Strain Fitness in Escherichia coli ECRC102 around NIAGMN_16260

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyqjE and yqjD are separated by 2 nucleotidesyqjD and yqjC are separated by 37 nucleotidesyqjC and mzrA are separated by 146 nucleotidesmzrA and mzrA are separated by 3 nucleotidesmzrA and yqiM are separated by 21 nucleotides NIAGMN_16245: yqjE - Inner membrane protein YqjE, at 3,212,009 to 3,212,413 yqjE NIAGMN_16250: yqjD - Uncharacterized protein YqjD, at 3,212,416 to 3,212,721 yqjD NIAGMN_16255: yqjC - Protein YqjC, at 3,212,759 to 3,213,127 yqjC NIAGMN_16260: mzrA - EnvZ/OmpR regulon moderator MzrA, at 3,213,274 to 3,213,657 mzrA NIAGMN_16265: mzrA - EnvZ/OmpR regulon moderator MzrA, at 3,213,661 to 3,214,323 mzrA NIAGMN_16270: yqiM - Protein YqiM, at 3,214,345 to 3,214,422 yqiM Position (kb) 3213 3214Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3212.279 kb on - strand, within yqjEat 3212.414 kb on - strandat 3212.417 kb on + strandat 3212.417 kb on + strandat 3212.447 kb on - strand, within yqjDat 3212.498 kb on + strand, within yqjDat 3212.498 kb on + strand, within yqjDat 3212.499 kb on - strand, within yqjDat 3212.499 kb on - strand, within yqjDat 3212.499 kb on - strand, within yqjDat 3212.499 kb on - strand, within yqjDat 3212.499 kb on - strand, within yqjDat 3212.499 kb on - strand, within yqjDat 3212.601 kb on + strand, within yqjDat 3212.611 kb on - strand, within yqjDat 3212.611 kb on - strand, within yqjDat 3212.611 kb on - strand, within yqjDat 3212.646 kb on + strand, within yqjDat 3212.646 kb on + strand, within yqjDat 3212.646 kb on + strand, within yqjDat 3212.646 kb on + strand, within yqjDat 3212.647 kb on - strand, within yqjDat 3212.647 kb on - strand, within yqjDat 3212.647 kb on - strand, within yqjDat 3212.647 kb on - strand, within yqjDat 3212.647 kb on - strand, within yqjDat 3212.647 kb on - strand, within yqjDat 3212.647 kb on - strand, within yqjDat 3212.647 kb on - strand, within yqjDat 3212.647 kb on - strand, within yqjDat 3212.647 kb on - strand, within yqjDat 3212.647 kb on - strand, within yqjDat 3212.665 kb on - strand, within yqjDat 3212.722 kb on - strandat 3212.722 kb on - strandat 3212.739 kb on + strandat 3212.739 kb on + strandat 3212.740 kb on - strandat 3212.740 kb on - strandat 3212.740 kb on - strandat 3212.740 kb on - strandat 3212.744 kb on - strandat 3212.751 kb on - strandat 3212.751 kb on - strandat 3212.751 kb on - strandat 3212.751 kb on - strandat 3212.751 kb on - strandat 3212.760 kb on + strandat 3212.761 kb on - strandat 3212.761 kb on - strandat 3212.764 kb on - strandat 3212.834 kb on - strand, within yqjCat 3212.938 