Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt alkA and mASE1 are separated by 100 nucleotides mASE1 and NIAGMN_22210 overlap by 23 nucleotides NIAGMN_22210 and udk are separated by 317 nucleotides
NIAGMN_22200: alkA - DNA-3-methyladenine glycosylase 2, at 4,376,992 to 4,377,840
alkA
NIAGMN_22205: mASE1 - diguanylate cyclase, at 4,377,941 to 4,380,748
mASE1
NIAGMN_22210: NIAGMN_22210 - Putative diguanylate cyclase YegE, at 4,380,726 to 4,381,259
_22210
NIAGMN_22215: udk - uridine kinase, at 4,381,577 to 4,382,218
udk
Position (kb) 4377
4378
4379
4380
4381 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4376.961 kb on + strand at 4376.980 kb on + strand at 4376.995 kb on + strand at 4376.995 kb on + strand at 4376.995 kb on + strand at 4376.995 kb on + strand at 4376.997 kb on + strand at 4377.141 kb on + strand, within alkA at 4377.179 kb on + strand, within alkA at 4377.407 kb on + strand, within alkA at 4377.445 kb on + strand, within alkA at 4377.445 kb on + strand, within alkA at 4377.445 kb on + strand, within alkA at 4377.445 kb on + strand, within alkA at 4377.497 kb on + strand, within alkA at 4377.506 kb on + strand, within alkA at 4377.510 kb on + strand, within alkA at 4377.510 kb on + strand, within alkA at 4377.573 kb on - strand, within alkA at 4377.757 kb on + strand at 4377.801 kb on + strand at 4377.808 kb on + strand at 4377.810 kb on + strand at 4377.810 kb on + strand at 4377.810 kb on + strand at 4377.947 kb on - strand at 4377.958 kb on - strand at 4377.965 kb on - strand at 4378.144 kb on + strand at 4378.145 kb on - strand at 4378.145 kb on - strand at 4378.186 kb on - strand at 4378.195 kb on + strand at 4378.319 kb on - strand, within mASE1 at 4378.328 kb on + strand, within mASE1 at 4378.329 kb on - strand, within mASE1 at 4378.550 kb on - strand, within mASE1 at 4378.910 kb on - strand, within mASE1 at 4378.916 kb on - strand, within mASE1 at 4378.916 kb on - strand, within mASE1 at 4379.132 kb on - strand, within mASE1 at 4379.282 kb on + strand, within mASE1 at 4379.283 kb on - strand, within mASE1 at 4379.284 kb on + strand, within mASE1 at 4379.284 kb on + strand, within mASE1 at 4379.285 kb on - strand, within mASE1 at 4379.317 kb on + strand, within mASE1 at 4379.404 kb on - strand, within mASE1 at 4379.522 kb on - strand, within mASE1 at 4379.581 kb on + strand, within mASE1 at 4379.582 kb on - strand, within mASE1 at 4379.642 kb on - strand, within mASE1 at 4379.642 kb on - strand, within mASE1 at 4379.648 kb on - strand, within mASE1 at 4379.648 kb on - strand, within mASE1 at 4379.683 kb on + strand, within mASE1 at 4379.684 kb on - strand, within mASE1 at 4380.117 kb on + strand, within mASE1 at 4380.117 kb on + strand, within mASE1 at 4380.118 kb on - strand, within mASE1 at 4380.397 kb on - strand, within mASE1 at 4380.397 kb on - strand, within mASE1 at 4380.628 kb on - strand at 4380.786 kb on - strand, within NIAGMN_22210 at 4380.917 kb on - strand, within NIAGMN_22210 at 4380.932 kb on + strand, within NIAGMN_22210 at 4380.969 kb on - strand, within NIAGMN_22210 at 4381.195 kb on - strand, within NIAGMN_22210 at 4381.308 kb on - strand at 4381.313 kb on - strand at 4381.350 kb on + strand at 4381.361 kb on - strand at 4381.407 kb on - strand at 4381.409 kb on - strand at 4381.575 kb on - strand at 4381.722 kb on - strand, within udk
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,376,961 + +1.2 4,376,980 + -0.4 4,376,995 + -0.4 4,376,995 + +0.2 4,376,995 + +0.1 4,376,995 + -2.8 4,376,997 + -0.2 4,377,141 + alkA NIAGMN_22200 0.18 +0.5 4,377,179 + alkA NIAGMN_22200 0.22 +1.1 4,377,407 + alkA NIAGMN_22200 0.49 -0.0 4,377,445 + alkA NIAGMN_22200 0.53 +0.6 4,377,445 + alkA NIAGMN_22200 0.53 -0.8 4,377,445 + alkA NIAGMN_22200 0.53 +0.1 4,377,445 + alkA NIAGMN_22200 0.53 -1.1 4,377,497 + alkA NIAGMN_22200 0.59 -0.5 4,377,506 + alkA NIAGMN_22200 0.61 +1.1 4,377,510 + alkA NIAGMN_22200 0.61 +1.0 4,377,510 + alkA NIAGMN_22200 0.61 +0.1 4,377,573 - alkA NIAGMN_22200 0.68 -1.3 4,377,757 + -0.2 4,377,801 + +0.9 4,377,808 + -1.6 4,377,810 + +0.8 4,377,810 + +0.6 4,377,810 + +0.9 4,377,947 - -2.2 4,377,958 - +1.1 4,377,965 - -0.2 4,378,144 + +1.5 4,378,145 - -0.4 4,378,145 - +0.1 4,378,186 - -1.8 4,378,195 + +1.2 4,378,319 - mASE1 NIAGMN_22205 0.13 +1.6 4,378,328 + mASE1 NIAGMN_22205 0.14 -1.1 4,378,329 - mASE1 NIAGMN_22205 0.14 -1.7 4,378,550 - mASE1 NIAGMN_22205 0.22 -3.4 4,378,910 - mASE1 NIAGMN_22205 0.35 -0.1 4,378,916 - mASE1 NIAGMN_22205 0.35 -2.3 4,378,916 - mASE1 NIAGMN_22205 0.35 -0.5 4,379,132 - mASE1 NIAGMN_22205 0.42 +0.1 4,379,282 + mASE1 NIAGMN_22205 0.48 -1.7 4,379,283 - mASE1 NIAGMN_22205 0.48 -0.7 4,379,284 + mASE1 NIAGMN_22205 0.48 +0.4 4,379,284 + mASE1 NIAGMN_22205 0.48 -2.5 4,379,285 - mASE1 NIAGMN_22205 0.48 -1.0 4,379,317 + mASE1 NIAGMN_22205 0.49 -0.1 4,379,404 - mASE1 NIAGMN_22205 0.52 +0.1 4,379,522 - mASE1 NIAGMN_22205 0.56 -2.2 4,379,581 + mASE1 NIAGMN_22205 0.58 -0.7 4,379,582 - mASE1 NIAGMN_22205 0.58 +1.0 4,379,642 - mASE1 NIAGMN_22205 0.61 -3.6 4,379,642 - mASE1 NIAGMN_22205 0.61 +0.0 4,379,648 - mASE1 NIAGMN_22205 0.61 +0.5 4,379,648 - mASE1 NIAGMN_22205 0.61 -0.2 4,379,683 + mASE1 NIAGMN_22205 0.62 +0.4 4,379,684 - mASE1 NIAGMN_22205 0.62 +0.8 4,380,117 + mASE1 NIAGMN_22205 0.77 -0.2 4,380,117 + mASE1 NIAGMN_22205 0.77 -0.4 4,380,118 - mASE1 NIAGMN_22205 0.78 +0.7 4,380,397 - mASE1 NIAGMN_22205 0.87 -0.0 4,380,397 - mASE1 NIAGMN_22205 0.87 +0.8 4,380,628 - -1.5 4,380,786 - NIAGMN_22210 0.11 -1.4 4,380,917 - NIAGMN_22210 0.36 -3.4 4,380,932 + NIAGMN_22210 0.39 -2.0 4,380,969 - NIAGMN_22210 0.46 -0.2 4,381,195 - NIAGMN_22210 0.88 +0.6 4,381,308 - +1.5 4,381,313 - +1.0 4,381,350 + -0.4 4,381,361 - -1.5 4,381,407 - -0.5 4,381,409 - +1.0 4,381,575 - +1.6 4,381,722 - udk NIAGMN_22215 0.23 -0.0
Or see this region's nucleotide sequence