Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt epd and pgk are separated by 49 nucleotides pgk and fbaA are separated by 214 nucleotides
NIAGMN_17150: epd - erythrose-4-phosphate dehydrogenase, at 3,390,563 to 3,391,582
epd
NIAGMN_17155: pgk - phosphoglycerate kinase, at 3,391,632 to 3,392,795
pgk
NIAGMN_17160: fbaA - class II fructose-bisphosphate aldolase, at 3,393,010 to 3,394,089
fbaA
Position (kb)
3391
3392
3393 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3390.652 kb on + strand at 3390.653 kb on - strand at 3390.710 kb on + strand, within epd at 3390.710 kb on + strand, within epd at 3390.711 kb on - strand, within epd at 3390.744 kb on + strand, within epd at 3390.744 kb on + strand, within epd at 3390.846 kb on + strand, within epd at 3390.846 kb on + strand, within epd at 3390.846 kb on + strand, within epd at 3390.847 kb on - strand, within epd at 3390.867 kb on + strand, within epd at 3390.867 kb on + strand, within epd at 3390.867 kb on + strand, within epd at 3390.867 kb on + strand, within epd at 3390.867 kb on + strand, within epd at 3390.868 kb on - strand, within epd at 3390.868 kb on - strand, within epd at 3390.868 kb on - strand, within epd at 3390.869 kb on + strand, within epd at 3390.869 kb on + strand, within epd at 3390.869 kb on + strand, within epd at 3390.869 kb on + strand, within epd at 3390.870 kb on - strand, within epd at 3390.969 kb on - strand, within epd at 3391.016 kb on - strand, within epd at 3391.041 kb on + strand, within epd at 3391.041 kb on + strand, within epd at 3391.143 kb on - strand, within epd at 3391.143 kb on - strand, within epd at 3391.143 kb on - strand, within epd at 3391.199 kb on - strand, within epd at 3391.201 kb on + strand, within epd at 3391.201 kb on + strand, within epd at 3391.240 kb on + strand, within epd at 3391.240 kb on + strand, within epd at 3391.281 kb on + strand, within epd at 3391.281 kb on + strand, within epd at 3391.281 kb on + strand, within epd at 3391.281 kb on + strand, within epd at 3391.281 kb on + strand, within epd at 3391.282 kb on - strand, within epd at 3391.302 kb on + strand, within epd at 3391.384 kb on + strand, within epd at 3391.384 kb on + strand, within epd at 3391.384 kb on + strand, within epd at 3391.386 kb on + strand, within epd at 3391.386 kb on + strand, within epd at 3391.386 kb on + strand, within epd at 3391.394 kb on + strand, within epd at 3391.394 kb on + strand, within epd at 3391.426 kb on + strand, within epd at 3391.554 kb on + strand at 3391.554 kb on + strand at 3391.558 kb on + strand at 3391.558 kb on + strand at 3391.558 kb on + strand at 3391.558 kb on + strand at 3391.564 kb on + strand at 3392.752 kb on + strand at 3392.752 kb on + strand at 3392.971 kb on + strand at 3392.971 kb on + strand at 3392.971 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 3,390,652 + -0.4 3,390,653 - -1.1 3,390,710 + epd NIAGMN_17150 0.14 +1.4 3,390,710 + epd NIAGMN_17150 0.14 -1.0 3,390,711 - epd NIAGMN_17150 0.15 -0.6 3,390,744 + epd NIAGMN_17150 0.18 -1.1 3,390,744 + epd NIAGMN_17150 0.18 -0.1 3,390,846 + epd NIAGMN_17150 0.28 -1.0 3,390,846 + epd NIAGMN_17150 0.28 -1.3 3,390,846 + epd NIAGMN_17150 0.28 -0.1 3,390,847 - epd NIAGMN_17150 0.28 +1.4 3,390,867 + epd NIAGMN_17150 0.30 -0.1 3,390,867 + epd NIAGMN_17150 0.30 +0.5 3,390,867 + epd NIAGMN_17150 0.30 -0.0 3,390,867 + epd NIAGMN_17150 0.30 +0.4 3,390,867 + epd NIAGMN_17150 0.30 -0.3 3,390,868 - epd NIAGMN_17150 0.30 -2.4 3,390,868 - epd NIAGMN_17150 0.30 -1.1 3,390,868 - epd NIAGMN_17150 0.30 -1.7 3,390,869 + epd NIAGMN_17150 0.30 +0.1 3,390,869 + epd NIAGMN_17150 0.30 -0.5 3,390,869 + epd NIAGMN_17150 0.30 -1.2 3,390,869 + epd NIAGMN_17150 0.30 +0.1 3,390,870 - epd NIAGMN_17150 0.30 +0.1 3,390,969 - epd NIAGMN_17150 0.40 -0.6 3,391,016 - epd NIAGMN_17150 0.44 +0.3 3,391,041 + epd NIAGMN_17150 0.47 -2.0 3,391,041 + epd NIAGMN_17150 0.47 -1.3 3,391,143 - epd NIAGMN_17150 0.57 -0.7 3,391,143 - epd NIAGMN_17150 0.57 -2.6 3,391,143 - epd NIAGMN_17150 0.57 -0.1 3,391,199 - epd NIAGMN_17150 0.62 -0.5 3,391,201 + epd NIAGMN_17150 0.63 -1.0 3,391,201 + epd NIAGMN_17150 0.63 -0.0 3,391,240 + epd NIAGMN_17150 0.66 -0.5 3,391,240 + epd NIAGMN_17150 0.66 -0.1 3,391,281 + epd NIAGMN_17150 0.70 -0.4 3,391,281 + epd NIAGMN_17150 0.70 -0.2 3,391,281 + epd NIAGMN_17150 0.70 -0.6 3,391,281 + epd NIAGMN_17150 0.70 -0.4 3,391,281 + epd NIAGMN_17150 0.70 -0.3 3,391,282 - epd NIAGMN_17150 0.70 +0.6 3,391,302 + epd NIAGMN_17150 0.72 -1.2 3,391,384 + epd NIAGMN_17150 0.80 +0.5 3,391,384 + epd NIAGMN_17150 0.80 +0.3 3,391,384 + epd NIAGMN_17150 0.80 +0.9 3,391,386 + epd NIAGMN_17150 0.81 -0.1 3,391,386 + epd NIAGMN_17150 0.81 +0.4 3,391,386 + epd NIAGMN_17150 0.81 +0.5 3,391,394 + epd NIAGMN_17150 0.81 -0.3 3,391,394 + epd NIAGMN_17150 0.81 -1.4 3,391,426 + epd NIAGMN_17150 0.85 -0.8 3,391,554 + +0.1 3,391,554 + -0.1 3,391,558 + -0.2 3,391,558 + -1.2 3,391,558 + -1.0 3,391,558 + -1.0 3,391,564 + -0.0 3,392,752 + -3.1 3,392,752 + -1.3 3,392,971 + -1.9 3,392,971 + +0.0 3,392,971 + -1.7
Or see this region's nucleotide sequence