kb on + strand, within yqjCat 3212.989 kb on + strand, within yqjCat 3212.990 kb on - strand, within yqjCat 3213.018 kb on + strand, within yqjCat 3213.018 kb on + strand, within yqjCat 3213.018 kb on + strand, within yqjCat 3213.018 kb on + strand, within yqjCat 3213.018 kb on + strand, within yqjCat 3213.019 kb on - strand, within yqjCat 3213.019 kb on - strand, within yqjCat 3213.019 kb on - strand, within yqjCat 3213.019 kb on - strand, within yqjCat 3213.064 kb on + strand, within yqjCat 3213.064 kb on + strand, within yqjCat 3213.065 kb on - strand, within yqjCat 3213.072 kb on + strand, within yqjCat 3213.072 kb on + strand, within yqjCat 3213.072 kb on + strand, within yqjCat 3213.072 kb on + strand, within yqjCat 3213.073 kb on - strand, within yqjCat 3213.073 kb on - strand, within yqjCat 3213.073 kb on - strand, within yqjCat 3213.076 kb on + strand, within yqjCat 3213.077 kb on - strand, within yqjCat 3213.085 kb on + strand, within yqjCat 3213.086 kb on - strand, within yqjCat 3213.107 kb on + strandat 3213.108 kb on - strandat 3213.108 kb on - strandat 3213.120 kb on + strandat 3213.121 kb on - strandat 3213.156 kb on + strandat 3213.156 kb on + strandat 3213.156 kb on + strandat 3213.156 kb on + strandat 3213.156 kb on + strandat 3213.157 kb on - strandat 3213.157 kb on - strandat 3213.159 kb on + strandat 3213.159 kb on + strandat 3213.160 kb on - strandat 3213.160 kb on - strandat 3213.160 kb on - strandat 3213.160 kb on - strandat 3213.214 kb on - strandat 3213.219 kb on + strandat 3213.227 kb on + strandat 3213.321 kb on + strand, within mzrAat 3213.322 kb on - strand, within mzrAat 3213.322 kb on - strand, within mzrAat 3213.333 kb on + strand, within mzrAat 3213.334 kb on - strand, within mzrAat 3213.334 kb on - strand, within mzrAat 3213.334 kb on - strand, within mzrAat 3213.356 kb on + strand, within mzrAat 3213.356 kb on + strand, within mzrAat 3213.356 kb on + strand, within mzrAat 3213.357 kb on - strand, within mzrAat 3213.357 kb on - strand, within mzrAat 3213.357 kb on - strand, within mzrAat 3213.357 kb on - strand, within mzrAat 3213.357 kb on - strand, within mzrAat 3213.423 kb on + strand, within mzrAat 3213.424 kb on - strand, within mzrAat 3213.424 kb on - strand, within mzrAat 3213.427 kb on + strand, within mzrAat 3213.427 kb on + strand, within mzrAat 3213.453 kb on + strand, within mzrAat 3213.453 kb on + strand, within mzrAat 3213.454 kb on - strand, within mzrAat 3213.550 kb on - strand, within mzrAat 3213.550 kb on - strand, within mzrAat 3213.550 kb on - strand, within mzrAat 3213.605 kb on - strand, within mzrAat 3213.605 kb on - strand, within mzrAat 3213.626 