Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yqjE and yqjD are separated by 2 nucleotides yqjD and yqjC are separated by 37 nucleotides yqjC and mzrA are separated by 146 nucleotides mzrA and mzrA are separated by 3 nucleotides mzrA and yqiM are separated by 21 nucleotides
NIAGMN_16245: yqjE - Inner membrane protein YqjE, at 3,212,009 to 3,212,413
yqjE
NIAGMN_16250: yqjD - Uncharacterized protein YqjD, at 3,212,416 to 3,212,721
yqjD
NIAGMN_16255: yqjC - Protein YqjC, at 3,212,759 to 3,213,127
yqjC
NIAGMN_16260: mzrA - EnvZ/OmpR regulon moderator MzrA, at 3,213,274 to 3,213,657
mzrA
NIAGMN_16265: mzrA - EnvZ/OmpR regulon moderator MzrA, at 3,213,661 to 3,214,323
mzrA
NIAGMN_16270: yqiM - Protein YqiM, at 3,214,345 to 3,214,422
yqiM
Position (kb)
3213
3214 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3212.279 kb on - strand, within yqjE at 3212.414 kb on - strand at 3212.417 kb on + strand at 3212.417 kb on + strand at 3212.447 kb on - strand, within yqjD at 3212.498 kb on + strand, within yqjD at 3212.498 kb on + strand, within yqjD at 3212.499 kb on - strand, within yqjD at 3212.499 kb on - strand, within yqjD at 3212.499 kb on - strand, within yqjD at 3212.499 kb on - strand, within yqjD at 3212.499 kb on - strand, within yqjD at 3212.499 kb on - strand, within yqjD at 3212.601 kb on + strand, within yqjD at 3212.611 kb on - strand, within yqjD at 3212.611 kb on - strand, within yqjD at 3212.611 kb on - strand, within yqjD at 3212.646 kb on + strand, within yqjD at 3212.646 kb on + strand, within yqjD at 3212.646 kb on + strand, within yqjD at 3212.646 kb on + strand, within yqjD at 3212.647 kb on - strand, within yqjD at 3212.647 kb on - strand, within yqjD at 3212.647 kb on - strand, within yqjD at 3212.647 kb on - strand, within yqjD at 3212.647 kb on - strand, within yqjD at 3212.647 kb on - strand, within yqjD at 3212.647 kb on - strand, within yqjD at 3212.647 kb on - strand, within yqjD at 3212.647 kb on - strand, within yqjD at 3212.647 kb on - strand, within yqjD at 3212.647 kb on - strand, within yqjD at 3212.665 kb on - strand, within yqjD at 3212.722 kb on - strand at 3212.722 kb on - strand at 3212.739 kb on + strand at 3212.739 kb on + strand at 3212.740 kb on - strand at 3212.740 kb on - strand at 3212.740 kb on - strand at 3212.740 kb on - strand at 3212.744 kb on - strand at 3212.751 kb on - strand at 3212.751 kb on - strand at 3212.751 kb on - strand at 3212.751 kb on - strand at 3212.751 kb on - strand at 3212.760 kb on + strand at 3212.761 kb on - strand at 3212.761 kb on - strand at 3212.764 kb on - strand at 3212.834 kb on - strand, within yqjC at 3212.938 kb on + strand, within yqjC at 