Strain Fitness in Escherichia coli ECRC102 around NIAGMN_15290

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttrkA and rsmB are separated by 21 nucleotidesrsmB and fmt are separated by 45 nucleotides NIAGMN_15285: trkA - Trk system potassium transporter TrkA, at 3,028,823 to 3,030,199 trkA NIAGMN_15290: rsmB - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 3,030,221 to 3,031,510 rsmB NIAGMN_15295: fmt - methionyl-tRNA formyltransferase, at 3,031,556 to 3,032,503 fmt Position (kb) 3030 3031 3032Strain fitness (log2 ratio) -2 -1 0 1 2at 3030.365 kb on - strand, within rsmBat 3030.397 kb on - strand, within rsmBat 3030.492 kb on - strand, within rsmBat 3030.500 kb on - strand, within rsmBat 3030.500 kb on - strand, within rsmBat 3030.500 kb on - strand, within rsmBat 3030.500 kb on - strand, within rsmBat 3030.549 kb on - strand, within rsmBat 3030.549 kb on - strand, within rsmBat 3030.552 kb on - strand, within rsmBat 3030.552 kb on - strand, within rsmBat 3030.552 kb on - strand, within rsmBat 3030.629 kb on - strand, within rsmBat 3030.680 kb on - strand, within rsmBat 3030.722 kb on - strand, within rsmBat 3030.971 kb on - strand, within rsmBat 3031.103 kb on - strand, within rsmBat 3031.116 kb on - strand, within rsmBat 3031.495 kb on + strandat 3031.542 kb on - strandat 3031.542 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,030,365 - rsmB NIAGMN_15290 0.11 +0.8
3,030,397 - rsmB NIAGMN_15290 0.14 +0.6
3,030,492 - rsmB NIAGMN_15290 0.21 -0.5
3,030,500 - rsmB NIAGMN_15290 0.22 +1.3
3,030,500 - rsmB NIAGMN_15290 0.22 -1.5
3,030,500 - rsmB NIAGMN_15290 0.22 +1.3
3,030,500 - rsmB NIAGMN_15290 0.22 +0.1
3,030,549 - rsmB NIAGMN_15290 0.25 -0.7
3,030,549 - rsmB NIAGMN_15290 0.25 +0.1
3,030,552 - rsmB NIAGMN_15290 0.26 +2.0
3,030,552 - rsmB NIAGMN_15290 0.26 +0.2
3,030,552 - rsmB NIAGMN_15290 0.26 +0.5
3,030,629 - rsmB NIAGMN_15290 0.32 -0.4
3,030,680 - rsmB NIAGMN_15290 0.36 -0.9
3,030,722 - rsmB NIAGMN_15290 0.39 +0.1
3,030,971 - rsmB NIAGMN_15290 0.58 +1.0
3,031,103 - rsmB NIAGMN_15290 0.68 -0.4
3,031,116 - rsmB NIAGMN_15290 0.69 -2.0
3,031,495 + -1.3
3,031,542 - +0.0
3,031,542 - +0.8

Or see this region's nucleotide sequence