Strain Fitness in Escherichia coli ECRC102 around NIAGMN_18175

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcasA and casB overlap by 4 nucleotidescasB and cas7e are separated by 11 nucleotides NIAGMN_18170: casA - type I-E CRISPR-associated protein Cse1/CasA, at 3,597,376 to 3,598,938 casA NIAGMN_18175: casB - type I-E CRISPR-associated protein Cse2/CasB, at 3,598,935 to 3,599,471 casB NIAGMN_18180: cas7e - type I-E CRISPR-associated protein Cas7/Cse4/CasC, at 3,599,483 to 3,600,538 cas7e Position (kb) 3598 3599 3600Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3598.060 kb on - strand, within casAat 3598.143 kb on + strand, within casAat 3598.152 kb on + strand, within casAat 3598.153 kb on - strand, within casAat 3598.179 kb on + strand, within casAat 3598.231 kb on + strand, within casAat 3598.243 kb on + strand, within casAat 3598.243 kb on + strand, within casAat 3598.243 kb on + strand, within casAat 3598.281 kb on - strand, within casAat 3598.287 kb on + strand, within casAat 3598.334 kb on + strand, within casAat 3598.335 kb on - strand, within casAat 3598.372 kb on - strand, within casAat 3598.468 kb on + strand, within casAat 3598.710 kb on - strand, within casAat 3598.748 kb on + strand, within casAat 3598.749 kb on - strand, within casAat 3598.808 kb on + strandat 3598.809 kb on - strandat 3598.822 kb on + strandat 3598.822 kb on + strandat 3598.872 kb on + strandat 3599.028 kb on - strand, within casBat 3599.030 kb on + strand, within casBat 3599.092 kb on + strand, within casBat 3599.092 kb on + strand, within casBat 3599.120 kb on + strand, within casBat 3599.120 kb on + strand, within casBat 3599.293 kb on + strand, within casBat 3599.293 kb on + strand, within casBat 3599.294 kb on - strand, within casBat 3599.406 kb on - strand, within casBat 3599.430 kb on + strandat 3599.434 kb on - strandat 3599.478 kb on - strandat 3599.494 kb on + strandat 3599.495 kb on - strandat 3599.666 kb on - strand, within cas7eat 3599.686 kb on + strand, within cas7eat 3599.707 kb on + strand, within cas7eat 3599.838 kb on + strand, within cas7eat 3599.838 kb on + strand, within cas7eat 3599.871 kb on + strand, within cas7eat 3599.958 kb on + strand, within cas7eat 3599.958 kb on + strand, within cas7eat 3599.958 kb on + strand, within cas7eat 3599.958 kb on + strand, within cas7eat 3599.959 kb on - strand, within cas7eat 3599.968 kb on + strand, within cas7eat 3599.969 kb on - strand, within cas7eat 3599.980 kb on + strand, within cas7eat 3599.980 kb on + strand, within cas7eat 3599.981 kb on - strand, within cas7eat 3599.981 kb on - strand, within cas7eat 3600.162 kb on - strand, within cas7eat 3600.162 kb on - strand, within cas7eat 3600.162 kb on - strand, within cas7eat 3600.167 kb on + strand, within cas7eat 3600.167 kb on + strand, within