Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroC and mepA are separated by 3 nucleotides mepA and yfcA overlap by 1 nucleotides yfcA and epmC overlap by 1 nucleotides epmC and yfcL are separated by 33 nucleotides yfcL and mnmC are separated by 120 nucleotides
NIAGMN_20390: aroC - chorismate synthase, at 4,027,836 to 4,028,921
aroC
NIAGMN_20395: mepA - penicillin-insensitive murein endopeptidase, at 4,028,925 to 4,029,749
mepA
NIAGMN_20400: yfcA - putative membrane transporter protein YfcA, at 4,029,749 to 4,030,558
yfcA
NIAGMN_20405: epmC - elongation factor P hydroxylase, at 4,030,558 to 4,031,106
epmC
NIAGMN_20410: yfcL - Uncharacterized protein YfcL, at 4,031,140 to 4,031,418
yfcL
NIAGMN_20415: mnmC - bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC, at 4,031,539 to 4,033,545
mnmC
Position (kb) 4029
4030
4031 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4029.056 kb on + strand, within mepA at 4029.056 kb on + strand, within mepA at 4029.057 kb on - strand, within mepA at 4029.170 kb on + strand, within mepA at 4029.352 kb on + strand, within mepA at 4029.352 kb on + strand, within mepA at 4029.552 kb on - strand, within mepA at 4029.552 kb on - strand, within mepA at 4029.559 kb on + strand, within mepA at 4029.747 kb on + strand at 4029.748 kb on - strand at 4029.761 kb on - strand at 4029.773 kb on - strand at 4029.829 kb on + strand at 4029.944 kb on - strand, within yfcA at 4029.956 kb on - strand, within yfcA at 4029.956 kb on - strand, within yfcA at 4029.956 kb on - strand, within yfcA at 4029.959 kb on + strand, within yfcA at 4029.959 kb on + strand, within yfcA at 4029.959 kb on + strand, within yfcA at 4029.960 kb on - strand, within yfcA at 4029.960 kb on - strand, within yfcA at 4029.960 kb on - strand, within yfcA at 4029.983 kb on - strand, within yfcA at 4029.987 kb on + strand, within yfcA at 4030.003 kb on + strand, within yfcA at 4030.050 kb on + strand, within yfcA at 4030.055 kb on + strand, within yfcA at 4030.055 kb on + strand, within yfcA at 4030.106 kb on - strand, within yfcA at 4030.115 kb on + strand, within yfcA at 4030.342 kb on - strand, within yfcA at 4030.352 kb on - strand, within yfcA at 4030.511 kb on + strand at 4030.511 kb on + strand at 4030.512 kb on - strand at 4030.556 kb on + strand at 4030.567 kb on - strand at 4030.602 kb on + strand at 4030.660 kb on + strand, within epmC at 4030.660 kb on + strand, within epmC at 4030.660 kb on + strand, within epmC at 4030.660 kb on + strand, within epmC at 4030.661 kb on - strand, within epmC at 4030.661 kb on - strand, within epmC at 4030.661 kb on - strand, within epmC at 4030.682 kb on + strand, within epmC at 4030.682 kb on + strand, within epmC at 4030.683 kb on - strand, within epmC at 4030.687 kb on + strand, within epmC at 4030.717 kb on + strand, within epmC at 4030.752 kb on + strand, within epmC at 4030.905 kb on + strand, within epmC at 4030.906 kb on - strand, within epmC at 4030.970 kb on + strand, within epmC at 4030.971 kb on - strand, within epmC at 4030.990 kb on + strand, within epmC at 4030.995 kb on - strand, within epmC at 4031.050 kb on + strand, within epmC at 4031.123 kb on + strand at 4031.123 kb on + strand at 4031.124 kb on - strand at 4031.244 kb on + strand, within yfcL at 4031.244 kb on + strand, within yfcL at 4031.244 kb on + strand, within yfcL at 4031.244 kb on + strand, within yfcL at 4031.245 kb on - strand, within yfcL at 4031.245 kb on - strand, within