Strain Fitness in Escherichia coli ECRC102 around NIAGMN_22590

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrssA and NIAGMN_22585 overlap by 4 nucleotidesNIAGMN_22585 and NIAGMN_22590 overlap by 4 nucleotidesNIAGMN_22590 and tnp-IS3 overlap by 35 nucleotidestnp-IS3 and tnp-IS3 overlap by 1 nucleotides NIAGMN_22580: rssA - phospholipase, at 4,454,450 to 4,455,520 rssA NIAGMN_22585: NIAGMN_22585 - chemotaxis protein, at 4,455,517 to 4,456,422 _22585 NIAGMN_22590: NIAGMN_22590 - Vimentin yjdA, at 4,456,419 to 4,457,318 _22590 NIAGMN_22595: tnp-IS3 - IS3 family transposase, at 4,457,284 to 4,458,171 tnp-IS3 NIAGMN_22600: tnp-IS3 - IS3 family transposase, at 4,458,171 to 4,458,497 tnp-IS3 Position (kb) 4456 4457 4458Strain fitness (log2 ratio) -1 0 1at 4455.425 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
4,455,425 - +1.2

Or see this region's nucleotide sequence