3212.989 kb on + strand, within yqjC at 3212.990 kb on - strand, within yqjC at 3213.018 kb on + strand, within yqjC at 3213.018 kb on + strand, within yqjC at 3213.018 kb on + strand, within yqjC at 3213.018 kb on + strand, within yqjC at 3213.018 kb on + strand, within yqjC at 3213.019 kb on - strand, within yqjC at 3213.019 kb on - strand, within yqjC at 3213.019 kb on - strand, within yqjC at 3213.019 kb on - strand, within yqjC at 3213.064 kb on + strand, within yqjC at 3213.064 kb on + strand, within yqjC at 3213.065 kb on - strand, within yqjC at 3213.072 kb on + strand, within yqjC at 3213.072 kb on + strand, within yqjC at 3213.072 kb on + strand, within yqjC at 3213.072 kb on + strand, within yqjC at 3213.073 kb on - strand, within yqjC at 3213.073 kb on - strand, within yqjC at 3213.073 kb on - strand, within yqjC at 3213.076 kb on + strand, within yqjC at 3213.077 kb on - strand, within yqjC at 3213.085 kb on + strand, within yqjC at 3213.086 kb on - strand, within yqjC at 3213.107 kb on + strand at 3213.108 kb on - strand at 3213.108 kb on - strand at 3213.120 kb on + strand at 3213.121 kb on - strand at 3213.156 kb on + strand at 3213.156 kb on + strand at 3213.156 kb on + strand at 3213.156 kb on + strand at 3213.156 kb on + strand at 3213.157 kb on - strand at 3213.157 kb on - strand at 3213.159 kb on + strand at 3213.159 kb on + strand at 3213.160 kb on - strand at 3213.160 kb on - strand at 3213.160 kb on - strand at 3213.160 kb on - strand at 3213.214 kb on - strand at 3213.219 kb on + strand at 3213.227 kb on + strand at 3213.321 kb on + strand, within mzrA at 3213.322 kb on - strand, within mzrA at 3213.322 kb on - strand, within mzrA at 3213.333 kb on + strand, within mzrA at 3213.334 kb on - strand, within mzrA at 3213.334 kb on - strand, within mzrA at 3213.334 kb on - strand, within mzrA at 3213.356 kb on + strand, within mzrA at 3213.356 kb on + strand, within mzrA at 3213.356 kb on + strand, within mzrA at 3213.357 kb on - strand, within mzrA at 3213.357 kb on - strand, within mzrA at 3213.357 kb on - strand, within mzrA at 3213.357 kb on - strand, within mzrA at 3213.357 kb on - strand, within mzrA at 3213.423 kb on + strand, within mzrA at 3213.424 kb on - strand, within mzrA at 3213.424 kb on - strand, within mzrA at 3213.427 kb on + strand, within mzrA at 3213.427 kb on + strand, within mzrA at 3213.453 kb on + strand, within mzrA at 3213.453 kb on + strand, within mzrA at 3213.454 kb on - strand, within mzrA at 3213.550 kb on - strand, within mzrA at 3213.550 kb on - strand, within mzrA at 3213.550 kb on - strand, within mzrA at 3213.605 kb on - strand, within mzrA at 3213.605 kb on - strand, within