kb on - strandat 3213.650 kb on - strandat 3213.695 kb on - strandat 3213.695 kb on - strandat 3213.778 kb on + strand, within mzrAat 3213.806 kb on + strand, within mzrAat 3213.806 kb on + strand, within mzrAat 3213.807 kb on - strand, within mzrAat 3213.807 kb on - strand, within mzrAat 3213.931 kb on - strand, within mzrAat 3213.943 kb on + strand, within mzrAat 3213.943 kb on + strand, within mzrAat 3213.944 kb on - strand, within mzrAat 3213.995 kb on + strand, within mzrAat 3213.996 kb on - strand, within mzrAat 3213.996 kb on - strand, within mzrAat 3214.015 kb on + strand, within mzrAat 3214.016 kb on - strand, within mzrAat 3214.064 kb on + strand, within mzrAat 3214.064 kb on + strand, within mzrAat 3214.065 kb on - strand, within mzrAat 3214.065 kb on - strand, within mzrAat 3214.065 kb on - strand, within mzrAat 3214.065 kb on - strand, within mzrAat 3214.065 kb on - strand, within mzrAat 3214.222 kb on + strand, within mzrAat 3214.238 kb on + strand, within mzrAat 3214.238 kb on + strand, within mzrAat 3214.238 kb on + strand, within mzrAat 3214.328 kb on + strandat 3214.329 kb on - strandat 3214.386 kb on + strand, within yqiMat 3214.387 kb on - strand, within yqiMat 3214.400 kb on + strand, within yqiMat 3214.418 kb on + strandat 3214.419 kb on - strandat 3214.419 kb on - strandat 3214.419 kb on - strandat 3214.419 kb on - strandat 3214.438 kb on + strandat 3214.438 kb on + strandat 3214.438 kb on + strandat 3214.439 kb on - strandat 3214.439 kb on - strandat 3214.439 kb on - strandat 3214.460 kb on + strandat 3214.461 kb on - strandat 3214.461 kb on - strandat 3214.481 kb on - strandat 3214.481 kb on - strandat 3214.497 kb on + strandat 3214.497 kb on + strandat 3214.497 kb on + strandat 3214.504 kb on - strandat 3214.504 kb on - strandat 3214.504 kb on - strandat 3214.535 kb on + strandat 3214.535 kb on + strandat 3214.535 kb on + strandat 3214.535 kb on + strandat 3214.535 kb on + strandat 3214.590 kb on + strandat 3214.591 kb on - strandat 3214.610 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,212,279 - yqjE NIAGMN_16245 0.67 +1.7
3,212,414 - -0.5
3,212,417 + -2.8
3,212,417 + -1.0
3,212,447 - yqjD NIAGMN_16250 0.10 -0.1
3,212,498 + yqjD NIAGMN_16250 0.27 +0.2
3,212,498 + yqjD NIAGMN_16250 0.27 -1.8
3,212,499 - yqjD NIAGMN_16250 0.27 +0.4
3,212,499 - yqjD NIAGMN_16250 0.27 -0.1
3,212,499 - yqjD NIAGMN_16250 0.27 -0.8
3,212,499 - yqjD NIAGMN_16250 0.27 -1.4
3,212,499 - yqjD NIAGMN_16250 0.27 +0.9
3,212,499 - yqjD NIAGMN_16250 0.27 +2.1
3,212,601 + yqjD NIAGMN_16250 0.60 -2.0
3,212,611 - yqjD NIAGMN_16250 0.64 +0.9
3,212,611 - yqjD NIAGMN_16250 0.64 -0.5
