Strain Fitness in Escherichia coli ECRC102 around NIAGMN_17505

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_17500 and NIAGMN_17505 are separated by 66 nucleotidesNIAGMN_17505 and araC are separated by 345 nucleotides NIAGMN_17500: NIAGMN_17500 - Glyco-hydro-15 domain-containing protein, at 3,465,197 to 3,466,255 _17500 NIAGMN_17505: NIAGMN_17505 - GhoT/OrtT family toxin, at 3,466,322 to 3,466,501 _17505 NIAGMN_17510: araC - AraC family transcriptional regulator, at 3,466,847 to 3,467,596 araC Position (kb) 3466 3467Strain fitness (log2 ratio) -1 0 1at 3465.337 kb on + strand, within NIAGMN_17500at 3465.337 kb on + strand, within NIAGMN_17500at 3465.338 kb on - strand, within NIAGMN_17500at 3465.419 kb on + strand, within NIAGMN_17500at 3465.420 kb on - strand, within NIAGMN_17500at 3465.516 kb on + strand, within NIAGMN_17500at 3465.565 kb on + strand, within NIAGMN_17500at 3465.618 kb on + strand, within NIAGMN_17500at 3465.619 kb on - strand, within NIAGMN_17500at 3465.619 kb on - strand, within NIAGMN_17500at 3465.645 kb on + strand, within NIAGMN_17500at 3465.721 kb on - strand, within NIAGMN_17500at 3465.730 kb on + strand, within NIAGMN_17500at 3466.723 kb on + strandat 3466.775 kb on - strandat 3467.331 kb on + strand, within araCat 3467.371 kb on - strand, within araCat 3467.399 kb on - strand, within araCat 3467.403 kb on - strand, within araC

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,465,337 + NIAGMN_17500 0.13 +1.1
3,465,337 + NIAGMN_17500 0.13 -0.8
3,465,338 - NIAGMN_17500 0.13 -0.9
3,465,419 + NIAGMN_17500 0.21 -0.5
3,465,420 - NIAGMN_17500 0.21 +0.4
3,465,516 + NIAGMN_17500 0.30 -0.5
3,465,565 + NIAGMN_17500 0.35 +1.5
3,465,618 + NIAGMN_17500 0.40 +0.1
3,465,619 - NIAGMN_17500 0.40 -0.8
3,465,619 - NIAGMN_17500 0.40 -1.3
3,465,645 + NIAGMN_17500 0.42 +0.4
3,465,721 - NIAGMN_17500 0.49 +0.1
3,465,730 + NIAGMN_17500 0.50 +1.7
3,466,723 + -0.7
3,466,775 - +0.3
3,467,331 + araC NIAGMN_17510 0.65 -0.2
3,467,371 - araC NIAGMN_17510 0.70 +1.3
3,467,399 - araC NIAGMN_17510 0.74 -1.5
3,467,403 - araC NIAGMN_17510 0.74 +0.9

Or see this region's nucleotide sequence