Strain Fitness in Escherichia coli ECRC102 around NIAGMN_18515

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcsrA and Ser_trna are separated by 315 nucleotidesSer_trna and Arg_trna are separated by 3 nucleotidesArg_trna and Arg_trna are separated by 64 nucleotidesArg_trna and Arg_trna are separated by 62 nucleotidesArg_trna and Arg_trna are separated by 102 nucleotidesArg_trna and yqaB are separated by 280 nucleotidesyqaB and yqaA overlap by 4 nucleotides NIAGMN_18490: csrA - carbon storage regulator CsrA, at 3,658,599 to 3,658,784 csrA NIAGMN_18495: Ser_trna - tRNA-Ser(gct), at 3,659,100 to 3,659,192 _trna NIAGMN_18500: Arg_trna - tRNA-Arg(acg), at 3,659,196 to 3,659,272 _trna NIAGMN_18505: Arg_trna - tRNA-Arg(acg), at 3,659,337 to 3,659,413 _trna NIAGMN_18510: Arg_trna - tRNA-Arg(acg), at 3,659,476 to 3,659,552 _trna NIAGMN_18515: Arg_trna - tRNA-Arg(acg), at 3,659,655 to 3,659,731 _trna NIAGMN_18520: yqaB - fructose-1-phosphate/6-phosphogluconate phosphatase, at 3,660,012 to 3,660,578 yqaB NIAGMN_18525: yqaA - Inner membrane protein YqaA, at 3,660,575 to 3,661,003 yqaA Position (kb) 3659 3660Strain fitness (log2 ratio) -3 -2 -1 0 1at 3658.779 kb on + strandat 3658.779 kb on + strandat 3658.843 kb on - strandat 3658.845 kb on - strandat 3658.859 kb on - strandat 3658.877 kb on + strandat 3658.878 kb on - strandat 3658.899 kb on - strandat 3658.933 kb on + strandat 3658.933 kb on + strandat 3658.934 kb on - strandat 3658.934 kb on - strandat 3659.278 kb on + strandat 3659.285 kb on + strandat 3659.419 kb on + strandat 3659.419 kb on + strandat 3659.426 kb on + strandat 3659.434 kb on + strandat 3659.434 kb on + strandat 3659.553 kb on + strandat 3659.553 kb on + strandat 3659.562 kb on + strandat 3659.582 kb on + strandat 3659.612 kb on + strandat 3659.636 kb on + strandat 3659.732 kb on + strandat 3659.813 kb on + strandat 3659.970 kb on + strandat 3660.024 kb on + strandat 3660.024 kb on + strandat 3660.065 kb on + strandat 3660.111 kb on + strand, within yqaBat 3660.124 kb on - strand, within yqaBat 3660.185 kb on + strand, within yqaBat 3660.254 kb on + strand, within yqaBat 3660.254 kb on + strand, within yqaBat 3660.266 kb on + strand, within yqaBat 3660.385 kb on + strand, within yqaBat 3660.386 kb on - strand, within yqaBat 3660.435 kb on - strand, within yqaBat 3660.473 kb on + strand, within yqaBat 3660.633 kb on + strand, within yqaAat 3660.633 kb on + strand, within yqaAat 3660.634 kb on - strand, within yqaAat 3660.724 kb on + strand, within yqaAat 3660.727 kb on + strand, within yqaAat 3660.728 kb on - strand, within yqaA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,658,779 + +0.8
3,658,779 + -2.8
3,658,843 - +0.2
3,658,845 - +0.1
3,658,859 - +0.9
3,658,877 + +0.3
3,658,878 - +0.1
3,658,899 - +0.0
3,658,933 + +0.0
3,658,933 + -2.9
3,658,934 - +1.5
3,658,934 - -1.1
3,659,278 + +1.4
3,659,285 + -0.2
3,659,419 + +0.3
3,659,419 + +0.0
3,659,426 + -1.9
3,659,434 + +0.2
3,659,434 + -0.5
3,659,553 + +0.3
3,659,553 + +0.7
3,659,562 + -1.5
3,659,582 + -0.1
3,659,612 + -0.4
3,659,636 + -0.5
3,659,732 + +0.0
3,659,813 + -0.2
3,659,970 + +0.3
3,660,024 + -3.1
3,660,024 + -0.1
3,660,065 + +1.2
3,660,111 + yqaB NIAGMN_18520 0.17 -0.4
3,660,124 - yqaB NIAGMN_18520 0.20 +0.1
3,660,185 + yqaB NIAGMN_18520 0.31 -1.6
3,660,254 + yqaB NIAGMN_18520 0.43 -0.4
3,660,254 + yqaB NIAGMN_18520 0.43 -1.0
3,660,266 + yqaB NIAGMN_18520 0.45 -0.4
3,660,385 + yqaB NIAGMN_18520 0.66 -0.1
3,660,386 - yqaB NIAGMN_18520 0.66 +0.2
3,660,435 - yqaB NIAGMN_18520 0.75 -0.0
3,660,473 + yqaB NIAGMN_18520 0.81 -0.3
3,660,633 + yqaA NIAGMN_18525 0.14 -1.3
3,660,633 + yqaA NIAGMN_18525 0.14 +0.6
3,660,634 - yqaA NIAGMN_18525 0.14 -0.2
3,660,724 + yqaA NIAGMN_18525 0.35 +1.4
3,660,727 + yqaA NIAGMN_18525 0.35 +0.3
3,660,728 - yqaA NIAGMN_18525 0.36 +0.1

Or see this region's nucleotide sequence