3,212,611 - yqjD NIAGMN_16250 0.64 -0.5
3,212,646 + yqjD NIAGMN_16250 0.75 -0.7
3,212,646 + yqjD NIAGMN_16250 0.75 -0.8
3,212,646 + yqjD NIAGMN_16250 0.75 -0.4
3,212,646 + yqjD NIAGMN_16250 0.75 +1.4
3,212,647 - yqjD NIAGMN_16250 0.75 +1.7
3,212,647 - yqjD NIAGMN_16250 0.75 +1.5
3,212,647 - yqjD NIAGMN_16250 0.75 -1.0
3,212,647 - yqjD NIAGMN_16250 0.75 -0.1
3,212,647 - yqjD NIAGMN_16250 0.75 -0.6
3,212,647 - yqjD NIAGMN_16250 0.75 +0.8
3,212,647 - yqjD NIAGMN_16250 0.75 -0.2
3,212,647 - yqjD NIAGMN_16250 0.75 -1.3
3,212,647 - yqjD NIAGMN_16250 0.75 +0.7
3,212,647 - yqjD NIAGMN_16250 0.75 +0.2
3,212,647 - yqjD NIAGMN_16250 0.75 -2.6
3,212,665 - yqjD NIAGMN_16250 0.81 +0.2
3,212,722 - -0.0
3,212,722 - +0.2
3,212,739 + -1.2
3,212,739 + -0.7
3,212,740 - -2.0
3,212,740 - +0.7
3,212,740 - -0.7
3,212,740 - +0.0
3,212,744 - +0.0
3,212,751 - -0.9
3,212,751 - -0.4
3,212,751 - +0.4
3,212,751 - +1.1
3,212,751 - -0.9
3,212,760 + +1.2
3,212,761 - -0.4
3,212,761 - -0.6
3,212,764 - +0.3
3,212,834 - yqjC NIAGMN_16255 0.20 +0.0
3,212,938 + yqjC NIAGMN_16255 0.49 -0.1
3,212,989 + yqjC NIAGMN_16255 0.62 -0.2
3,212,990 - yqjC NIAGMN_16255 0.63 -2.9
3,213,018 + yqjC NIAGMN_16255 0.70 +0.3
3,213,018 + yqjC NIAGMN_16255 0.70 +1.0
3,213,018 + yqjC NIAGMN_16255 0.70 +1.7
3,213,018 + yqjC NIAGMN_16255 0.70 -1.0
3,213,018 + yqjC NIAGMN_16255 0.70 +0.4
3,213,019 - yqjC NIAGMN_16255 0.70 -0.1
3,213,019 - yqjC NIAGMN_16255 0.70 +0.8
3,213,019 - yqjC NIAGMN_16255 0.70 -0.8
3,213,019 - yqjC NIAGMN_16255 0.70 +0.1
3,213,064 + yqjC NIAGMN_16255 0.83 -0.8
3,213,064 + yqjC NIAGMN_16255 0.83 -0.5
3,213,065 - yqjC NIAGMN_16255 0.83 +1.5
3,213,072 + yqjC NIAGMN_16255 0.85 -0.5
3,213,072 + yqjC NIAGMN_16255 0.85 +0.4
3,213,072 + yqjC NIAGMN_16255 0.85 +0.1
3,213,072 + yqjC NIAGMN_16255 0.85 -0.1
3,213,073 - yqjC NIAGMN_16255 0.85 +1.1
3,213,073 - yqjC NIAGMN_16255 0.85 -0.2
3,213,073 - yqjC NIAGMN_16255 0.85 -1.2
3,213,076 + yqjC NIAGMN_16255 0.86 -0.9
3,213,077 - yqjC NIAGMN_16255 0.86 +0.7
3,213,085 + yqjC NIAGMN_16255 0.88 -0.3
3,213,086 - yqjC NIAGMN_16255 0.89 -0.5
3,213,107 + +1.3
3,213,108 - -0.5
3,213,108 - +0.4
3,213,120 + -0.3
3,213,121 - +1.4
3,213,156 + -0.8
3,213,156 + -0.5
3,213,156 + +0.2
3,213,156 + +0.9
3,213,156 + -0.5
3,213,157 - +0.4
3,213,157 - +0.4
3,213,159 + -1.2
3,213,159 + +0.3
3,213,160 - +0.5
3,213,160 - -1.0
3,213,160 - -0.9
3,213,160 - -3.2
3,213,214 - +0.6
3,213,219 + +0.1
3,213,227 + +0.2
3,213,321 + mzrA NIAGMN_16260 0.12 +1.4
3,213,322 - mzrA NIAGMN_16260 0.12 -1.5
3,213,322 - mzrA NIAGMN_16260 0.12 +0.0
3,213,333 + mzrA NIAGMN_16260 0.15 +0.6
3,213,334 - mzrA NIAGMN_16260 0.16 +0.2
3,213,334 - mzrA NIAGMN_16260 0.16 +0.1