mzrA at 3213.626 kb on - strand at 3213.650 kb on - strand at 3213.695 kb on - strand at 3213.695 kb on - strand at 3213.778 kb on + strand, within mzrA at 3213.806 kb on + strand, within mzrA at 3213.806 kb on + strand, within mzrA at 3213.807 kb on - strand, within mzrA at 3213.807 kb on - strand, within mzrA at 3213.931 kb on - strand, within mzrA at 3213.943 kb on + strand, within mzrA at 3213.943 kb on + strand, within mzrA at 3213.944 kb on - strand, within mzrA at 3213.995 kb on + strand, within mzrA at 3213.996 kb on - strand, within mzrA at 3213.996 kb on - strand, within mzrA at 3214.015 kb on + strand, within mzrA at 3214.016 kb on - strand, within mzrA at 3214.064 kb on + strand, within mzrA at 3214.064 kb on + strand, within mzrA at 3214.065 kb on - strand, within mzrA at 3214.065 kb on - strand, within mzrA at 3214.065 kb on - strand, within mzrA at 3214.065 kb on - strand, within mzrA at 3214.065 kb on - strand, within mzrA at 3214.222 kb on + strand, within mzrA at 3214.238 kb on + strand, within mzrA at 3214.238 kb on + strand, within mzrA at 3214.238 kb on + strand, within mzrA at 3214.328 kb on + strand at 3214.329 kb on - strand at 3214.386 kb on + strand, within yqiM at 3214.387 kb on - strand, within yqiM at 3214.400 kb on + strand, within yqiM at 3214.418 kb on + strand at 3214.419 kb on - strand at 3214.419 kb on - strand at 3214.419 kb on - strand at 3214.419 kb on - strand at 3214.438 kb on + strand at 3214.438 kb on + strand at 3214.438 kb on + strand at 3214.439 kb on - strand at 3214.439 kb on - strand at 3214.439 kb on - strand at 3214.460 kb on + strand at 3214.461 kb on - strand at 3214.461 kb on - strand at 3214.481 kb on - strand at 3214.481 kb on - strand at 3214.497 kb on + strand at 3214.497 kb on + strand at 3214.497 kb on + strand at 3214.504 kb on - strand at 3214.504 kb on - strand at 3214.504 kb on - strand at 3214.535 kb on + strand at 3214.535 kb on + strand at 3214.535 kb on + strand at 3214.535 kb on + strand at 3214.535 kb on + strand at 3214.590 kb on + strand at 3214.591 kb on - strand at 3214.610 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 3,212,279 - yqjE NIAGMN_16245 0.67 +1.7 3,212,414 - -0.5 3,212,417 + -2.8 3,212,417 + -1.0 3,212,447 - yqjD NIAGMN_16250 0.10 -0.1 3,212,498 + yqjD NIAGMN_16250 0.27 +0.2 3,212,498 + yqjD NIAGMN_16250 0.27 -1.8 3,212,499 - yqjD NIAGMN_16250 0.27 +0.4 3,212,499 - yqjD NIAGMN_16250 0.27 -0.1 3,212,499 - yqjD NIAGMN_16250 0.27 -0.8 3,212,499 - yqjD NIAGMN_16250 0.27 -1.4 3,212,499 - yqjD NIAGMN_16250 0.27 +0.9 3,212,499 - yqjD NIAGMN_16250 0.27 +2.1 3,212,601 + yqjD NIAGMN_16250 0.60 -2.0 3,212,611 - yqjD NIAGMN_16250 0.64 +0.9 3,212,611 - yqjD NIAGMN_16250 0.64 -0.5 3,212,611 - yqjD NIAGMN_16250 0.64 -0.5 3,212,646 + yqjD NIAGMN_16250 0.75 -0.7 3,212,646 + yqjD NIAGMN_16250 0.75 -0.8 3,212,646 + yqjD NIAGMN_16250 0.75 -0.4 3,212,646 + yqjD NIAGMN_16250 0.75 +1.4 3,212,647 - yqjD NIAGMN_16250 0.75 +1.7 3,212,647 - yqjD NIAGMN_16250 0.75 +1.5 3,212,647 - yqjD NIAGMN_16250 0.75 -1.0 3,212,647 - yqjD NIAGMN_16250 0.75 -0.1 3,212,647 - yqjD NIAGMN_16250 0.75 -0.6 3,212,647 - yqjD NIAGMN_16250 0.75 +0.8 3,212,647 - yqjD NIAGMN_16250 0.75 -0.2 3,212,647 - yqjD NIAGMN_16250 0.75 -1.3 3,212,647 - yqjD NIAGMN_16250 0.75 +0.7 3,212,647 - yqjD NIAGMN_16250 0.75 +0.2 3,212,647 - yqjD NIAGMN_16250 0.75 -2.6 3,212,665 - yqjD NIAGMN_16250 0.81 +0.2 3,212,722 - -0.0 3,212,722 - +0.2 3,212,739 + -1.2 3,212,739 + -0.7 3,212,740 - -2.0 3,212,740 - +0.7 3,212,740 - -0.7 3,212,740 - +0.0 3,212,744 - +0.0 3,212,751 - -0.9 3,212,751 - -0.4 3,212,751 - +0.4 3,212,751 - +1.1 3,212,751 - -0.9 3,212,760 + +1.2 3,212,761 - -0.4 3,212,761 - -0.6 3,212,764 - +0.3 3,212,834 - yqjC NIAGMN_16255 0.20 +0.0 3,212,938 + yqjC NIAGMN_16255 0.49 -0.1 3,212,989 + yqjC NIAGMN_16255 0.62 -0.2 3,212,990 - yqjC NIAGMN_16255 0.63 -2.9 3,213,018 + yqjC NIAGMN_16255 0.70 +0.3 3,213,018 + yqjC NIAGMN_16255 0.70 +1.0 3,213,018 + yqjC NIAGMN_16255 0.70 +1.7 3,213,018 + yqjC NIAGMN_16255 0.70 -1.0 3,213,018 + yqjC NIAGMN_16255 0.70 +0.4 3,213,019 - yqjC NIAGMN_16255 0.70 -0.1 3,213,019 - yqjC NIAGMN_16255 0.70 +0.8 3,213,019 - yqjC NIAGMN_16255 0.70 -0.8 3,213,019 - yqjC NIAGMN_16255 0.70 +0.1 3,213,064 + yqjC NIAGMN_16255 0.83 -0.8 3,213,064 + yqjC NIAGMN_16255 0.83 -0.5 3,213,065 - yqjC NIAGMN_16255 0.83 +1.5 3,213,072 + yqjC NIAGMN_16255 0.85 -0.5 3,213,072 + yqjC NIAGMN_16255 0.85 +0.4 3,213,072 + yqjC NIAGMN_16255 0.85 +0.1 3,213,072 + yqjC NIAGMN_16255 0.85 -0.1 3,213,073 - yqjC NIAGMN_16255 0.85 +1.1 3,213,073 - yqjC NIAGMN_16255 0.85 -0.2 3,213,073 - yqjC NIAGMN_16255 0.85 -1.2 3,213,076 + yqjC NIAGMN_16255 0.86 -0.9 3,213,077 - yqjC NIAGMN_16255 0.86 +0.7 3,213,085 + yqjC NIAGMN_16255 0.88 -0.3 3,213,086 - yqjC NIAGMN_16255 0.89 -0.5 3,213,107 + +1.3 3,213,108 - -0.5 3,213,108 - +0.4 3,213,120 + -0.3 3,213,121 - +1.4 3,213,156 + -0.8 3,213,156 + -0.5 3,213,156 + +0.2 3,213,156 + +0.9 3,213,156 + -0.5 3,213,157 - +0.4 3,213,157 - +0.4 3,213,159 + -1.2 3,213,159 + +0.3 3,213,160 - +0.5 3,213,160 - -1.0 3,213,160 - -0.9 3,213,160 - -3.2 3,213,214 - +0.6 3,213,219 + +0.1 3,213,227 + +0.2 3,213,321 + mzrA NIAGMN_16260 0.12 +1.4 3,213,322 - mzrA NIAGMN_16260 0.12 -1.5 3,213,322 - mzrA NIAGMN_16260 0.12 +0.0 3,213,333 + mzrA NIAGMN_16260 0.15 +0.6 3,213,334 - mzrA NIAGMN_16260 0.16 +0.2 3,213,334 - mzrA