Strain Fitness in Escherichia coli ECRC102 around NIAGMN_20760

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntarnA and arnC overlap by 1 nucleotidesarnC and arnB are separated by 3 nucleotides NIAGMN_20755: arnA - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 4,101,137 to 4,103,119 arnA NIAGMN_20760: arnC - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 4,103,119 to 4,104,087 arnC NIAGMN_20765: arnB - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 4,104,091 to 4,105,248 arnB Position (kb) 4103 4104 4105Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4102.141 kb on + strand, within arnAat 4102.204 kb on + strand, within arnAat 4102.261 kb on + strand, within arnAat 4102.261 kb on + strand, within arnAat 4102.262 kb on - strand, within arnAat 4102.264 kb on + strand, within arnAat 4102.264 kb on + strand, within arnAat 4102.419 kb on + strand, within arnAat 4102.420 kb on - strand, within arnAat 4102.420 kb on - strand, within arnAat 4102.420 kb on - strand, within arnAat 4102.458 kb on - strand, within arnAat 4102.567 kb on + strand, within arnAat 4102.589 kb on + strand, within arnAat 4102.630 kb on + strand, within arnAat 4102.642 kb on + strand, within arnAat 4102.643 kb on - strand, within arnAat 4102.817 kb on - strand, within arnAat 4102.817 kb on - strand, within arnAat 4102.817 kb on - strand, within arnAat 4102.858 kb on + strand, within arnAat 4102.859 kb on - strand, within arnAat 4102.859 kb on - strand, within arnAat 4102.873 kb on - strand, within arnAat 4102.995 kb on + strandat 4103.192 kb on + strandat 4103.248 kb on - strand, within arnCat 4103.270 kb on - strand, within arnCat 4103.386 kb on - strand, within arnCat 4103.386 kb on - strand, within arnCat 4103.386 kb on - strand, within arnCat 4103.386 kb on - strand, within arnCat 4103.386 kb on - strand, within arnCat 4103.390 kb on - strand, within arnCat 4103.446 kb on - strand, within arnCat 4103.469 kb on - strand, within arnCat 4103.580 kb on + strand, within arnCat 4103.800 kb on - strand, within arnCat 4103.875 kb on - strand, within arnCat 4103.879 kb on - strand, within arnCat 4103.879 kb on - strand, within arnCat 4103.883 kb on + strand, within arnCat 4103.883 kb on + strand, within arnCat 4103.918 kb on - strand, within arnCat 4103.920 kb on - strand, within arnCat 4103.920 kb on - strand, within arnCat 4103.966 kb on + strand, within arnCat 4104.039 kb on - strandat 4104.093 kb on - strandat 4104.280 kb on - strand, within arnBat 4104.351 kb on + strand, within arnBat 4104.352 kb on - strand, within arnBat 4104.431 kb on + strand, within arnBat 4104.524 kb on + strand, within arnBat 4104.529 kb on - strand, within arnBat 4104.542 kb on - strand, within arnBat 4104.652 kb on - strand, within arnBat 4104.678 kb on + strand, within arnBat 4104.729 kb on + strand, within arnBat 4104.746 kb on + strand, within arnBat 4104.746 kb on + strand, within arnBat 4104.747 kb on - strand, within arnBat 4104.750 kb on + strand, within arnBat 4104.750 kb on + strand, within arnBat 4104.751 kb on - strand, within arnBat 4104.778 kb on - strand, within arnBat 4104.819 kb on + strand, within arnBat 4104.823 kb on - strand, within arnBat 4104.967 kb on - strand, within arnBat 4105.044 kb on + strand, within arnBat 4105.044 kb on + strand, within arnBat 4105.045 kb on - strand, within arnBat 4105.045 kb on - strand, within arnB