cas7eat 3600.167 kb on + strand, within cas7eat 3600.167 kb on + strand, within cas7eat 3600.167 kb on + strand, within cas7eat 3600.168 kb on - strand, within cas7eat 3600.168 kb on - strand, within cas7eat 3600.168 kb on - strand, within cas7eat 3600.168 kb on - strand, within cas7eat 3600.169 kb on + strand, within cas7eat 3600.169 kb on + strand, within cas7eat 3600.169 kb on + strand, within cas7eat 3600.170 kb on - strand, within cas7eat 3600.170 kb on - strand, within cas7eat 3600.222 kb on + strand, within cas7eat 3600.226 kb on + strand, within cas7eat 3600.227 kb on - strand, within cas7eat 3600.227 kb on - strand, within cas7eat 3600.247 kb on + strand, within cas7eat 3600.262 kb on + strand, within cas7eat 3600.262 kb on + strand, within cas7eat 3600.308 kb on + strand, within cas7eat 3600.371 kb on + strand, within cas7eat 3600.399 kb on + strand, within cas7eat 3600.399 kb on + strand, within cas7eat 3600.399 kb on + strand, within cas7eat 3600.399 kb on + strand, within cas7eat 3600.400 kb on - strand, within cas7eat 3600.400 kb on - strand, within cas7eat 3600.400 kb on - strand, within cas7eat 3600.400 kb on - strand, within cas7eat 3600.418 kb on + strand, within cas7eat 3600.418 kb on + strand, within cas7eat 3600.419 kb on - strand, within cas7eat 3600.421 kb on + strand, within cas7eat 3600.422 kb on - strand, within cas7eat 3600.422 kb on - strand, within cas7eat 3600.422 kb on - strand, within cas7eat 3600.422 kb on - strand, within cas7eat 3600.422 kb on - strand, within cas7eat 3600.445 kb on + strandat 3600.445 kb on + strandat 3600.445 kb on + strandat 3600.446 kb on - strandat 3600.452 kb on + strandat 3600.452 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,598,060 - casA NIAGMN_18170 0.44 +0.3
3,598,143 + casA NIAGMN_18170 0.49 +0.4
3,598,152 + casA NIAGMN_18170 0.50 +0.5
3,598,153 - casA NIAGMN_18170 0.50 +1.1
3,598,179 + casA NIAGMN_18170 0.51 -0.2
3,598,231 + casA NIAGMN_18170 0.55 -0.4
3,598,243 + casA NIAGMN_18170 0.55 +0.9
3,598,243 + casA NIAGMN_18170 0.55 -2.3
3,598,243 + casA NIAGMN_18170 0.55 +0.4
3,598,281 - casA NIAGMN_18170 0.58 +0.4
3,598,287 + casA NIAGMN_18170 0.58 -0.6
3,598,334 + casA NIAGMN_18170 0.61 +0.4
3,598,335 - casA NIAGMN_18170 0.61 +0.1
3,598,372 - casA NIAGMN_18170 0.64 -0.5
3,598,468 + casA NIAGMN_18170 0.70 +0.3
3,598,710 - casA NIAGMN_18170 0.85 +1.2
3,598,748 + casA NIAGMN_18170 0.88 -1.2
3,598,749 - casA NIAGMN_18170 0.88 +0.6
3,598,808 + +2.2
3,598,809 - +1.7
3,598,822 + +0.4
3,598,822 + -0.6
3,598,872 + +0.4
3,599,028 - casB NIAGMN_18175 0.17 +0.4
3,599,030 + casB NIAGMN_18175 0.18 -0.4
3,599,092 + casB NIAGMN_18175 0.29 -2.3
3,599,092 + casB NIAGMN_18175 0.29 +0.2
3,599,120 + casB NIAGMN_18175 0.34 +0.5
3,599,120 + casB NIAGMN_18175 0.34 -1.4
3,599,293 + casB NIAGMN_18175 0.67 +0.4
