Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt recN and nadK are separated by 85 nucleotides nadK and grpE are separated by 122 nucleotides grpE and yfjD are separated by 54 nucleotides
NIAGMN_18915: recN - DNA repair protein RecN, at 3,728,208 to 3,729,869
recN
NIAGMN_18920: nadK - NAD(+) kinase, at 3,729,955 to 3,730,833
nadK
NIAGMN_18925: grpE - nucleotide exchange factor GrpE, at 3,730,956 to 3,731,549
grpE
NIAGMN_18930: yfjD - UPF0053 inner membrane protein YfjD, at 3,731,604 to 3,732,845
yfjD
Position (kb)
3729
3730
3731 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3729.051 kb on - strand, within recN at 3729.066 kb on - strand, within recN at 3729.172 kb on - strand, within recN at 3729.230 kb on - strand, within recN at 3729.289 kb on - strand, within recN at 3729.296 kb on - strand, within recN at 3729.333 kb on + strand, within recN at 3729.334 kb on - strand, within recN at 3729.382 kb on + strand, within recN at 3729.382 kb on + strand, within recN at 3729.465 kb on + strand, within recN at 3729.466 kb on - strand, within recN at 3729.754 kb on - strand at 3729.754 kb on - strand at 3729.754 kb on - strand at 3729.754 kb on - strand at 3729.754 kb on - strand at 3729.754 kb on - strand at 3729.790 kb on - strand at 3729.790 kb on - strand at 3729.869 kb on + strand at 3729.869 kb on + strand at 3729.870 kb on - strand at 3729.870 kb on - strand at 3729.870 kb on - strand at 3729.928 kb on - strand at 3730.907 kb on + strand at 3730.910 kb on + strand at 3730.920 kb on + strand at 3731.530 kb on + strand at 3731.565 kb on + strand at 3731.658 kb on - strand at 3731.658 kb on - strand at 3731.663 kb on + strand at 3731.663 kb on + strand at 3731.663 kb on + strand at 3731.663 kb on + strand at 3731.664 kb on - strand at 3731.664 kb on - strand at 3731.664 kb on - strand at 3731.674 kb on - strand at 3731.674 kb on - strand at 3731.674 kb on - strand at 3731.695 kb on + strand at 3731.722 kb on - strand at 3731.722 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 3,729,051 - recN NIAGMN_18915 0.51 +1.5 3,729,066 - recN NIAGMN_18915 0.52 -1.1 3,729,172 - recN NIAGMN_18915 0.58 +0.7 3,729,230 - recN NIAGMN_18915 0.61 -1.0 3,729,289 - recN NIAGMN_18915 0.65 +1.7 3,729,296 - recN NIAGMN_18915 0.65 -0.3 3,729,333 + recN NIAGMN_18915 0.68 -0.3 3,729,334 - recN NIAGMN_18915 0.68 -0.8 3,729,382 + recN NIAGMN_18915 0.71 -1.1 3,729,382 + recN NIAGMN_18915 0.71 -0.3 3,729,465 + recN NIAGMN_18915 0.76 -0.1 3,729,466 - recN NIAGMN_18915 0.76 -0.1 3,729,754 - -3.0 3,729,754 - -0.1 3,729,754 - -1.6 3,729,754 - -1.0 3,729,754 - -1.6 3,729,754 - +0.4 3,729,790 - -1.7 3,729,790 - +1.6 3,729,869 + +0.7 3,729,869 + -1.4 3,729,870 - +0.3 3,729,870 - +0.4 3,729,870 - +0.2 3,729,928 - +0.8 3,730,907 + -0.4 3,730,910 + +0.1 3,730,920 + +0.2 3,731,530 + -0.9 3,731,565 + -2.2 3,731,658 - +0.4 3,731,658 - +0.7 3,731,663 + -0.2 3,731,663 + -0.2 3,731,663 + -1.8 3,731,663 + +1.6 3,731,664 - -3.3 3,731,664 - -0.7 3,731,664 - -0.2 3,731,674 - -1.3 3,731,674 - -0.8 3,731,674 - +0.1 3,731,695 + -0.6 3,731,722 - +0.1 3,731,722 - +0.8
Or see this region's nucleotide sequence