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,102,141 + arnA NIAGMN_20755 0.51 +1.4
4,102,204 + arnA NIAGMN_20755 0.54 -1.0
4,102,261 + arnA NIAGMN_20755 0.57 +0.7
4,102,261 + arnA NIAGMN_20755 0.57 -1.8
4,102,262 - arnA NIAGMN_20755 0.57 -0.6
4,102,264 + arnA NIAGMN_20755 0.57 +0.5
4,102,264 + arnA NIAGMN_20755 0.57 -0.5
4,102,419 + arnA NIAGMN_20755 0.65 -0.3
4,102,420 - arnA NIAGMN_20755 0.65 -2.7
4,102,420 - arnA NIAGMN_20755 0.65 +0.3
4,102,420 - arnA NIAGMN_20755 0.65 -0.2
4,102,458 - arnA NIAGMN_20755 0.67 +1.5
4,102,567 + arnA NIAGMN_20755 0.72 +1.7
4,102,589 + arnA NIAGMN_20755 0.73 -1.7
4,102,630 + arnA NIAGMN_20755 0.75 -0.5
4,102,642 + arnA NIAGMN_20755 0.76 +1.8
4,102,643 - arnA NIAGMN_20755 0.76 -0.5
4,102,817 - arnA NIAGMN_20755 0.85 +1.0
4,102,817 - arnA NIAGMN_20755 0.85 +1.4
4,102,817 - arnA NIAGMN_20755 0.85 +0.3
4,102,858 + arnA NIAGMN_20755 0.87 -0.4
4,102,859 - arnA NIAGMN_20755 0.87 +0.2
4,102,859 - arnA NIAGMN_20755 0.87 +1.0
4,102,873 - arnA NIAGMN_20755 0.88 +1.4
4,102,995 + +0.6
4,103,192 + -1.3
4,103,248 - arnC NIAGMN_20760 0.13 -0.0
4,103,270 - arnC NIAGMN_20760 0.16 +0.3
4,103,386 - arnC NIAGMN_20760 0.28 -0.5
4,103,386 - arnC NIAGMN_20760 0.28 +0.7
4,103,386 - arnC NIAGMN_20760 0.28 -1.3
4,103,386 - arnC NIAGMN_20760 0.28 +0.9
4,103,386 - arnC NIAGMN_20760 0.28 -0.0
4,103,390 - arnC NIAGMN_20760 0.28 -1.9
4,103,446 - arnC NIAGMN_20760 0.34 -1.9
4,103,469 - arnC NIAGMN_20760 0.36 +0.4
4,103,580 + arnC NIAGMN_20760 0.48 +0.8
4,103,800 - arnC NIAGMN_20760 0.70 -1.9
4,103,875 - arnC NIAGMN_20760 0.78 +0.2
4,103,879 - arnC NIAGMN_20760 0.78 +0.2
4,103,879 - arnC NIAGMN_20760 0.78 -0.8
4,103,883 + arnC NIAGMN_20760 0.79 +1.4
4,103,883 + arnC NIAGMN_20760 0.79 +0.1
4,103,918 - arnC NIAGMN_20760 0.82 +0.1
4,103,920 - arnC NIAGMN_20760 0.83 +0.5
4,103,920 - arnC NIAGMN_20760 0.83 +0.3
4,103,966 + arnC NIAGMN_20760 0.87 -2.0
4,104,039 - +1.5
4,104,093 - -0.5
4,104,280 - arnB NIAGMN_20765 0.16 +0.8
4,104,351 + arnB NIAGMN_20765 0.22 -0.7
4,104,352 - arnB NIAGMN_20765 0.23 +1.4
4,104,431 + arnB NIAGMN_20765 0.29 +0.8
4,104,524 + arnB NIAGMN_20765 0.37 -0.1
4,104,529 - arnB NIAGMN_20765 0.38 -0.6
4,104,542 - arnB NIAGMN_20765 0.39 -0.4
4,104,652 - arnB NIAGMN_20765 0.48 -0.2
4,104,678 + arnB NIAGMN_20765 0.51 -0.4
4,104,729 + arnB NIAGMN_20765 0.55 -0.2
4,104,746 + arnB NIAGMN_20765 0.57 -0.2
4,104,746 + arnB NIAGMN_20765 0.57 +1.5
4,104,747 - arnB NIAGMN_20765 0.57 -1.7
4,104,750 + arnB NIAGMN_20765 0.57 -2.3
4,104,750 + arnB NIAGMN_20765 0.57 -1.6
4,104,751 - arnB NIAGMN_20765 0.57 +0.0
4,104,778 - arnB NIAGMN_20765 0.59 -0.6
4,104,819 + arnB NIAGMN_20765 0.63 +0.2
4,104,823 - arnB NIAGMN_20765 0.63 +2.5
4,104,967 - arnB NIAGMN_20765 0.76 +1.4
4,105,044 + arnB NIAGMN_20765 0.82 +0.6
4,105,044 + arnB NIAGMN_20765 0.82 -0.4
4,105,045 - arnB NIAGMN_20765 0.82 +1.7
4,105,045 - arnB NIAGMN_20765 0.82 +3.0

Or see this region's nucleotide sequence