Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arnA and arnC overlap by 1 nucleotides arnC and arnB are separated by 3 nucleotides
NIAGMN_20755: arnA - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 4,101,137 to 4,103,119
arnA
NIAGMN_20760: arnC - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 4,103,119 to 4,104,087
arnC
NIAGMN_20765: arnB - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 4,104,091 to 4,105,248
arnB
Position (kb)
4103
4104
4105 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4102.141 kb on + strand, within arnA at 4102.204 kb on + strand, within arnA at 4102.261 kb on + strand, within arnA at 4102.261 kb on + strand, within arnA at 4102.262 kb on - strand, within arnA at 4102.264 kb on + strand, within arnA at 4102.264 kb on + strand, within arnA at 4102.419 kb on + strand, within arnA at 4102.420 kb on - strand, within arnA at 4102.420 kb on - strand, within arnA at 4102.420 kb on - strand, within arnA at 4102.458 kb on - strand, within arnA at 4102.567 kb on + strand, within arnA at 4102.589 kb on + strand, within arnA at 4102.630 kb on + strand, within arnA at 4102.642 kb on + strand, within arnA at 4102.643 kb on - strand, within arnA at 4102.817 kb on - strand, within arnA at 4102.817 kb on - strand, within arnA at 4102.817 kb on - strand, within arnA at 4102.858 kb on + strand, within arnA at 4102.859 kb on - strand, within arnA at 4102.859 kb on - strand, within arnA at 4102.873 kb on - strand, within arnA at 4102.995 kb on + strand at 4103.192 kb on + strand at 4103.248 kb on - strand, within arnC at 4103.270 kb on - strand, within arnC at 4103.386 kb on - strand, within arnC at 4103.386 kb on - strand, within arnC at 4103.386 kb on - strand, within arnC at 4103.386 kb on - strand, within arnC at 4103.386 kb on - strand, within arnC at 4103.390 kb on - strand, within arnC at 4103.446 kb on - strand, within arnC at 4103.469 kb on - strand, within arnC at 4103.580 kb on + strand, within arnC at 4103.800 kb on - strand, within arnC at 4103.875 kb on - strand, within arnC at 4103.879 kb on - strand, within arnC at 4103.879 kb on - strand, within arnC at 4103.883 kb on + strand, within arnC at 4103.883 kb on + strand, within arnC at 4103.918 kb on - strand, within arnC at 4103.920 kb on - strand, within arnC at 4103.920 kb on - strand, within arnC at 4103.966 kb on + strand, within arnC at 4104.039 kb on - strand at 4104.093 kb on - strand at 4104.280 kb on - strand, within arnB at 4104.351 kb on + strand, within arnB at 4104.352 kb on - strand, within arnB at 4104.431 kb on + strand, within arnB at 4104.524 kb on + strand, within arnB at 4104.529 kb on - strand, within arnB at 4104.542 kb on - strand, within arnB at 4104.652 kb on - strand, within arnB at 4104.678 kb on + strand, within arnB at 4104.729 kb on + strand, within arnB at 4104.746 kb on + strand, within arnB at 4104.746 kb on + strand, within arnB at 4104.747 kb on - strand, within arnB at 4104.750 kb on + strand, within arnB at 4104.750 kb on + strand, within arnB at 4104.751 kb on - strand, within arnB at 4104.778 kb on - strand, within arnB at 4104.819 kb on + strand, within arnB at 4104.823 kb on - strand, within arnB at 4104.967 kb on - strand, within arnB at 4105.044 kb on + strand, within arnB at 4105.044 kb on + strand, within arnB at 4105.045 kb on - strand, within arnB at 4105.045 kb on - strand, within arnB
