Strain Fitness in Escherichia coli ECRC102 around NIAGMN_18730

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_18720 and alpA are separated by 99 nucleotidesalpA and xerD are separated by 322 nucleotidesxerD and NIAGMN_18735 are separated by 1 nucleotides NIAGMN_18720: NIAGMN_18720 - DUF6387 domain-containing protein, at 3,701,776 to 3,702,627 _18720 NIAGMN_18725: alpA - dipicolinate synthase, at 3,702,727 to 3,702,933 alpA NIAGMN_18730: xerD - site-specific integrase, at 3,703,256 to 3,704,461 xerD NIAGMN_18735: NIAGMN_18735 - integrase, at 3,704,463 to 3,705,569 _18735 Position (kb) 3703 3704 3705Strain fitness (log2 ratio) -2 -1 0 1 2at 3702.293 kb on + strand, within NIAGMN_18720at 3702.306 kb on - strand, within NIAGMN_18720at 3702.398 kb on + strand, within NIAGMN_18720at 3702.403 kb on - strand, within NIAGMN_18720at 3702.403 kb on - strand, within NIAGMN_18720at 3702.403 kb on - strand, within NIAGMN_18720at 3702.407 kb on + strand, within NIAGMN_18720at 3702.412 kb on - strand, within NIAGMN_18720at 3702.412 kb on - strand, within NIAGMN_18720at 3702.413 kb on + strand, within NIAGMN_18720at 3702.443 kb on - strand, within NIAGMN_18720at 3702.444 kb on + strand, within NIAGMN_18720at 3702.496 kb on - strand, within NIAGMN_18720at 3702.530 kb on + strand, within NIAGMN_18720at 3702.531 kb on - strand, within NIAGMN_18720at 3702.641 kb on + strandat 3702.689 kb on - strandat 3702.689 kb on - strandat 3702.727 kb on - strandat 3703.208 kb on - strandat 3704.228 kb on + strand, within xerDat 3704.361 kb on + strandat 3704.381 kb on + strandat 3705.254 kb on + strand, within NIAGMN_18735

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,702,293 + NIAGMN_18720 0.61 -1.3
3,702,306 - NIAGMN_18720 0.62 -1.8
3,702,398 + NIAGMN_18720 0.73 +0.7
3,702,403 - NIAGMN_18720 0.74 +0.6
3,702,403 - NIAGMN_18720 0.74 -0.6
3,702,403 - NIAGMN_18720 0.74 -1.2
3,702,407 + NIAGMN_18720 0.74 -1.3
3,702,412 - NIAGMN_18720 0.75 +1.7
3,702,412 - NIAGMN_18720 0.75 +1.6
3,702,413 + NIAGMN_18720 0.75 +2.2
3,702,443 - NIAGMN_18720 0.78 +1.4
3,702,444 + NIAGMN_18720 0.78 -1.5
3,702,496 - NIAGMN_18720 0.85 -2.0
3,702,530 + NIAGMN_18720 0.88 -0.9
3,702,531 - NIAGMN_18720 0.89 -2.3
3,702,641 + +0.9
3,702,689 - +0.1
3,702,689 - -0.0
3,702,727 - +0.8
3,703,208 - -1.7
3,704,228 + xerD NIAGMN_18730 0.81 -0.6
3,704,361 + +2.2
3,704,381 + -0.5
3,705,254 + NIAGMN_18735 0.71 -0.5

Or see this region's nucleotide sequence