Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt actS and Gly_trna are separated by 78 nucleotides Gly_trna and NIAGMN_17495 are separated by 233 nucleotides NIAGMN_17495 and NIAGMN_17500 overlap by 17 nucleotides NIAGMN_17500 and NIAGMN_17505 are separated by 66 nucleotides NIAGMN_17505 and araC are separated by 345 nucleotides
NIAGMN_17485: actS - amidase activator ActS, at 3,463,509 to 3,464,264
actS
NIAGMN_17490: Gly_trna - tRNA-Gly(ccc), at 3,464,343 to 3,464,416
_trna
NIAGMN_17495: NIAGMN_17495 - Glyco-hydro-15 domain-containing protein, at 3,464,650 to 3,465,213
_17495
NIAGMN_17500: NIAGMN_17500 - Glyco-hydro-15 domain-containing protein, at 3,465,197 to 3,466,255
_17500
NIAGMN_17505: NIAGMN_17505 - GhoT/OrtT family toxin, at 3,466,322 to 3,466,501
_17505
NIAGMN_17510: araC - AraC family transcriptional regulator, at 3,466,847 to 3,467,596
araC
Position (kb)
3465
3466
3467 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3464.229 kb on + strand at 3464.230 kb on - strand at 3464.230 kb on - strand at 3464.313 kb on + strand at 3464.320 kb on + strand at 3464.330 kb on + strand at 3464.384 kb on + strand, within Gly_trna at 3464.583 kb on - strand at 3464.601 kb on + strand at 3464.618 kb on - strand at 3464.618 kb on - strand at 3464.745 kb on - strand, within NIAGMN_17495 at 3464.821 kb on + strand, within NIAGMN_17495 at 3464.901 kb on - strand, within NIAGMN_17495 at 3464.907 kb on - strand, within NIAGMN_17495 at 3464.971 kb on - strand, within NIAGMN_17495 at 3465.043 kb on + strand, within NIAGMN_17495 at 3465.044 kb on - strand, within NIAGMN_17495 at 3465.053 kb on + strand, within NIAGMN_17495 at 3465.112 kb on + strand, within NIAGMN_17495 at 3465.112 kb on + strand, within NIAGMN_17495 at 3465.114 kb on + strand, within NIAGMN_17495 at 3465.114 kb on + strand, within NIAGMN_17495 at 3465.114 kb on + strand, within NIAGMN_17495 at 3465.275 kb on - strand at 3465.315 kb on + strand, within NIAGMN_17500 at 3465.316 kb on - strand, within NIAGMN_17500 at 3465.316 kb on - strand, within NIAGMN_17500 at 3465.337 kb on + strand, within NIAGMN_17500 at 3465.337 kb on + strand, within NIAGMN_17500 at 3465.338 kb on - strand, within NIAGMN_17500 at 3465.419 kb on + strand, within NIAGMN_17500 at 3465.420 kb on - strand, within NIAGMN_17500 at 3465.516 kb on + strand, within NIAGMN_17500 at 3465.565 kb on + strand, within NIAGMN_17500 at 3465.618 kb on + strand, within NIAGMN_17500 at 3465.619 kb on - strand, within NIAGMN_17500 at 3465.619 kb on - strand, within NIAGMN_17500 at 3465.645 kb on + strand, within NIAGMN_17500 at 3465.721 kb on - strand, within NIAGMN_17500 at 3465.730 kb on + strand, within NIAGMN_17500 at 3466.723 kb on + strand at 3466.775 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 3,464,229 + +0.1 3,464,230 - +0.3 3,464,230 - -0.7 3,464,313 + -0.6 3,464,320 + -0.0 3,464,330 + +0.0 3,464,384 + Gly_trna NIAGMN_17490 0.55 -2.0 3,464,583 - +0.2 3,464,601 + +0.7 3,464,618 - -0.1 3,464,618 - +0.5 3,464,745 - NIAGMN_17495 0.17 -0.9 3,464,821 + NIAGMN_17495 0.30 +1.9 3,464,901 - NIAGMN_17495 0.45 -2.1 3,464,907 - NIAGMN_17495 0.46 +0.5 3,464,971 - NIAGMN_17495 0.57 -0.2 3,465,043 + NIAGMN_17495 0.70 -0.6 3,465,044 - NIAGMN_17495 0.70 +0.8 3,465,053 + NIAGMN_17495 0.71 +0.2 3,465,112 + NIAGMN_17495 0.82 +1.5 3,465,112 + NIAGMN_17495 0.82 -0.9 3,465,114 + NIAGMN_17495 0.82 +0.9 3,465,114 + NIAGMN_17495 0.82 -1.3 3,465,114 + NIAGMN_17495 0.82 -0.4 3,465,275 - +0.3 3,465,315 + NIAGMN_17500 0.11 -1.3 3,465,316 - NIAGMN_17500 0.11 +0.3 3,465,316 - NIAGMN_17500 0.11 -1.4 3,465,337 + NIAGMN_17500 0.13 +1.1 3,465,337 + NIAGMN_17500 0.13 -0.8 3,465,338 - NIAGMN_17500 0.13 -0.9 3,465,419 + NIAGMN_17500 0.21 -0.5 3,465,420 - NIAGMN_17500 0.21 +0.4 3,465,516 + NIAGMN_17500 0.30 -0.5 3,465,565 + NIAGMN_17500 0.35 +1.5 3,465,618 + NIAGMN_17500 0.40 +0.1 3,465,619 - NIAGMN_17500 0.40 -0.8 3,465,619 - NIAGMN_17500 0.40 -1.3 3,465,645 + NIAGMN_17500 0.42 +0.4 3,465,721 - NIAGMN_17500 0.49 +0.1 3,465,730 + NIAGMN_17500 0.50 +1.7 3,466,723 + -0.7 3,466,775 - +0.3
Or see this region's nucleotide sequence