Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeeW and NIAGMN_22540 are separated by 106 nucleotides NIAGMN_22540 and cbtA are separated by 88 nucleotides cbtA and yeeT are separated by 73 nucleotides yeeT and yeeS are separated by 62 nucleotides yeeS and NIAGMN_22560 are separated by 14 nucleotides
NIAGMN_22535: yeeW - Protein YeeW, at 4,449,732 to 4,449,926
yeeW
NIAGMN_22540: NIAGMN_22540 - toxin of the YeeV-YeeU toxin-antitoxin system, at 4,450,033 to 4,450,296
_22540
NIAGMN_22545: cbtA - type IV toxin-antitoxin system toxin CbtA, at 4,450,385 to 4,450,753
cbtA
NIAGMN_22550: yeeT - Uncharacterized protein YeeT, at 4,450,827 to 4,451,048
yeeT
NIAGMN_22555: yeeS - UPF0758 protein YeeS, at 4,451,111 to 4,451,587
yeeS
NIAGMN_22560: NIAGMN_22560 - restriction endonuclease, at 4,451,602 to 4,452,081
_22560
Position (kb) 4450
4451
4452 Strain fitness (log2 ratio) -1
0
1
2 at 4449.831 kb on - strand, within yeeW at 4449.846 kb on - strand, within yeeW at 4449.895 kb on - strand, within yeeW at 4449.895 kb on - strand, within yeeW at 4449.895 kb on - strand, within yeeW at 4449.944 kb on - strand at 4450.225 kb on + strand, within NIAGMN_22540 at 4450.225 kb on + strand, within NIAGMN_22540 at 4450.279 kb on + strand at 4450.279 kb on + strand at 4450.285 kb on + strand at 4450.314 kb on + strand at 4450.428 kb on + strand, within cbtA at 4450.936 kb on + strand, within yeeT at 4450.964 kb on - strand, within yeeT at 4450.964 kb on - strand, within yeeT at 4451.015 kb on + strand, within yeeT at 4451.620 kb on - strand at 4451.620 kb on - strand at 4451.718 kb on - strand, within NIAGMN_22560 at 4451.718 kb on - strand, within NIAGMN_22560
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,449,831 - yeeW NIAGMN_22535 0.51 +0.3 4,449,846 - yeeW NIAGMN_22535 0.58 -0.4 4,449,895 - yeeW NIAGMN_22535 0.84 -0.5 4,449,895 - yeeW NIAGMN_22535 0.84 +0.3 4,449,895 - yeeW NIAGMN_22535 0.84 +1.8 4,449,944 - -1.2 4,450,225 + NIAGMN_22540 0.73 +1.0 4,450,225 + NIAGMN_22540 0.73 -0.9 4,450,279 + +1.4 4,450,279 + -0.8 4,450,285 + +2.4 4,450,314 + -0.3 4,450,428 + cbtA NIAGMN_22545 0.12 +1.8 4,450,936 + yeeT NIAGMN_22550 0.49 +0.9 4,450,964 - yeeT NIAGMN_22550 0.62 +0.4 4,450,964 - yeeT NIAGMN_22550 0.62 +1.1 4,451,015 + yeeT NIAGMN_22550 0.85 -1.3 4,451,620 - +1.4 4,451,620 - +0.5 4,451,718 - NIAGMN_22560 0.24 +1.5 4,451,718 - NIAGMN_22560 0.24 -0.0
Or see this region's nucleotide sequence