yfcL at 4031.245 kb on - strand, within yfcL at 4031.245 kb on - strand, within yfcL at 4031.249 kb on + strand, within yfcL at 4031.301 kb on + strand, within yfcL at 4031.301 kb on + strand, within yfcL at 4031.301 kb on + strand, within yfcL at 4031.302 kb on - strand, within yfcL at 4031.302 kb on - strand, within yfcL at 4031.302 kb on - strand, within yfcL at 4031.380 kb on - strand, within yfcL at 4031.466 kb on + strand at 4031.466 kb on + strand at 4031.489 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,029,056 + mepA NIAGMN_20395 0.16 +0.9 4,029,056 + mepA NIAGMN_20395 0.16 +0.9 4,029,057 - mepA NIAGMN_20395 0.16 +0.2 4,029,170 + mepA NIAGMN_20395 0.30 -0.2 4,029,352 + mepA NIAGMN_20395 0.52 -0.9 4,029,352 + mepA NIAGMN_20395 0.52 -3.2 4,029,552 - mepA NIAGMN_20395 0.76 -0.6 4,029,552 - mepA NIAGMN_20395 0.76 +0.6 4,029,559 + mepA NIAGMN_20395 0.77 +0.4 4,029,747 + +0.3 4,029,748 - -0.2 4,029,761 - -2.1 4,029,773 - +0.0 4,029,829 + -0.7 4,029,944 - yfcA NIAGMN_20400 0.24 +1.1 4,029,956 - yfcA NIAGMN_20400 0.26 +0.8 4,029,956 - yfcA NIAGMN_20400 0.26 +0.3 4,029,956 - yfcA NIAGMN_20400 0.26 -1.0 4,029,959 + yfcA NIAGMN_20400 0.26 -0.0 4,029,959 + yfcA NIAGMN_20400 0.26 -0.4 4,029,959 + yfcA NIAGMN_20400 0.26 -0.5 4,029,960 - yfcA NIAGMN_20400 0.26 -1.5 4,029,960 - yfcA NIAGMN_20400 0.26 -1.3 4,029,960 - yfcA NIAGMN_20400 0.26 -0.4 4,029,983 - yfcA NIAGMN_20400 0.29 -0.4 4,029,987 + yfcA NIAGMN_20400 0.29 +2.3 4,030,003 + yfcA NIAGMN_20400 0.31 +3.0 4,030,050 + yfcA NIAGMN_20400 0.37 -0.6 4,030,055 + yfcA NIAGMN_20400 0.38 +0.7 4,030,055 + yfcA NIAGMN_20400 0.38 +0.1 4,030,106 - yfcA NIAGMN_20400 0.44 +1.2 4,030,115 + yfcA NIAGMN_20400 0.45 -1.3 4,030,342 - yfcA NIAGMN_20400 0.73 +1.2 4,030,352 - yfcA NIAGMN_20400 0.74 +1.0 4,030,511 + -0.2 4,030,511 + -0.7 4,030,512 - -3.5 4,030,556 + +0.2 4,030,567 - -1.4 4,030,602 + -3.6 4,030,660 + epmC NIAGMN_20405 0.19 +0.3 4,030,660 + epmC NIAGMN_20405 0.19 -0.3 4,030,660 + epmC NIAGMN_20405 0.19 -2.2 4,030,660 + epmC NIAGMN_20405 0.19 -1.8 4,030,661 - epmC NIAGMN_20405 0.19 +1.1 4,030,661 - epmC NIAGMN_20405 0.19 +2.5 4,030,661 - epmC NIAGMN_20405 0.19 -1.1 4,030,682 + epmC NIAGMN_20405 0.23 -0.9 4,030,682 + epmC NIAGMN_20405 0.23 -1.4 4,030,683 - epmC NIAGMN_20405 0.23 +0.2 4,030,687 + epmC NIAGMN_20405 0.23 +0.9 4,030,717 + epmC NIAGMN_20405 0.29 +0.3 4,030,752 + epmC NIAGMN_20405 0.35 +1.4 4,030,905 + epmC NIAGMN_20405 0.63 -2.3 4,030,906 - epmC NIAGMN_20405 0.63 +0.6 4,030,970 + epmC NIAGMN_20405 0.75 +0.4 4,030,971 - epmC NIAGMN_20405 0.75 -0.6 4,030,990 + epmC NIAGMN_20405 0.79 -2.1 4,030,995 - epmC NIAGMN_20405 0.80 -2.0 4,031,050 + epmC NIAGMN_20405 0.90 +0.1 4,031,123 + +0.8 4,031,123 + +0.5 4,031,124 - +1.1 4,031,244 + yfcL NIAGMN_20410 0.37 -1.2 4,031,244 + yfcL NIAGMN_20410 0.37 -0.4 4,031,244 + yfcL NIAGMN_20410 0.37 -0.4 4,031,244 + yfcL NIAGMN_20410 0.37 +0.7 4,031,245 - yfcL NIAGMN_20410 0.38 +1.6 4,031,245 - yfcL NIAGMN_20410 0.38 -0.3 4,031,245 - yfcL NIAGMN_20410 0.38 -0.8 4,031,245 - yfcL NIAGMN_20410 0.38 -0.5 4,031,249 + yfcL NIAGMN_20410 0.39 +2.2 4,031,301 + yfcL NIAGMN_20410 0.58 -0.5 4,031,301 + yfcL NIAGMN_20410 0.58 +1.6 4,031,301 + yfcL NIAGMN_20410 0.58 -0.6 4,031,302 - yfcL NIAGMN_20410 0.58 -1.6 4,031,302 - yfcL NIAGMN_20410 0.58 -2.4 4,031,302 - yfcL NIAGMN_20410 0.58 +2.6 4,031,380 - yfcL NIAGMN_20410 0.86 +0.4 4,031,466 + +0.2 4,031,466 + -2.2 4,031,489 - +0.8
Or see this region's nucleotide sequence