Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lysR and uhpC are separated by 126 nucleotides uhpC and gtdA are separated by 11 nucleotides
NIAGMN_21350: lysR - transcriptional regulator, at 4,234,871 to 4,235,779
lysR
NIAGMN_21355: uhpC - aromatic acid/H+ symport family MFS transporter, at 4,235,906 to 4,237,264
uhpC
NIAGMN_21360: gtdA - gentisate 1,2-dioxygenase, at 4,237,276 to 4,238,304
gtdA
Position (kb) 4235
4236
4237
4238 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4234.965 kb on - strand, within lysR at 4235.036 kb on - strand, within lysR at 4235.045 kb on - strand, within lysR at 4235.069 kb on - strand, within lysR at 4235.144 kb on - strand, within lysR at 4235.146 kb on + strand, within lysR at 4235.147 kb on - strand, within lysR at 4235.284 kb on - strand, within lysR at 4235.352 kb on - strand, within lysR at 4235.400 kb on - strand, within lysR at 4235.416 kb on + strand, within lysR at 4235.595 kb on - strand, within lysR at 4235.595 kb on - strand, within lysR at 4235.681 kb on - strand, within lysR at 4235.706 kb on - strand at 4235.751 kb on - strand at 4235.879 kb on + strand at 4235.902 kb on + strand at 4235.902 kb on + strand at 4235.902 kb on + strand at 4235.926 kb on - strand at 4235.935 kb on + strand at 4236.717 kb on - strand, within uhpC at 4236.717 kb on - strand, within uhpC at 4236.745 kb on - strand, within uhpC at 4236.812 kb on - strand, within uhpC at 4236.817 kb on - strand, within uhpC at 4236.817 kb on - strand, within uhpC at 4236.847 kb on + strand, within uhpC at 4236.848 kb on - strand, within uhpC at 4236.881 kb on + strand, within uhpC at 4236.881 kb on + strand, within uhpC at 4236.882 kb on - strand, within uhpC at 4236.895 kb on + strand, within uhpC at 4236.895 kb on + strand, within uhpC at 4236.897 kb on + strand, within uhpC at 4236.898 kb on - strand, within uhpC at 4236.933 kb on + strand, within uhpC at 4236.933 kb on + strand, within uhpC at 4237.262 kb on + strand at 4237.320 kb on + strand at 4237.320 kb on + strand at 4237.321 kb on - strand at 4237.389 kb on + strand, within gtdA at 4237.389 kb on + strand, within gtdA at 4237.538 kb on + strand, within gtdA at 4237.538 kb on + strand, within gtdA at 4237.538 kb on + strand, within gtdA at 4237.538 kb on + strand, within gtdA at 4237.540 kb on + strand, within gtdA at 4237.540 kb on + strand, within gtdA at 4237.540 kb on + strand, within gtdA at 4237.683 kb on + strand, within gtdA at 4237.683 kb on + strand, within gtdA at 4237.833 kb on + strand, within gtdA at 4237.918 kb on + strand, within gtdA at 4237.918 kb on + strand, within gtdA at 4237.918 kb on + strand, within gtdA at 4237.919 kb on - strand, within gtdA at 4237.990 kb on + strand, within gtdA at 4237.990 kb on + strand, within gtdA at 4238.003 kb on - strand, within gtdA at 4238.113 kb on + strand, within gtdA at 4238.113 kb on + strand, within gtdA at 4238.113 kb on + strand, within gtdA at 4238.113 kb on + strand, within gtdA at 4238.113 kb on + strand, within gtdA at 4238.113 kb on + strand, within gtdA at 4238.113 kb on + strand, within gtdA at 4238.113 kb on + strand, within gtdA at 4238.113 kb on + strand, within gtdA at 4238.114 kb on - strand, within gtdA at 4238.114 kb on - strand, within gtdA at 4238.114 kb on - strand, within gtdA at 4238.114 kb on - strand, within gtdA at 4238.114 kb on - strand, within gtdA at 4238.131 kb on - strand, within gtdA at 4238.169 kb on + strand, within gtdA at 4238.181 kb on + strand, within gtdA at 4238.241 kb on - strand at 4238.245 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,234,965 - lysR NIAGMN_21350 0.10 -0.5 4,235,036 - lysR NIAGMN_21350 0.18 +0.3 4,235,045 - lysR NIAGMN_21350 0.19 +2.1 4,235,069 - lysR NIAGMN_21350 0.22 -2.5 4,235,144 - lysR NIAGMN_21350 0.30 -0.3 4,235,146 + lysR NIAGMN_21350 0.30 -0.9 4,235,147 - lysR NIAGMN_21350 0.30 -0.7 4,235,284 - lysR NIAGMN_21350 0.45 +0.2 4,235,352 - lysR NIAGMN_21350 0.53 -0.8 4,235,400 - lysR NIAGMN_21350 0.58 -0.9 4,235,416 + lysR NIAGMN_21350 0.60 -0.1 4,235,595 - lysR NIAGMN_21350 0.80 -0.2 4,235,595 - lysR NIAGMN_21350 0.80 -0.0 4,235,681 - lysR NIAGMN_21350 0.89 +1.2 4,235,706 - +0.2 4,235,751 - -0.1 4,235,879 + +0.1 4,235,902 + +1.4 4,235,902 + +0.7 4,235,902 + +0.2 4,235,926 - +1.1 4,235,935 + -0.5 4,236,717 - uhpC NIAGMN_21355 0.60 +0.4 4,236,717 - uhpC NIAGMN_21355 0.60 +0.5 4,236,745 - uhpC NIAGMN_21355 0.62 -0.3 4,236,812 - uhpC NIAGMN_21355 0.67 -0.1 4,236,817 - uhpC NIAGMN_21355 0.67 +0.9 4,236,817 - uhpC NIAGMN_21355 0.67 -2.3 4,236,847 + uhpC NIAGMN_21355 0.69 +0.4 4,236,848 - uhpC NIAGMN_21355 0.69 +0.3 4,236,881 + uhpC NIAGMN_21355 0.72 -0.7 4,236,881 + uhpC NIAGMN_21355 0.72 -0.8 4,236,882 - uhpC NIAGMN_21355 0.72 +0.1 4,236,895 + uhpC NIAGMN_21355 0.73 -2.5 4,236,895 + uhpC NIAGMN_21355 0.73 -1.7 4,236,897 + uhpC NIAGMN_21355 0.73 +1.1 4,236,898 - uhpC NIAGMN_21355 0.73 +1.1 4,236,933 + uhpC NIAGMN_21355 0.76 -2.4 4,236,933 + uhpC NIAGMN_21355 0.76 +0.5 4,237,262 + +1.0 4,237,320 + -1.5 4,237,320 + +0.7 4,237,321 - -0.2 4,237,389 + gtdA NIAGMN_21360 0.11 +1.0 4,237,389 + gtdA NIAGMN_21360 0.11 -0.5 4,237,538 + gtdA NIAGMN_21360 0.25 -2.3 4,237,538 + gtdA NIAGMN_21360 0.25 -0.7 4,237,538 + gtdA NIAGMN_21360 0.25 -0.5 4,237,538 + gtdA NIAGMN_21360 0.25 +1.3 4,237,540 + gtdA NIAGMN_21360 0.26 -0.4 4,237,540 + gtdA NIAGMN_21360 0.26 +0.5 4,237,540 + gtdA NIAGMN_21360 0.26 -2.0 4,237,683 + gtdA NIAGMN_21360 0.40 -0.2 4,237,683 + gtdA NIAGMN_21360 0.40 -1.0 4,237,833 + gtdA NIAGMN_21360 0.54 -0.7 4,237,918 + gtdA NIAGMN_21360 0.62 -2.9 4,237,918 + gtdA NIAGMN_21360 0.62 -0.0 4,237,918 + gtdA NIAGMN_21360 0.62 -0.7 4,237,919 - gtdA NIAGMN_21360 0.62 -0.5 4,237,990 + gtdA NIAGMN_21360 0.69 +0.2 4,237,990 + gtdA NIAGMN_21360 0.69 +0.9 4,238,003 - gtdA NIAGMN_21360 0.71 -0.4 4,238,113 + gtdA NIAGMN_21360 0.81 +0.3 4,238,113 + gtdA NIAGMN_21360 0.81 -0.8 4,238,113 + gtdA NIAGMN_21360 0.81 -0.1 4,238,113 + gtdA NIAGMN_21360 0.81 +1.3 4,238,113 + gtdA NIAGMN_21360 0.81 +0.3 4,238,113 + gtdA NIAGMN_21360 0.81 +0.0 4,238,113 + gtdA NIAGMN_21360 0.81 -0.9 4,238,113 + gtdA NIAGMN_21360 0.81 -0.2 4,238,113 + gtdA NIAGMN_21360 0.81 +0.4 4,238,114 - gtdA NIAGMN_21360 0.81 +0.9 4,238,114 - gtdA NIAGMN_21360 0.81 -1.0 4,238,114 - gtdA NIAGMN_21360 0.81 -0.4 4,238,114 - gtdA NIAGMN_21360 0.81 +0.5 4,238,114 - gtdA NIAGMN_21360 0.81 -1.3 4,238,131 - gtdA NIAGMN_21360 0.83 +0.0 4,238,169 + gtdA NIAGMN_21360 0.87 -2.5 4,238,181 + gtdA NIAGMN_21360 0.88 -1.1 4,238,241 - +0.4 4,238,245 - +1.4
Or see this region's nucleotide sequence