3,599,293 + casB NIAGMN_18175 0.67 -0.7
3,599,294 - casB NIAGMN_18175 0.67 +0.6
3,599,406 - casB NIAGMN_18175 0.88 +1.9
3,599,430 + -0.0
3,599,434 - -0.1
3,599,478 - +1.9
3,599,494 + +0.2
3,599,495 - -0.5
3,599,666 - cas7e NIAGMN_18180 0.17 +0.6
3,599,686 + cas7e NIAGMN_18180 0.19 +1.0
3,599,707 + cas7e NIAGMN_18180 0.21 +1.8
3,599,838 + cas7e NIAGMN_18180 0.34 +0.2
3,599,838 + cas7e NIAGMN_18180 0.34 +0.3
3,599,871 + cas7e NIAGMN_18180 0.37 +0.9
3,599,958 + cas7e NIAGMN_18180 0.45 -1.2
3,599,958 + cas7e NIAGMN_18180 0.45 -1.1
3,599,958 + cas7e NIAGMN_18180 0.45 -0.8
3,599,958 + cas7e NIAGMN_18180 0.45 +0.5
3,599,959 - cas7e NIAGMN_18180 0.45 -0.7
3,599,968 + cas7e NIAGMN_18180 0.46 +0.5
3,599,969 - cas7e NIAGMN_18180 0.46 +0.2
3,599,980 + cas7e NIAGMN_18180 0.47 -1.4
3,599,980 + cas7e NIAGMN_18180 0.47 -1.2
3,599,981 - cas7e NIAGMN_18180 0.47 +0.2
3,599,981 - cas7e NIAGMN_18180 0.47 +0.3
3,600,162 - cas7e NIAGMN_18180 0.64 +2.6
3,600,162 - cas7e NIAGMN_18180 0.64 +0.1
3,600,162 - cas7e NIAGMN_18180 0.64 -0.4
3,600,167 + cas7e NIAGMN_18180 0.65 +1.0
3,600,167 + cas7e NIAGMN_18180 0.65 -3.6
3,600,167 + cas7e NIAGMN_18180 0.65 -1.7
3,600,167 + cas7e NIAGMN_18180 0.65 +0.2
3,600,167 + cas7e NIAGMN_18180 0.65 -0.2
3,600,168 - cas7e NIAGMN_18180 0.65 +0.9
3,600,168 - cas7e NIAGMN_18180 0.65 +0.5
3,600,168 - cas7e NIAGMN_18180 0.65 -0.9
3,600,168 - cas7e NIAGMN_18180 0.65 -0.9
3,600,169 + cas7e NIAGMN_18180 0.65 -2.2
3,600,169 + cas7e NIAGMN_18180 0.65 +0.3
3,600,169 + cas7e NIAGMN_18180 0.65 +0.2
3,600,170 - cas7e NIAGMN_18180 0.65 +0.8
3,600,170 - cas7e NIAGMN_18180 0.65 +0.6
3,600,222 + cas7e NIAGMN_18180 0.70 -0.6
3,600,226 + cas7e NIAGMN_18180 0.70 +1.5
3,600,227 - cas7e NIAGMN_18180 0.70 -1.1
3,600,227 - cas7e NIAGMN_18180 0.70 +1.6
3,600,247 + cas7e NIAGMN_18180 0.72 +1.2
3,600,262 + cas7e NIAGMN_18180 0.74 +0.1
3,600,262 + cas7e NIAGMN_18180 0.74 +0.5
3,600,308 + cas7e NIAGMN_18180 0.78 +1.2
3,600,371 + cas7e NIAGMN_18180 0.84 -0.6
3,600,399 + cas7e NIAGMN_18180 0.87 +0.9
3,600,399 + cas7e NIAGMN_18180 0.87 -0.4
3,600,399 + cas7e NIAGMN_18180 0.87 -0.2
3,600,399 + cas7e NIAGMN_18180 0.87 -0.0
3,600,400 - cas7e NIAGMN_18180 0.87 -0.3
3,600,400 - cas7e NIAGMN_18180 0.87 -1.1
3,600,400 - cas7e NIAGMN_18180 0.87 +1.0
3,600,400 - cas7e NIAGMN_18180 0.87 -0.4
3,600,418 + cas7e NIAGMN_18180 0.89 -0.1
3,600,418 + cas7e NIAGMN_18180 0.89 +0.2
3,600,419 - cas7e NIAGMN_18180 0.89 +2.1
3,600,421 + cas7e NIAGMN_18180 0.89 -0.4
3,600,422 - cas7e NIAGMN_18180 0.89 -0.9
3,600,422 - cas7e NIAGMN_18180 0.89 +0.2
3,600,422 - cas7e NIAGMN_18180 0.89 +0.3
3,600,422 - cas7e NIAGMN_18180 0.89 -0.3
3,600,422 - cas7e NIAGMN_18180 0.89 +0.1
3,600,445 + -0.1
3,600,445 + -1.9
3,600,445 + -0.2
3,600,446 - +0.0
3,600,452 + +2.1
3,600,452 + +0.8

Or see this region's nucleotide sequence