NIAGMN_16260 0.16 +0.1 3,213,334 - mzrA NIAGMN_16260 0.16 -2.0 3,213,356 + mzrA NIAGMN_16260 0.21 +0.3 3,213,356 + mzrA NIAGMN_16260 0.21 +0.7 3,213,356 + mzrA NIAGMN_16260 0.21 +0.5 3,213,357 - mzrA NIAGMN_16260 0.22 -0.2 3,213,357 - mzrA NIAGMN_16260 0.22 -0.3 3,213,357 - mzrA NIAGMN_16260 0.22 +0.2 3,213,357 - mzrA NIAGMN_16260 0.22 -1.1 3,213,357 - mzrA NIAGMN_16260 0.22 -1.4 3,213,423 + mzrA NIAGMN_16260 0.39 +0.1 3,213,424 - mzrA NIAGMN_16260 0.39 +0.7 3,213,424 - mzrA NIAGMN_16260 0.39 +1.9 3,213,427 + mzrA NIAGMN_16260 0.40 -1.1 3,213,427 + mzrA NIAGMN_16260 0.40 -0.5 3,213,453 + mzrA NIAGMN_16260 0.47 +1.9 3,213,453 + mzrA NIAGMN_16260 0.47 +0.3 3,213,454 - mzrA NIAGMN_16260 0.47 -0.0 3,213,550 - mzrA NIAGMN_16260 0.72 +0.6 3,213,550 - mzrA NIAGMN_16260 0.72 +0.4 3,213,550 - mzrA NIAGMN_16260 0.72 +0.2 3,213,605 - mzrA NIAGMN_16260 0.86 +0.2 3,213,605 - mzrA NIAGMN_16260 0.86 +0.5 3,213,626 - +0.5 3,213,650 - +0.5 3,213,695 - +0.1 3,213,695 - -0.0 3,213,778 + mzrA NIAGMN_16265 0.18 +0.9 3,213,806 + mzrA NIAGMN_16265 0.22 -0.9 3,213,806 + mzrA NIAGMN_16265 0.22 -1.2 3,213,807 - mzrA NIAGMN_16265 0.22 +0.9 3,213,807 - mzrA NIAGMN_16265 0.22 -0.6 3,213,931 - mzrA NIAGMN_16265 0.41 -1.4 3,213,943 + mzrA NIAGMN_16265 0.43 +1.9 3,213,943 + mzrA NIAGMN_16265 0.43 +1.5 3,213,944 - mzrA NIAGMN_16265 0.43 -0.3 3,213,995 + mzrA NIAGMN_16265 0.50 -1.1 3,213,996 - mzrA NIAGMN_16265 0.51 +0.8 3,213,996 - mzrA NIAGMN_16265 0.51 +1.6 3,214,015 + mzrA NIAGMN_16265 0.53 +0.8 3,214,016 - mzrA NIAGMN_16265 0.54 -0.6 3,214,064 + mzrA NIAGMN_16265 0.61 +1.1 3,214,064 + mzrA NIAGMN_16265 0.61 -0.7 3,214,065 - mzrA NIAGMN_16265 0.61 +0.1 3,214,065 - mzrA NIAGMN_16265 0.61 +1.7 3,214,065 - mzrA NIAGMN_16265 0.61 +1.5 3,214,065 - mzrA NIAGMN_16265 0.61 +0.5 3,214,065 - mzrA NIAGMN_16265 0.61 +0.3 3,214,222 + mzrA NIAGMN_16265 0.85 +1.2 3,214,238 + mzrA NIAGMN_16265 0.87 +0.3 3,214,238 + mzrA NIAGMN_16265 0.87 -2.0 3,214,238 + mzrA NIAGMN_16265 0.87 +0.6 3,214,328 + -0.8 3,214,329 - -2.5 3,214,386 + yqiM NIAGMN_16270 0.53 -0.3 3,214,387 - yqiM NIAGMN_16270 0.54 +0.4 3,214,400 + yqiM NIAGMN_16270 0.71 +1.1 3,214,418 + +0.2 3,214,419 - -0.0 3,214,419 - -0.5 3,214,419 - -2.1 3,214,419 - +0.2 3,214,438 + -3.0 3,214,438 + -0.3 3,214,438 + +0.6 3,214,439 - +0.3 3,214,439 - +0.3 3,214,439 - -0.5 3,214,460 + +0.0 3,214,461 - +0.3 3,214,461 - -0.0 3,214,481 - +1.0 3,214,481 - -0.4 3,214,497 + +0.1 3,214,497 + +2.0 3,214,497 + -0.1 3,214,504 - +0.9 3,214,504 - +0.8 3,214,504 - +0.6 3,214,535 + +0.1 3,214,535 + +1.1 3,214,535 + -0.3 3,214,535 + +0.5 3,214,535 + +0.3 3,214,590 + -0.2 3,214,591 - -0.8 3,214,610 - +0.4
Or see this region's nucleotide sequence