Strain Fitness in Escherichia coli ECRC102 around NIAGMN_17500

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntactS and Gly_trna are separated by 78 nucleotidesGly_trna and NIAGMN_17495 are separated by 233 nucleotidesNIAGMN_17495 and NIAGMN_17500 overlap by 17 nucleotidesNIAGMN_17500 and NIAGMN_17505 are separated by 66 nucleotidesNIAGMN_17505 and araC are separated by 345 nucleotides NIAGMN_17485: actS - amidase activator ActS, at 3,463,509 to 3,464,264 actS NIAGMN_17490: Gly_trna - tRNA-Gly(ccc), at 3,464,343 to 3,464,416 _trna NIAGMN_17495: NIAGMN_17495 - Glyco-hydro-15 domain-containing protein, at 3,464,650 to 3,465,213 _17495 NIAGMN_17500: NIAGMN_17500 - Glyco-hydro-15 domain-containing protein, at 3,465,197 to 3,466,255 _17500 NIAGMN_17505: NIAGMN_17505 - GhoT/OrtT family toxin, at 3,466,322 to 3,466,501 _17505 NIAGMN_17510: araC - AraC family transcriptional regulator, at 3,466,847 to 3,467,596 araC Position (kb) 3465 3466 3467Strain fitness (log2 ratio) -2 -1 0 1 2at 3464.229 kb on + strandat 3464.230 kb on - strandat 3464.230 kb on - strandat 3464.313 kb on + strandat 3464.320 kb on + strandat 3464.330 kb on + strandat 3464.384 kb on + strand, within Gly_trnaat 3464.583 kb on - strandat 3464.601 kb on + strandat 3464.618 kb on - strandat 3464.618 kb on - strandat 3464.745 kb on - strand, within NIAGMN_17495at 3464.821 kb on + strand, within NIAGMN_17495at 3464.901 kb on - strand, within NIAGMN_17495at 3464.907 kb on - strand, within NIAGMN_17495at 3464.971 kb on - strand, within NIAGMN_17495at 3465.043 kb on + strand, within NIAGMN_17495at 3465.044 kb on - strand, within NIAGMN_17495at 3465.053 kb on + strand, within NIAGMN_17495at 3465.112 kb on + strand, within NIAGMN_17495at 3465.112 kb on + strand, within NIAGMN_17495at 3465.114 kb on + strand, within NIAGMN_17495at 3465.114 kb on + strand, within NIAGMN_17495at 3465.114 kb on + strand, within NIAGMN_17495at 3465.275 kb on - strandat 3465.315 kb on + strand, within NIAGMN_17500at 3465.316 kb on - strand, within NIAGMN_17500at 3465.316 kb on - strand, within NIAGMN_17500at 3465.337 kb on + strand, within NIAGMN_17500at 3465.337 kb on + strand, within NIAGMN_17500at 3465.338 kb on - strand, within NIAGMN_17500at 3465.419 kb on + strand, within NIAGMN_17500at 3465.420 kb on - strand, within NIAGMN_17500at 3465.516 kb on + strand, within NIAGMN_17500at 3465.565 kb on + strand, within NIAGMN_17500at 3465.618 kb on + strand, within NIAGMN_17500at 3465.619 kb on - strand, within NIAGMN_17500at 3465.619 kb on - strand, within NIAGMN_17500at 3465.645 kb on + strand, within NIAGMN_17500at 3465.721 kb on - strand, within NIAGMN_17500at 3465.730 kb on + strand, within NIAGMN_17500at 3466.723 kb on + strandat 3466.775 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,464,229 + +0.1
3,464,230 - +0.3
3,464,230 - -0.7
3,464,313 + -0.6
3,464,320 + -0.0
3,464,330 + +0.0
3,464,384 + Gly_trna NIAGMN_17490 0.55 -2.0
3,464,583 - +0.2
3,464,601 + +0.7
3,464,618 - -0.1
3,464,618 - +0.5
3,464,745 - NIAGMN_17495 0.17 -0.9
3,464,821 + NIAGMN_17495 0.30 +1.9
3,464,901 - NIAGMN_17495 0.45 -2.1
3,464,907 - NIAGMN_17495 0.46 +0.5
3,464,971 - NIAGMN_17495 0.57 -0.2
3,465,043 + NIAGMN_17495 0.70 -0.6
3,465,044 - NIAGMN_17495 0.70 +0.8
3,465,053 + NIAGMN_17495 0.71 +0.2
3,465,112 + NIAGMN_17495 0.82 +1.5
3,465,112 + NIAGMN_17495 0.82 -0.9
3,465,114 + NIAGMN_17495 0.82 +0.9
3,465,114 + NIAGMN_17495 0.82 -1.3
3,465,114 + NIAGMN_17495 0.82 -0.4
3,465,275 - +0.3
3,465,315 + NIAGMN_17500 0.11 -1.3
3,465,316 - NIAGMN_17500 0.11 +0.3
3,465,316 - NIAGMN_17500 0.11 -1.4
3,465,337 + NIAGMN_17500 0.13 +1.1
3,465,337 + NIAGMN_17500 0.13 -0.8
3,465,338 - NIAGMN_17500 0.13 -0.9
3,465,419 + NIAGMN_17500 0.21 -0.5
3,465,420 - NIAGMN_17500 0.21 +0.4
3,465,516 + NIAGMN_17500 0.30 -0.5
3,465,565 + NIAGMN_17500 0.35 +1.5
3,465,618 + NIAGMN_17500 0.40 +0.1
3,465,619 - NIAGMN_17500 0.40 -0.8
3,465,619 - NIAGMN_17500 0.40 -1.3
3,465,645 + NIAGMN_17500 0.42 +0.4
3,465,721 - NIAGMN_17500 0.49 +0.1
3,465,730 + NIAGMN_17500 0.50 +1.7
3,466,723 + -0.7
3,466,775 - +0.3

Or see this region's nucleotide sequence