Strain Fitness in Escherichia coli ECRC102 around NIAGMN_18920

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrecN and nadK are separated by 85 nucleotidesnadK and grpE are separated by 122 nucleotidesgrpE and yfjD are separated by 54 nucleotides NIAGMN_18915: recN - DNA repair protein RecN, at 3,728,208 to 3,729,869 recN NIAGMN_18920: nadK - NAD(+) kinase, at 3,729,955 to 3,730,833 nadK NIAGMN_18925: grpE - nucleotide exchange factor GrpE, at 3,730,956 to 3,731,549 grpE NIAGMN_18930: yfjD - UPF0053 inner membrane protein YfjD, at 3,731,604 to 3,732,845 yfjD Position (kb) 3729 3730 3731Strain fitness (log2 ratio) -3 -2 -1 0 1at 3729.051 kb on - strand, within recNat 3729.066 kb on - strand, within recNat 3729.172 kb on - strand, within recNat 3729.230 kb on - strand, within recNat 3729.289 kb on - strand, within recNat 3729.296 kb on - strand, within recNat 3729.333 kb on + strand, within recNat 3729.334 kb on - strand, within recNat 3729.382 kb on + strand, within recNat 3729.382 kb on + strand, within recNat 3729.465 kb on + strand, within recNat 3729.466 kb on - strand, within recNat 3729.754 kb on - strandat 3729.754 kb on - strandat 3729.754 kb on - strandat 3729.754 kb on - strandat 3729.754 kb on - strandat 3729.754 kb on - strandat 3729.790 kb on - strandat 3729.790 kb on - strandat 3729.869 kb on + strandat 3729.869 kb on + strandat 3729.870 kb on - strandat 3729.870 kb on - strandat 3729.870 kb on - strandat 3729.928 kb on - strandat 3730.907 kb on + strandat 3730.910 kb on + strandat 3730.920 kb on + strandat 3731.530 kb on + strandat 3731.565 kb on + strandat 3731.658 kb on - strandat 3731.658 kb on - strandat 3731.663 kb on + strandat 3731.663 kb on + strandat 3731.663 kb on + strandat 3731.663 kb on + strandat 3731.664 kb on - strandat 3731.664 kb on - strandat 3731.664 kb on - strandat 3731.674 kb on - strandat 3731.674 kb on - strandat 3731.674 kb on - strandat 3731.695 kb on + strandat 3731.722 kb on - strandat 3731.722 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,729,051 - recN NIAGMN_18915 0.51 +1.5
3,729,066 - recN NIAGMN_18915 0.52 -1.1
3,729,172 - recN NIAGMN_18915 0.58 +0.7
3,729,230 - recN NIAGMN_18915 0.61 -1.0
3,729,289 - recN NIAGMN_18915 0.65 +1.7
3,729,296 - recN NIAGMN_18915 0.65 -0.3
3,729,333 + recN NIAGMN_18915 0.68 -0.3
3,729,334 - recN NIAGMN_18915 0.68 -0.8
3,729,382 + recN NIAGMN_18915 0.71 -1.1
3,729,382 + recN NIAGMN_18915 0.71 -0.3
3,729,465 + recN NIAGMN_18915 0.76 -0.1
3,729,466 - recN NIAGMN_18915 0.76 -0.1
3,729,754 - -3.0
3,729,754 - -0.1
3,729,754 - -1.6
3,729,754 - -1.0
3,729,754 - -1.6
3,729,754 - +0.4
3,729,790 - -1.7
3,729,790 - +1.6
3,729,869 + +0.7
3,729,869 + -1.4
3,729,870 - +0.3
3,729,870 - +0.4
3,729,870 - +0.2
3,729,928 - +0.8
3,730,907 + -0.4
3,730,910 + +0.1
3,730,920 + +0.2
3,731,530 + -0.9
3,731,565 + -2.2
3,731,658 - +0.4
3,731,658 - +0.7
3,731,663 + -0.2
3,731,663 + -0.2
3,731,663 + -1.8
3,731,663 + +1.6
3,731,664 - -3.3
3,731,664 - -0.7
3,731,664 - -0.2
3,731,674 - -1.3
3,731,674 - -0.8
3,731,674 - +0.1
3,731,695 + -0.6
3,731,722 - +0.1
3,731,722 - +0.8

Or see this region's nucleotide sequence