Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt wzc and wcaA are separated by 92 nucleotides wcaA and wcaB are separated by 2 nucleotides wcaB and wcaC overlap by 4 nucleotides
NIAGMN_22255: wzc - tyrosine-protein kinase Wzc, at 4,389,345 to 4,391,507
wzc
NIAGMN_22260: wcaA - colanic acid biosynthesis glycosyltransferase WcaA, at 4,391,600 to 4,392,439
wcaA
NIAGMN_22265: wcaB - colanic acid biosynthesis acetyltransferase WcaB, at 4,392,442 to 4,392,930
wcaB
NIAGMN_22270: wcaC - colanic acid biosynthesis glycosyltransferase WcaC, at 4,392,927 to 4,394,144
wcaC
Position (kb)
4392
4393 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4391.472 kb on + strand at 4391.489 kb on + strand at 4391.489 kb on + strand at 4391.593 kb on - strand at 4391.600 kb on - strand at 4391.627 kb on + strand at 4391.628 kb on - strand at 4391.628 kb on - strand at 4391.628 kb on - strand at 4391.628 kb on - strand at 4391.628 kb on - strand at 4391.693 kb on + strand, within wcaA at 4391.694 kb on - strand, within wcaA at 4391.694 kb on - strand, within wcaA at 4391.782 kb on + strand, within wcaA at 4391.782 kb on + strand, within wcaA at 4391.790 kb on - strand, within wcaA at 4391.807 kb on - strand, within wcaA at 4391.861 kb on + strand, within wcaA at 4391.991 kb on - strand, within wcaA at 4392.009 kb on + strand, within wcaA at 4392.442 kb on - strand at 4392.442 kb on - strand at 4392.442 kb on - strand at 4392.455 kb on + strand at 4392.652 kb on - strand, within wcaB at 4392.654 kb on + strand, within wcaB at 4392.807 kb on + strand, within wcaB at 4392.831 kb on + strand, within wcaB at 4392.925 kb on - strand at 4393.415 kb on + strand, within wcaC at 4393.415 kb on + strand, within wcaC at 4393.415 kb on + strand, within wcaC at 4393.509 kb on - strand, within wcaC at 4393.574 kb on + strand, within wcaC at 4393.684 kb on - strand, within wcaC at 4393.752 kb on - strand, within wcaC at 4393.877 kb on + strand, within wcaC
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,391,472 + -0.4 4,391,489 + +1.2 4,391,489 + -1.8 4,391,593 - +0.6 4,391,600 - -0.8 4,391,627 + -0.4 4,391,628 - +1.2 4,391,628 - -1.5 4,391,628 - +0.7 4,391,628 - +1.9 4,391,628 - +1.7 4,391,693 + wcaA NIAGMN_22260 0.11 +0.8 4,391,694 - wcaA NIAGMN_22260 0.11 +0.2 4,391,694 - wcaA NIAGMN_22260 0.11 +0.8 4,391,782 + wcaA NIAGMN_22260 0.22 -0.6 4,391,782 + wcaA NIAGMN_22260 0.22 +0.9 4,391,790 - wcaA NIAGMN_22260 0.23 +1.1 4,391,807 - wcaA NIAGMN_22260 0.25 -1.1 4,391,861 + wcaA NIAGMN_22260 0.31 +0.6 4,391,991 - wcaA NIAGMN_22260 0.47 +0.6 4,392,009 + wcaA NIAGMN_22260 0.49 +0.2 4,392,442 - -1.4 4,392,442 - +0.3 4,392,442 - -1.1 4,392,455 + +0.3 4,392,652 - wcaB NIAGMN_22265 0.43 -1.3 4,392,654 + wcaB NIAGMN_22265 0.43 +0.4 4,392,807 + wcaB NIAGMN_22265 0.75 -0.2 4,392,831 + wcaB NIAGMN_22265 0.80 +1.1 4,392,925 - -0.0 4,393,415 + wcaC NIAGMN_22270 0.40 +0.6 4,393,415 + wcaC NIAGMN_22270 0.40 +0.4 4,393,415 + wcaC NIAGMN_22270 0.40 -1.8 4,393,509 - wcaC NIAGMN_22270 0.48 -0.8 4,393,574 + wcaC NIAGMN_22270 0.53 +0.5 4,393,684 - wcaC NIAGMN_22270 0.62 -0.1 4,393,752 - wcaC NIAGMN_22270 0.68 +0.2 4,393,877 + wcaC NIAGMN_22270 0.78 +0.3
Or see this region's nucleotide sequence