Strain Fitness in Escherichia coli ECRC102 around NIAGMN_22045

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_22040 and yegT overlap by 4 nucleotidesyegT and fbaB are separated by 256 nucleotides NIAGMN_22035: yegV - Uncharacterized sugar kinase YegV, at 4,344,779 to 4,345,744 yegV NIAGMN_22040: NIAGMN_22040 - ADP-ribosylglycohydrolase family protein, at 4,345,741 to 4,346,745 _22040 NIAGMN_22045: yegT - Putative nucleoside transporter YegT, at 4,346,742 to 4,348,019 yegT NIAGMN_22050: fbaB - class I fructose-bisphosphate aldolase, at 4,348,276 to 4,349,328 fbaB Position (kb) 4346 4347 4348 4349Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4345.788 kb on - strandat 4346.008 kb on - strand, within NIAGMN_22040at 4346.286 kb on + strand, within NIAGMN_22040at 4346.287 kb on - strand, within NIAGMN_22040at 4346.327 kb on - strand, within NIAGMN_22040at 4346.435 kb on - strand, within NIAGMN_22040at 4346.731 kb on - strandat 4347.018 kb on - strand, within yegTat 4347.024 kb on - strand, within yegTat 4347.050 kb on - strand, within yegTat 4347.056 kb on - strand, within yegTat 4347.085 kb on - strand, within yegTat 4347.131 kb on - strand, within yegTat 4347.144 kb on - strand, within yegTat 4347.153 kb on - strand, within yegTat 4347.246 kb on - strand, within yegTat 4347.335 kb on - strand, within yegTat 4347.706 kb on + strand, within yegTat 4347.706 kb on + strand, within yegTat 4347.706 kb on + strand, within yegTat 4347.707 kb on - strand, within yegTat 4347.707 kb on - strand, within yegTat 4347.707 kb on - strand, within yegTat 4347.719 kb on - strand, within yegTat 4347.929 kb on + strandat 4347.934 kb on - strandat 4348.203 kb on + strandat 4348.204 kb on - strandat 4348.271 kb on + strandat 4348.272 kb on - strandat 4348.335 kb on + strandat 4348.336 kb on - strandat 4348.336 kb on - strandat 4348.342 kb on - strandat 4348.360 kb on + strandat 4348.360 kb on + strandat 4348.378 kb on + strandat 4348.379 kb on - strandat 4348.382 kb on + strand, within fbaBat 4348.382 kb on + strand, within fbaBat 4348.425 kb on - strand, within fbaBat 4348.425 kb on - strand, within fbaBat 4348.428 kb on + strand, within fbaBat 4348.428 kb on + strand, within fbaBat 4348.429 kb on - strand, within fbaBat 4348.429 kb on - strand, within fbaBat 4348.431 kb on + strand, within fbaBat 4348.444 kb on + strand, within fbaBat 4348.445 kb on - strand, within fbaBat 4348.483 kb on - strand, within fbaBat 4348.691 kb on + strand, within fbaBat 4348.724 kb on - strand, within fbaBat 4348.780 kb on + strand, within fbaBat 4348.780 kb on + strand, within fbaBat 4348.896 kb on + strand, within fbaBat 4348.967 kb on + strand, within fbaBat 4348.968 kb on - strand, within fbaBat 4349.016 kb on + strand, within fbaBat 4349.017 kb on - strand, within fbaB

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,345,788 - +0.7
4,346,008 - NIAGMN_22040 0.27 -0.6
4,346,286 + NIAGMN_22040 0.54 +0.5
4,346,287 - NIAGMN_22040 0.54 +1.3
4,346,327 - NIAGMN_22040 0.58 -0.7
4,346,435 - NIAGMN_22040 0.69 -0.3
4,346,731 - +1.1
4,347,018 - yegT NIAGMN_22045 0.22 +0.2
4,347,024 - yegT NIAGMN_22045 0.22 -0.0
4,347,050 - yegT NIAGMN_22045 0.24 +0.9
4,347,056 - yegT NIAGMN_22045 0.25 -0.9
4,347,085 - yegT NIAGMN_22045 0.27 +0.3
4,347,131 - yegT NIAGMN_22045 0.30 -0.5
4,347,144 - yegT NIAGMN_22045 0.31 -1.9
4,347,153 - yegT NIAGMN_22045 0.32 -1.2
4,347,246 - yegT NIAGMN_22045 0.39 +3.1
4,347,335 - yegT NIAGMN_22045 0.46 -1.1
4,347,706 + yegT NIAGMN_22045 0.75 +1.2
4,347,706 + yegT NIAGMN_22045 0.75 -0.0
4,347,706 + yegT NIAGMN_22045 0.75 -0.7
4,347,707 - yegT NIAGMN_22045 0.76 +1.9
4,347,707 - yegT NIAGMN_22045 0.76 +1.1
4,347,707 - yegT NIAGMN_22045 0.76 -1.3
4,347,719 - yegT NIAGMN_22045 0.76 -0.3
4,347,929 + +0.2
4,347,934 - -0.1
4,348,203 + +0.2
4,348,204 - -0.5
4,348,271 + -0.3
4,348,272 - -0.1
4,348,335 + +0.9
4,348,336 - +2.1
4,348,336 - +1.1
4,348,342 - -0.8
4,348,360 + +0.3
4,348,360 + -1.1
4,348,378 + +1.5
4,348,379 - -0.8
4,348,382 + fbaB NIAGMN_22050 0.10 +0.9
4,348,382 + fbaB NIAGMN_22050 0.10 -1.0
4,348,425 - fbaB NIAGMN_22050 0.14 -0.3
4,348,425 - fbaB NIAGMN_22050 0.14 -0.6
4,348,428 + fbaB NIAGMN_22050 0.14 -0.0
4,348,428 + fbaB NIAGMN_22050 0.14 +1.0
4,348,429 - fbaB NIAGMN_22050 0.15 -0.6
4,348,429 - fbaB NIAGMN_22050 0.15 -2.0
4,348,431 + fbaB NIAGMN_22050 0.15 -0.6
4,348,444 + fbaB NIAGMN_22050 0.16 -0.5
4,348,445 - fbaB NIAGMN_22050 0.16 -0.2
4,348,483 - fbaB NIAGMN_22050 0.20 -0.2
4,348,691 + fbaB NIAGMN_22050 0.39 +1.1
4,348,724 - fbaB NIAGMN_22050 0.43 -0.1
4,348,780 + fbaB NIAGMN_22050 0.48 -0.4
4,348,780 + fbaB NIAGMN_22050 0.48 -1.3
4,348,896 + fbaB NIAGMN_22050 0.59 -1.8
4,348,967 + fbaB NIAGMN_22050 0.66 -1.3
4,348,968 - fbaB NIAGMN_22050 0.66 -1.4
4,349,016 + fbaB NIAGMN_22050 0.70 +0.2
4,349,017 - fbaB NIAGMN_22050 0.70 +0.1

Or see this region's nucleotide sequence