Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeeS and NIAGMN_22560 are separated by 14 nucleotides NIAGMN_22560 and NIAGMN_22565 are separated by 81 nucleotides NIAGMN_22565 and NIAGMN_22570 are separated by 220 nucleotides NIAGMN_22570 and NIAGMN_22575 are separated by 15 nucleotides
NIAGMN_22555: yeeS - UPF0758 protein YeeS, at 4,451,111 to 4,451,587
yeeS
NIAGMN_22560: NIAGMN_22560 - restriction endonuclease, at 4,451,602 to 4,452,081
_22560
NIAGMN_22565: NIAGMN_22565 - DUF932 domain-containing protein, at 4,452,163 to 4,452,984
_22565
NIAGMN_22570: NIAGMN_22570 - hypothetical protein, at 4,453,205 to 4,453,615
_22570
NIAGMN_22575: NIAGMN_22575 - hypothetical protein, at 4,453,631 to 4,454,314
_22575
Position (kb) 4452
4453 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4451.620 kb on - strand at 4451.620 kb on - strand at 4451.718 kb on - strand, within NIAGMN_22560 at 4451.718 kb on - strand, within NIAGMN_22560 at 4452.845 kb on + strand, within NIAGMN_22565 at 4452.846 kb on - strand, within NIAGMN_22565 at 4453.024 kb on + strand at 4453.025 kb on - strand at 4453.087 kb on - strand at 4453.157 kb on - strand at 4453.176 kb on - strand at 4453.213 kb on + strand at 4453.393 kb on - strand, within NIAGMN_22570 at 4453.393 kb on - strand, within NIAGMN_22570 at 4453.436 kb on - strand, within NIAGMN_22570 at 4453.436 kb on - strand, within NIAGMN_22570 at 4453.442 kb on - strand, within NIAGMN_22570 at 4453.637 kb on - strand at 4453.767 kb on + strand, within NIAGMN_22575 at 4453.767 kb on + strand, within NIAGMN_22575 at 4453.879 kb on + strand, within NIAGMN_22575
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,451,620 - +1.4 4,451,620 - +0.5 4,451,718 - NIAGMN_22560 0.24 +1.5 4,451,718 - NIAGMN_22560 0.24 -0.0 4,452,845 + NIAGMN_22565 0.83 -4.1 4,452,846 - NIAGMN_22565 0.83 +1.1 4,453,024 + -2.1 4,453,025 - +2.1 4,453,087 - -0.8 4,453,157 - +0.3 4,453,176 - +0.3 4,453,213 + +1.2 4,453,393 - NIAGMN_22570 0.46 -0.3 4,453,393 - NIAGMN_22570 0.46 +0.6 4,453,436 - NIAGMN_22570 0.56 -0.9 4,453,436 - NIAGMN_22570 0.56 -1.9 4,453,442 - NIAGMN_22570 0.58 -1.3 4,453,637 - +0.3 4,453,767 + NIAGMN_22575 0.20 +0.3 4,453,767 + NIAGMN_22575 0.20 -0.4 4,453,879 + NIAGMN_22575 0.36 +0.0
Or see this region's nucleotide sequence