459
4460
4461
4462 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4458.586 kb on - strand at 4458.678 kb on - strand at 4458.696 kb on + strand at 4458.696 kb on + strand at 4458.800 kb on + strand, within NIAGMN_22605 at 4458.892 kb on + strand at 4458.935 kb on - strand at 4459.007 kb on - strand at 4459.110 kb on - strand, within fepA at 4459.345 kb on + strand, within fepA at 4459.682 kb on - strand, within fepA at 4459.995 kb on + strand, within fepA at 4459.996 kb on - strand, within fepA at 4460.164 kb on - strand, within fepA at 4460.164 kb on - strand, within fepA at 4460.245 kb on - strand, within fepA at 4460.306 kb on - strand, within fepA at 4460.308 kb on - strand, within fepA at 4460.341 kb on - strand, within fepA at 4460.398 kb on + strand, within fepA at 4460.399 kb on - strand, within fepA at 4460.566 kb on - strand, within fepA at 4460.640 kb on + strand, within fepA at 4460.640 kb on + strand, within fepA at 4460.641 kb on - strand, within fepA at 4460.641 kb on - strand, within fepA at 4460.644 kb on + strand, within fepA at 4460.666 kb on + strand, within fepA at 4460.667 kb on - strand, within fepA at 4460.756 kb on + strand, within fepA at 4460.842 kb on + strand at 4461.008 kb on - strand at 4461.087 kb on - strand at 4461.092 kb on + strand at 4461.244 kb on + strand at 4461.297 kb on + strand at 4461.318 kb on + strand at 4461.360 kb on + strand at 4461.410 kb on + strand at 4461.414 kb on - strand at 4461.453 kb on + strand at 4461.453 kb on + strand at 4461.576 kb on + strand at 4461.664 kb on + strand at 4461.688 kb on + strand at 4461.728 kb on + strand at 4461.728 kb on + strand at 4461.751 kb on + strand at 4461.776 kb on - strand at 4461.807 kb on - strand at 4462.014 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,458,586 - -2.3 4,458,678 - -0.1 4,458,696 + -0.5 4,458,696 + +0.0 4,458,800 + NIAGMN_22605 0.36 -0.0 4,458,892 + -1.6 4,458,935 - +1.4 4,459,007 - -0.4 4,459,110 - fepA NIAGMN_22610 0.11 +1.8 4,459,345 + fepA NIAGMN_22610 0.22 -0.9 4,459,682 - fepA NIAGMN_22610 0.38 +1.1 4,459,995 + fepA NIAGMN_22610 0.52 +0.2 4,459,996 - fepA NIAGMN_22610 0.52 -0.8 4,460,164 - fepA NIAGMN_22610 0.60 -0.1 4,460,164 - fepA NIAGMN_22610 0.60 -2.1 4,460,245 - fepA NIAGMN_22610 0.64 -2.6 4,460,306 - fepA NIAGMN_22610 0.67 +0.9 4,460,308 - fepA NIAGMN_22610 0.67 -1.7 4,460,341 - fepA NIAGMN_22610 0.69 -1.5 4,460,398 + fepA NIAGMN_22610 0.71 +0.4 4,460,399 - fepA NIAGMN_22610 0.71 -2.1 4,460,566 - fepA NIAGMN_22610 0.79 +1.3 4,460,640 + fepA NIAGMN_22610 0.82 +0.4 4,460,640 + fepA NIAGMN_22610 0.82 +0.3 4,460,641 - fepA NIAGMN_22610 0.82 -0.4 4,460,641 - fepA NIAGMN_22610 0.82 -1.4 4,460,644 + fepA NIAGMN_22610 0.83 -0.8 4,460,666 + fepA NIAGMN_22610 0.84 -0.7 4,460,667 - fepA NIAGMN_22610 0.84 -0.0 4,460,756 + fepA NIAGMN_22610 0.88 -0.4 4,460,842 + +0.4 4,461,008 - +0.4 4,461,087 - +0.5 4,461,092 + +1.0 4,461,244 + +0.7 4,461,297 + +1.4 4,461,318 + -1.7 4,461,360 + -2.2 4,461,410 + +0.2 4,461,414 - -0.5 4,461,453 + +1.1 4,461,453 + +0.8 4,461,576 + -0.2 4,461,664 + -1.9 4,461,688 + +0.6 4,461,728 + +0.6 4,461,728 + -0.4 4,461,751 + -0.2 4,461,776 - +1.4 4,461,807 - -0.4 4,462,014 - +0.0
Or see this region's nucleotide sequence