Strain Fitness in Escherichia coli ECRC102 around NIAGMN_20420

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmnmC and fabB are separated by 158 nucleotidesfabB and yfcJ are separated by 274 nucleotides NIAGMN_20415: mnmC - bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC, at 4,031,539 to 4,033,545 mnmC NIAGMN_20420: fabB - beta-ketoacyl-ACP synthase I, at 4,033,704 to 4,034,924 fabB NIAGMN_20425: yfcJ - Uncharacterized MFS-type transporter YfcJ, at 4,035,199 to 4,036,377 yfcJ Position (kb) 4033 4034 4035Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4032.775 kb on - strand, within mnmCat 4032.803 kb on - strand, within mnmCat 4032.803 kb on - strand, within mnmCat 4032.915 kb on + strand, within mnmCat 4032.916 kb on - strand, within mnmCat 4032.916 kb on - strand, within mnmCat 4032.916 kb on - strand, within mnmCat 4033.030 kb on + strand, within mnmCat 4033.031 kb on - strand, within mnmCat 4033.075 kb on - strand, within mnmCat 4033.121 kb on - strand, within mnmCat 4033.124 kb on - strand, within mnmCat 4033.124 kb on - strand, within mnmCat 4033.270 kb on + strand, within mnmCat 4033.333 kb on + strand, within mnmCat 4033.361 kb on - strandat 4033.428 kb on - strandat 4033.494 kb on + strandat 4033.506 kb on + strandat 4033.507 kb on - strandat 4033.528 kb on + strandat 4033.528 kb on + strandat 4033.547 kb on + strandat 4033.552 kb on + strandat 4033.571 kb on - strandat 4033.616 kb on + strandat 4033.674 kb on + strandat 4033.674 kb on + strandat 4033.674 kb on + strandat 4034.943 kb on - strandat 4035.209 kb on + strandat 4035.210 kb on - strandat 4035.280 kb on + strandat 4035.281 kb on - strandat 4035.281 kb on - strandat 4035.281 kb on - strandat 4035.281 kb on - strandat 4035.281 kb on - strandat 4035.281 kb on - strandat 4035.349 kb on - strand, within yfcJat 4035.349 kb on - strand, within yfcJat 4035.406 kb on + strand, within yfcJat 4035.406 kb on + strand, within yfcJat 4035.430 kb on + strand, within yfcJat 4035.464 kb on + strand, within yfcJat 4035.465 kb on - strand, within yfcJat 4035.465 kb on - strand, within yfcJat 4035.465 kb on - strand, within yfcJat 4035.620 kb on + strand, within yfcJat 4035.620 kb on + strand, within yfcJat 4035.670 kb on + strand, within yfcJat 4035.758 kb on + strand, within yfcJat 4035.800 kb on + strand, within yfcJat 4035.801 kb on - strand, within yfcJat 4035.801 kb on - strand, within yfcJat 4035.801 kb on - strand, within yfcJat 4035.849 kb on + strand, within yfcJat 4035.867 kb on - strand, within yfcJat 4035.878 kb on + strand, within yfcJat 4035.879 kb on - strand, within yfcJ

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,032,775 - mnmC NIAGMN_20415 0.62 +0.1
4,032,803 - mnmC NIAGMN_20415 0.63 +0.6
4,032,803 - mnmC NIAGMN_20415 0.63 -0.1
4,032,915 + mnmC NIAGMN_20415 0.69 -1.1
4,032,916 - mnmC NIAGMN_20415 0.69 +1.2
4,032,916 - mnmC NIAGMN_20415 0.69 +0.2
4,032,916 - mnmC NIAGMN_20415 0.69 -1.2
4,033,030 + mnmC NIAGMN_20415 0.74 -0.5
4,033,031 - mnmC NIAGMN_20415 0.74 -3.2
4,033,075 - mnmC NIAGMN_20415 0.77 -0.4
4,033,121 - mnmC NIAGMN_20415 0.79 -0.0
4,033,124 - mnmC NIAGMN_20415 0.79 -0.3
4,033,124 - mnmC NIAGMN_20415 0.79 +0.8
4,033,270 + mnmC NIAGMN_20415 0.86 +0.2
4,033,333 + mnmC NIAGMN_20415 0.89 +0.1
4,033,361 - +0.6
4,033,428 - +0.3
4,033,494 + -0.2
4,033,506 + -1.9
4,033,507 - +0.6
4,033,528 + -0.3
4,033,528 + -2.8
4,033,547 + +1.7
4,033,552 + -0.6
4,033,571 - +0.5
4,033,616 + +0.6
4,033,674 + -1.0
4,033,674 + -1.0
4,033,674 + -0.2
4,034,943 - -1.5
4,035,209 + -3.6
4,035,210 - +2.1
4,035,280 + +0.4
4,035,281 - +1.0
4,035,281 - -2.2
4,035,281 - +0.8
4,035,281 - +0.1
4,035,281 - +0.8
4,035,281 - -0.6
4,035,349 - yfcJ NIAGMN_20425 0.13 -1.4
4,035,349 - yfcJ NIAGMN_20425 0.13 +0.4
4,035,406 + yfcJ NIAGMN_20425 0.18 -1.2
4,035,406 + yfcJ NIAGMN_20425 0.18 -2.0
4,035,430 + yfcJ NIAGMN_20425 0.20 -0.2
4,035,464 + yfcJ NIAGMN_20425 0.22 +0.4
4,035,465 - yfcJ NIAGMN_20425 0.23 -0.4
4,035,465 - yfcJ NIAGMN_20425 0.23 -0.2
4,035,465 - yfcJ NIAGMN_20425 0.23 +0.7
4,035,620 + yfcJ NIAGMN_20425 0.36 -1.8
4,035,620 + yfcJ NIAGMN_20425 0.36 -2.2
4,035,670 + yfcJ NIAGMN_20425 0.40 +0.2
4,035,758 + yfcJ NIAGMN_20425 0.47 -0.1
4,035,800 + yfcJ NIAGMN_20425 0.51 -1.6
4,035,801 - yfcJ NIAGMN_20425 0.51 -1.7
4,035,801 - yfcJ NIAGMN_20425 0.51 +1.2
4,035,801 - yfcJ NIAGMN_20425 0.51 -1.2
4,035,849 + yfcJ NIAGMN_20425 0.55 -0.1
4,035,867 - yfcJ NIAGMN_20425 0.57 +0.9
4,035,878 + yfcJ NIAGMN_20425 0.58 +0.8
4,035,879 - yfcJ NIAGMN_20425 0.58 -2.6

Or see this region's nucleotide sequence