Strain Fitness in Escherichia coli ECRC102 around NIAGMN_17155

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntepd and pgk are separated by 49 nucleotidespgk and fbaA are separated by 214 nucleotides NIAGMN_17150: epd - erythrose-4-phosphate dehydrogenase, at 3,390,563 to 3,391,582 epd NIAGMN_17155: pgk - phosphoglycerate kinase, at 3,391,632 to 3,392,795 pgk NIAGMN_17160: fbaA - class II fructose-bisphosphate aldolase, at 3,393,010 to 3,394,089 fbaA Position (kb) 3391 3392 3393Strain fitness (log2 ratio) -3 -2 -1 0 1at 3390.652 kb on + strandat 3390.653 kb on - strandat 3390.710 kb on + strand, within epdat 3390.710 kb on + strand, within epdat 3390.711 kb on - strand, within epdat 3390.744 kb on + strand, within epdat 3390.744 kb on + strand, within epdat 3390.846 kb on + strand, within epdat 3390.846 kb on + strand, within epdat 3390.846 kb on + strand, within epdat 3390.847 kb on - strand, within epdat 3390.867 kb on + strand, within epdat 3390.867 kb on + strand, within epdat 3390.867 kb on + strand, within epdat 3390.867 kb on + strand, within epdat 3390.867 kb on + strand, within epdat 3390.868 kb on - strand, within epdat 3390.868 kb on - strand, within epdat 3390.868 kb on - strand, within epdat 3390.869 kb on + strand, within epdat 3390.869 kb on + strand, within epdat 3390.869 kb on + strand, within epdat 3390.869 kb on + strand, within epdat 3390.870 kb on - strand, within epdat 3390.969 kb on - strand, within epdat 3391.016 kb on - strand, within epdat 3391.041 kb on + strand, within epdat 3391.041 kb on + strand, within epdat 3391.143 kb on - strand, within epdat 3391.143 kb on - strand, within epdat 3391.143 kb on - strand, within epdat 3391.199 kb on - strand, within epdat 3391.201 kb on + strand, within epdat 3391.201 kb on + strand, within epdat 3391.240 kb on + strand, within epdat 3391.240 kb on + strand, within epdat 3391.281 kb on + strand, within epdat 3391.281 kb on + strand, within epdat 3391.281 kb on + strand, within epdat 3391.281 kb on + strand, within epdat 3391.281 kb on + strand, within epdat 3391.282 kb on - strand, within epdat 3391.302 kb on + strand, within epdat 3391.384 kb on + strand, within epdat 3391.384 kb on + strand, within epdat 3391.384 kb on + strand, within epdat 3391.386 kb on + strand, within epdat 3391.386 kb on + strand, within epdat 3391.386 kb on + strand, within epdat 3391.394 kb on + strand, within epdat 3391.394 kb on + strand, within epdat 3391.426 kb on + strand, within epdat 3391.554 kb on + strandat 3391.554 kb on + strandat 3391.558 kb on + strandat 3391.558 kb on + strandat 3391.558 kb on + strandat 3391.558 kb on + strandat 3391.564 kb on + strandat 3392.752 kb on + strandat 3392.752 kb on + strandat 3392.971 kb on + strandat 3392.971 kb on + strandat 3392.971 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,390,652 + -0.4
3,390,653 - -1.1
3,390,710 + epd NIAGMN_17150 0.14 +1.4
3,390,710 + epd NIAGMN_17150 0.14 -1.0
3,390,711 - epd NIAGMN_17150 0.15 -0.6
3,390,744 + epd NIAGMN_17150 0.18 -1.1
3,390,744 + epd NIAGMN_17150 0.18 -0.1
3,390,846 + epd NIAGMN_17150 0.28 -1.0
3,390,846 + epd NIAGMN_17150 0.28 -1.3
3,390,846 + epd NIAGMN_17150 0.28 -0.1
3,390,847 - epd NIAGMN_17150 0.28 +1.4
3,390,867 + epd NIAGMN_17150 0.30 -0.1
3,390,867 + epd NIAGMN_17150 0.30 +0.5
3,390,867 + epd NIAGMN_17150 0.30 -0.0
3,390,867 + epd NIAGMN_17150 0.30 +0.4
3,390,867 + epd NIAGMN_17150 0.30 -0.3
3,390,868 - epd NIAGMN_17150 0.30 -2.4
3,390,868 - epd NIAGMN_17150 0.30 -1.1
3,390,868 - epd NIAGMN_17150 0.30 -1.7
3,390,869 + epd NIAGMN_17150 0.30 +0.1
3,390,869 + epd NIAGMN_17150 0.30 -0.5
3,390,869 + epd NIAGMN_17150 0.30 -1.2
3,390,869 + epd NIAGMN_17150 0.30 +0.1
3,390,870 - epd NIAGMN_17150 0.30 +0.1
3,390,969 - epd NIAGMN_17150 0.40 -0.6
3,391,016 - epd NIAGMN_17150 0.44 +0.3
3,391,041 + epd NIAGMN_17150 0.47 -2.0
3,391,041 + epd NIAGMN_17150 0.47 -1.3
3,391,143 - epd NIAGMN_17150 0.57 -0.7
3,391,143 - epd NIAGMN_17150 0.57 -2.6
3,391,143 - epd NIAGMN_17150 0.57 -0.1
3,391,199 - epd NIAGMN_17150 0.62 -0.5
3,391,201 + epd NIAGMN_17150 0.63 -1.0
3,391,201 + epd NIAGMN_17150 0.63 -0.0
3,391,240 + epd NIAGMN_17150 0.66 -0.5
3,391,240 + epd NIAGMN_17150 0.66 -0.1
3,391,281 + epd NIAGMN_17150 0.70 -0.4
3,391,281 + epd NIAGMN_17150 0.70 -0.2
3,391,281 + epd NIAGMN_17150 0.70 -0.6
3,391,281 + epd NIAGMN_17150 0.70 -0.4
3,391,281 + epd NIAGMN_17150 0.70 -0.3
3,391,282 - epd NIAGMN_17150 0.70 +0.6
3,391,302 + epd NIAGMN_17150 0.72 -1.2
3,391,384 + epd NIAGMN_17150 0.80 +0.5
3,391,384 + epd NIAGMN_17150 0.80 +0.3
3,391,384 + epd NIAGMN_17150 0.80 +0.9
3,391,386 + epd NIAGMN_17150 0.81 -0.1
3,391,386 + epd NIAGMN_17150 0.81 +0.4
3,391,386 + epd NIAGMN_17150 0.81 +0.5
3,391,394 + epd NIAGMN_17150 0.81 -0.3
3,391,394 + epd NIAGMN_17150 0.81 -1.4
3,391,426 + epd NIAGMN_17150 0.85 -0.8
3,391,554 + +0.1
3,391,554 + -0.1
3,391,558 + -0.2
3,391,558 + -1.2
3,391,558 + -1.0
3,391,558 + -1.0
3,391,564 + -0.0
3,392,752 + -3.1
3,392,752 + -1.3
3,392,971 + -1.9
3,392,971 + +0.0
3,392,971 + -1.7

Or see this region's nucleotide sequence