Strain Fitness in Escherichia coli ECRC102 around NIAGMN_22060

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfbaB and gatY are separated by 298 nucleotidesgatY and gatZ are separated by 28 nucleotides NIAGMN_22050: fbaB - class I fructose-bisphosphate aldolase, at 4,348,276 to 4,349,328 fbaB NIAGMN_22060: gatY - tagatose-bisphosphate aldolase subunit GatY, at 4,349,627 to 4,350,481 gatY NIAGMN_22065: gatZ - tagatose-bisphosphate aldolase subunit GatZ, at 4,350,510 to 4,351,772 gatZ Position (kb) 4349 4350 4351Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4348.691 kb on + strand, within fbaBat 4348.724 kb on - strand, within fbaBat 4348.780 kb on + strand, within fbaBat 4348.780 kb on + strand, within fbaBat 4348.896 kb on + strand, within fbaBat 4348.967 kb on + strand, within fbaBat 4348.968 kb on - strand, within fbaBat 4349.016 kb on + strand, within fbaBat 4349.017 kb on - strand, within fbaBat 4349.029 kb on + strand, within fbaBat 4349.029 kb on + strand, within fbaBat 4349.063 kb on + strand, within fbaBat 4349.106 kb on + strand, within fbaBat 4349.106 kb on + strand, within fbaBat 4349.106 kb on + strand, within fbaBat 4349.113 kb on + strand, within fbaBat 4349.115 kb on + strand, within fbaBat 4349.238 kb on + strandat 4349.238 kb on + strandat 4349.239 kb on - strandat 4349.316 kb on + strandat 4349.385 kb on + strandat 4349.385 kb on + strandat 4349.385 kb on + strandat 4349.385 kb on + strandat 4349.385 kb on + strandat 4349.386 kb on - strandat 4349.412 kb on + strandat 4349.438 kb on + strandat 4349.438 kb on + strandat 4349.438 kb on + strandat 4349.438 kb on + strandat 4349.438 kb on + strandat 4349.439 kb on - strandat 4349.439 kb on - strandat 4349.439 kb on - strandat 4349.439 kb on - strandat 4349.445 kb on - strandat 4349.460 kb on + strandat 4349.461 kb on - strandat 4349.461 kb on - strandat 4349.731 kb on - strand, within gatYat 4349.789 kb on - strand, within gatYat 4349.789 kb on - strand, within gatYat 4350.169 kb on + strand, within gatYat 4350.169 kb on + strand, within gatYat 4350.169 kb on + strand, within gatYat 4350.170 kb on - strand, within gatYat 4350.170 kb on - strand, within gatYat 4350.173 kb on + strand, within gatYat 4350.173 kb on + strand, within gatYat 4350.174 kb on - strand, within gatYat 4350.174 kb on - strand, within gatYat 4350.480 kb on - strandat 4350.496 kb on - strandat 4350.557 kb on - strandat 4350.847 kb on - strand, within gatZat 4351.006 kb on - strand, within gatZat 4351.148 kb on - strand, within gatZ

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,348,691 + fbaB NIAGMN_22050 0.39 +1.1
4,348,724 - fbaB NIAGMN_22050 0.43 -0.1
4,348,780 + fbaB NIAGMN_22050 0.48 -0.4
4,348,780 + fbaB NIAGMN_22050 0.48 -1.3
4,348,896 + fbaB NIAGMN_22050 0.59 -1.8
4,348,967 + fbaB NIAGMN_22050 0.66 -1.3
4,348,968 - fbaB NIAGMN_22050 0.66 -1.4
4,349,016 + fbaB NIAGMN_22050 0.70 +0.2
4,349,017 - fbaB NIAGMN_22050 0.70 +0.1
4,349,029 + fbaB NIAGMN_22050 0.72 -0.8
4,349,029 + fbaB NIAGMN_22050 0.72 +0.2
4,349,063 + fbaB NIAGMN_22050 0.75 +0.3
4,349,106 + fbaB NIAGMN_22050 0.79 -0.7
4,349,106 + fbaB NIAGMN_22050 0.79 +0.8
4,349,106 + fbaB NIAGMN_22050 0.79 -2.3
4,349,113 + fbaB NIAGMN_22050 0.79 -2.6
4,349,115 + fbaB NIAGMN_22050 0.80 +2.2
4,349,238 + +0.1
4,349,238 + -1.9
4,349,239 - +2.2
4,349,316 + -0.4
4,349,385 + +0.4
4,349,385 + +0.1
4,349,385 + +1.1
4,349,385 + -2.5
4,349,385 + +0.9
4,349,386 - -0.3
4,349,412 + +0.0
4,349,438 + -0.6
4,349,438 + -1.3
4,349,438 + +0.5
4,349,438 + -1.0
4,349,438 + -0.1
4,349,439 - +0.1
4,349,439 - -1.6
4,349,439 - +0.4
4,349,439 - +0.3
4,349,445 - +0.5
4,349,460 + +1.0
4,349,461 - +0.7
4,349,461 - +0.1
4,349,731 - gatY NIAGMN_22060 0.12 -1.9
4,349,789 - gatY NIAGMN_22060 0.19 +0.5
4,349,789 - gatY NIAGMN_22060 0.19 +0.8
4,350,169 + gatY NIAGMN_22060 0.63 -0.1
4,350,169 + gatY NIAGMN_22060 0.63 -1.5
4,350,169 + gatY NIAGMN_22060 0.63 -0.2
4,350,170 - gatY NIAGMN_22060 0.64 -1.1
4,350,170 - gatY NIAGMN_22060 0.64 -1.5
4,350,173 + gatY NIAGMN_22060 0.64 -2.1
4,350,173 + gatY NIAGMN_22060 0.64 +0.3
4,350,174 - gatY NIAGMN_22060 0.64 +3.2
4,350,174 - gatY NIAGMN_22060 0.64 -0.3
4,350,480 - -1.6
4,350,496 - -0.3
4,350,557 - +0.8
4,350,847 - gatZ NIAGMN_22065 0.27 +1.1
4,351,006 - gatZ NIAGMN_22065 0.39 -0.4
4,351,148 - gatZ NIAGMN_22065 0.51 -0.1

Or see this region's nucleotide sequence