3,213,334 - mzrA NIAGMN_16260 0.16 -2.0
3,213,356 + mzrA NIAGMN_16260 0.21 +0.3
3,213,356 + mzrA NIAGMN_16260 0.21 +0.7
3,213,356 + mzrA NIAGMN_16260 0.21 +0.5
3,213,357 - mzrA NIAGMN_16260 0.22 -0.2
3,213,357 - mzrA NIAGMN_16260 0.22 -0.3
3,213,357 - mzrA NIAGMN_16260 0.22 +0.2
3,213,357 - mzrA NIAGMN_16260 0.22 -1.1
3,213,357 - mzrA NIAGMN_16260 0.22 -1.4
3,213,423 + mzrA NIAGMN_16260 0.39 +0.1
3,213,424 - mzrA NIAGMN_16260 0.39 +0.7
3,213,424 - mzrA NIAGMN_16260 0.39 +1.9
3,213,427 + mzrA NIAGMN_16260 0.40 -1.1
3,213,427 + mzrA NIAGMN_16260 0.40 -0.5
3,213,453 + mzrA NIAGMN_16260 0.47 +1.9
3,213,453 + mzrA NIAGMN_16260 0.47 +0.3
3,213,454 - mzrA NIAGMN_16260 0.47 -0.0
3,213,550 - mzrA NIAGMN_16260 0.72 +0.6
3,213,550 - mzrA NIAGMN_16260 0.72 +0.4
3,213,550 - mzrA NIAGMN_16260 0.72 +0.2
3,213,605 - mzrA NIAGMN_16260 0.86 +0.2
3,213,605 - mzrA NIAGMN_16260 0.86 +0.5
3,213,626 - +0.5
3,213,650 - +0.5
3,213,695 - +0.1
3,213,695 - -0.0
3,213,778 + mzrA NIAGMN_16265 0.18 +0.9
3,213,806 + mzrA NIAGMN_16265 0.22 -0.9
3,213,806 + mzrA NIAGMN_16265 0.22 -1.2
3,213,807 - mzrA NIAGMN_16265 0.22 +0.9
3,213,807 - mzrA NIAGMN_16265 0.22 -0.6
3,213,931 - mzrA NIAGMN_16265 0.41 -1.4
3,213,943 + mzrA NIAGMN_16265 0.43 +1.9
3,213,943 + mzrA NIAGMN_16265 0.43 +1.5
3,213,944 - mzrA NIAGMN_16265 0.43 -0.3
3,213,995 + mzrA NIAGMN_16265 0.50 -1.1
3,213,996 - mzrA NIAGMN_16265 0.51 +0.8
3,213,996 - mzrA NIAGMN_16265 0.51 +1.6
3,214,015 + mzrA NIAGMN_16265 0.53 +0.8
3,214,016 - mzrA NIAGMN_16265 0.54 -0.6
3,214,064 + mzrA NIAGMN_16265 0.61 +1.1
3,214,064 + mzrA NIAGMN_16265 0.61 -0.7
3,214,065 - mzrA NIAGMN_16265 0.61 +0.1
3,214,065 - mzrA NIAGMN_16265 0.61 +1.7
3,214,065 - mzrA NIAGMN_16265 0.61 +1.5
3,214,065 - mzrA NIAGMN_16265 0.61 +0.5
3,214,065 - mzrA NIAGMN_16265 0.61 +0.3
3,214,222 + mzrA NIAGMN_16265 0.85 +1.2
3,214,238 + mzrA NIAGMN_16265 0.87 +0.3
3,214,238 + mzrA NIAGMN_16265 0.87 -2.0
3,214,238 + mzrA NIAGMN_16265 0.87 +0.6
3,214,328 + -0.8
3,214,329 - -2.5
3,214,386 + yqiM NIAGMN_16270 0.53 -0.3
3,214,387 - yqiM NIAGMN_16270 0.54 +0.4
3,214,400 + yqiM NIAGMN_16270 0.71 +1.1
3,214,418 + +0.2
3,214,419 - -0.0
3,214,419 - -0.5
3,214,419 - -2.1
3,214,419 - +0.2
3,214,438 + -3.0
3,214,438 + -0.3
3,214,438 + +0.6
3,214,439 - +0.3
3,214,439 - +0.3
3,214,439 - -0.5
3,214,460 + +0.0
3,214,461 - +0.3
3,214,461 - -0.0
3,214,481 - +1.0
3,214,481 - -0.4
3,214,497 + +0.1
3,214,497 + +2.0
3,214,497 + -0.1
3,214,504 - +0.9
3,214,504 - +0.8
3,214,504 - +0.6
3,214,535 + +0.1
3,214,535 + +1.1
3,214,535 + -0.3
3,214,535 + +0.5
3,214,535 + +0.3
3,214,590 + -0.2
3,214,591 - -0.8
3,214,610 - +0.4

Or see this region's nucleotide sequence