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,102,141 + arnA NIAGMN_20755 0.51 +1.4 4,102,204 + arnA NIAGMN_20755 0.54 -1.0 4,102,261 + arnA NIAGMN_20755 0.57 +0.7 4,102,261 + arnA NIAGMN_20755 0.57 -1.8 4,102,262 - arnA NIAGMN_20755 0.57 -0.6 4,102,264 + arnA NIAGMN_20755 0.57 +0.5 4,102,264 + arnA NIAGMN_20755 0.57 -0.5 4,102,419 + arnA NIAGMN_20755 0.65 -0.3 4,102,420 - arnA NIAGMN_20755 0.65 -2.7 4,102,420 - arnA NIAGMN_20755 0.65 +0.3 4,102,420 - arnA NIAGMN_20755 0.65 -0.2 4,102,458 - arnA NIAGMN_20755 0.67 +1.5 4,102,567 + arnA NIAGMN_20755 0.72 +1.7 4,102,589 + arnA NIAGMN_20755 0.73 -1.7 4,102,630 + arnA NIAGMN_20755 0.75 -0.5 4,102,642 + arnA NIAGMN_20755 0.76 +1.8 4,102,643 - arnA NIAGMN_20755 0.76 -0.5 4,102,817 - arnA NIAGMN_20755 0.85 +1.0 4,102,817 - arnA NIAGMN_20755 0.85 +1.4 4,102,817 - arnA NIAGMN_20755 0.85 +0.3 4,102,858 + arnA NIAGMN_20755 0.87 -0.4 4,102,859 - arnA NIAGMN_20755 0.87 +0.2 4,102,859 - arnA NIAGMN_20755 0.87 +1.0 4,102,873 - arnA NIAGMN_20755 0.88 +1.4 4,102,995 + +0.6 4,103,192 + -1.3 4,103,248 - arnC NIAGMN_20760 0.13 -0.0 4,103,270 - arnC NIAGMN_20760 0.16 +0.3 4,103,386 - arnC NIAGMN_20760 0.28 -0.5 4,103,386 - arnC NIAGMN_20760 0.28 +0.7 4,103,386 - arnC NIAGMN_20760 0.28 -1.3 4,103,386 - arnC NIAGMN_20760 0.28 +0.9 4,103,386 - arnC NIAGMN_20760 0.28 -0.0 4,103,390 - arnC NIAGMN_20760 0.28 -1.9 4,103,446 - arnC NIAGMN_20760 0.34 -1.9 4,103,469 - arnC NIAGMN_20760 0.36 +0.4 4,103,580 + arnC NIAGMN_20760 0.48 +0.8 4,103,800 - arnC NIAGMN_20760 0.70 -1.9 4,103,875 - arnC NIAGMN_20760 0.78 +0.2 4,103,879 - arnC NIAGMN_20760 0.78 +0.2 4,103,879 - arnC NIAGMN_20760 0.78 -0.8 4,103,883 + arnC NIAGMN_20760 0.79 +1.4 4,103,883 + arnC NIAGMN_20760 0.79 +0.1 4,103,918 - arnC NIAGMN_20760 0.82 +0.1 4,103,920 - arnC NIAGMN_20760 0.83 +0.5 4,103,920 - arnC NIAGMN_20760 0.83 +0.3 4,103,966 + arnC NIAGMN_20760 0.87 -2.0 4,104,039 - +1.5 4,104,093 - -0.5 4,104,280 - arnB NIAGMN_20765 0.16 +0.8 4,104,351 + arnB NIAGMN_20765 0.22 -0.7 4,104,352 - arnB NIAGMN_20765 0.23 +1.4 4,104,431 + arnB NIAGMN_20765 0.29 +0.8 4,104,524 + arnB NIAGMN_20765 0.37 -0.1 4,104,529 - arnB NIAGMN_20765 0.38 -0.6 4,104,542 - arnB NIAGMN_20765 0.39 -0.4 4,104,652 - arnB NIAGMN_20765 0.48 -0.2 4,104,678 + arnB NIAGMN_20765 0.51 -0.4 4,104,729 + arnB NIAGMN_20765 0.55 -0.2 4,104,746 + arnB NIAGMN_20765 0.57 -0.2 4,104,746 + arnB NIAGMN_20765 0.57 +1.5 4,104,747 - arnB NIAGMN_20765 0.57 -1.7 4,104,750 + arnB NIAGMN_20765 0.57 -2.3 4,104,750 + arnB NIAGMN_20765 0.57 -1.6 4,104,751 - arnB NIAGMN_20765 0.57 +0.0 4,104,778 - arnB NIAGMN_20765 0.59 -0.6 4,104,819 + arnB NIAGMN_20765 0.63 +0.2 4,104,823 - arnB NIAGMN_20765 0.63 +2.5 4,104,967 - arnB NIAGMN_20765 0.76 +1.4 4,105,044 + arnB NIAGMN_20765 0.82 +0.6 4,105,044 + arnB NIAGMN_20765 0.82 -0.4 4,105,045 - arnB NIAGMN_20765 0.82 +1.7 4,105,045 - arnB NIAGMN_20765 0.82 +3.0
Or see this region's nucleotide sequence