Strain Fitness in Escherichia coli ECRC102 around NIAGMN_14770

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_14760 and gntX are separated by 58 nucleotidesgntX and bioH are separated by 37 nucleotidesbioH and rpnA are separated by 26 nucleotides NIAGMN_14760: NIAGMN_14760 - NfuA family Fe-S biogenesis protein, at 2,943,357 to 2,943,932 _14760 NIAGMN_14765: gntX - DNA utilization protein GntX, at 2,943,991 to 2,944,674 gntX NIAGMN_14770: bioH - pimeloyl-ACP methyl ester esterase BioH, at 2,944,712 to 2,945,482 bioH NIAGMN_14775: rpnA - recombination-promoting nuclease RpnA, at 2,945,509 to 2,946,387 rpnA Position (kb) 2944 2945 2946Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2943.718 kb on + strand, within NIAGMN_14760at 2943.718 kb on + strand, within NIAGMN_14760at 2943.729 kb on + strand, within NIAGMN_14760at 2943.805 kb on + strand, within NIAGMN_14760at 2943.923 kb on + strandat 2943.924 kb on - strandat 2943.932 kb on + strandat 2943.933 kb on - strandat 2943.933 kb on - strandat 2943.935 kb on + strandat 2943.935 kb on + strandat 2943.936 kb on - strandat 2943.936 kb on - strandat 2943.936 kb on - strandat 2943.936 kb on - strandat 2943.947 kb on - strandat 2943.968 kb on - strandat 2943.992 kb on + strandat 2943.993 kb on - strandat 2943.993 kb on - strandat 2944.043 kb on - strandat 2944.071 kb on + strand, within gntXat 2944.071 kb on + strand, within gntXat 2944.108 kb on - strand, within gntXat 2944.108 kb on - strand, within gntXat 2944.206 kb on + strand, within gntXat 2944.206 kb on + strand, within gntXat 2944.206 kb on + strand, within gntXat 2944.206 kb on + strand, within gntXat 2944.207 kb on - strand, within gntXat 2944.281 kb on + strand, within gntXat 2944.282 kb on - strand, within gntXat 2944.282 kb on - strand, within gntXat 2944.329 kb on + strand, within gntXat 2944.329 kb on + strand, within gntXat 2944.329 kb on + strand, within gntXat 2944.330 kb on - strand, within gntXat 2944.369 kb on + strand, within gntXat 2944.370 kb on - strand, within gntXat 2944.370 kb on - strand, within gntXat 2944.370 kb on - strand, within gntXat 2944.381 kb on + strand, within gntXat 2944.382 kb on - strand, within gntXat 2944.384 kb on + strand, within gntXat 2944.384 kb on + strand, within gntXat 2944.431 kb on + strand, within gntXat 2944.432 kb on - strand, within gntXat 2944.467 kb on - strand, within gntXat 2944.575 kb on + strand, within gntXat 2944.575 kb on + strand, within gntXat 2944.576 kb on - strand, within gntXat 2944.624 kb on + strandat 2944.624 kb on + strandat 2944.624 kb on + strandat 2944.624 kb on + strandat 2944.625 kb on - strandat 2944.625 kb on - strandat 2944.625 kb on - strandat 2944.625 kb on - strandat 2944.654 kb on + strandat 2944.674 kb on + strandat 2944.674 kb on + strandat 2944.674 kb on + strandat 2944.674 kb on + strandat 2944.674 kb on + strandat 2944.674 kb on + strandat 2944.675 kb on - strandat 2944.675 kb on - strandat 2944.675 kb on - strandat 2944.675 kb on - strandat 2944.675 kb on - strandat 2944.675 kb on - strandat 2944.675 kb on - strandat 2944.688 kb on + strandat 2944.688 kb on + strandat 2944.689 kb on - strandat 2944.706 kb on + strandat 2944.707 kb on - strandat 2944.717 kb on + strandat 2944.717 kb on + strandat 2944.717 kb on + strandat 2944.717 kb on + strandat 2944.718 kb on - strandat 2944.820 kb on - strand, within bioHat 2944.820 kb on - strand, within bioHat 2945.070 kb on + strand, within bioHat 2945.071 kb on - strand, within bioHat 2945.125 kb on + strand, within bioHat 2945.149 kb on - strand, within bioHat 2945.318 kb on + strand, within bioHat 2945.318 kb on + strand, within bioHat 2945.318 kb on + strand, within bioHat 2945.318 kb on + strand, within bioHat 2945.319 kb on - strand, within bioHat 2945.319 kb on - strand, within bioHat 2945.319 kb on - strand, within bioHat 2945.319 kb on - strand, within bioHat 2945.319 kb on - strand, within bioHat 2945.319 kb on - strand, within bioHat 2945.368 kb on + strand, within bioHat 2945.393 kb on + strand, within bioHat 2945.393 kb on + strand, within bioHat 2945.393 kb on + strand, within bioHat 2945.393 kb on + strand, within bioHat 2945.393 kb on + strand, within bioHat 2945.393 kb on + strand, within bioHat 2945.393 kb on + strand, within bioHat 2945.393 kb on + strand, within bioHat 2945.393 kb on + strand, within bioHat 2945.394 kb on - strand, within bioHat 2945.394 kb on - strand, within bioHat 2945.394 kb on - strand, within bioHat 2945.394 kb on - strand, within bioHat 2945.394 kb on - strand, within bioHat 2945.394 kb on - strand, within bioHat 2945.425 kb on + strandat 2945.425 kb on + strandat 2945.480 kb on + strandat 2945.481 kb on - strandat 2945.551 kb on - strandat 2945.593 kb on + strandat 2945.594 kb on - strandat 2945.594 kb on - strandat 2945.603 kb on - strand, within rpnAat 2945.604 kb on + strand, within rpnAat 2945.605 kb on - strand, within rpnAat 2945.605 kb on - strand, within rpnAat 2945.605 kb on - strand, within rpnAat 2945.605 kb on - strand, within rpnAat 2945.605 kb on - strand, within rpnAat 2945.605 kb on - strand, within rpnAat 2945.652 kb on + strand, within rpnAat 2945.653 kb on - strand, within rpnAat 2945.740 kb on + strand, within rpnAat 2945.740 kb on + strand, within rpnAat 2945.740 kb on + strand, within rpnAat 2945.741 kb on - strand, within rpnAat 2945.741 kb on - strand, within rpnAat 2945.741 kb on - strand, within rpnAat 2945.744 kb on + strand, within rpnAat 2945.744 kb on + strand, within rpnAat 2945.745 kb on - strand, within rpnAat 2945.745 kb on - strand, within rpnAat 2945.748 kb on + strand, within rpnAat 2945.749 kb on - strand, within rpnAat 2945.749 kb on - strand, within rpnAat 2945.788 kb on - strand, within rpnAat 2945.791 kb on + strand, within rpnAat 2945.791 kb on + strand, within rpnAat 2945.791 kb on + strand, within rpnAat 2945.791 kb on + strand, within rpnAat 2945.791 kb on + strand, within rpnAat 2945.791 kb on + strand, within rpnAat 2945.792 kb on - strand, within rpnAat 2945.792 kb on - strand, within rpnAat 2945.792 kb on - strand, within rpnAat 2945.794 kb on + strand, within rpnAat 2945.794 kb on + strand, within rpnAat 2945.794 kb on + strand, within rpnAat 2945.794 kb on + strand, within rpnAat 2945.795 kb on - strand, within rpnAat 2945.795 kb on - strand, within rpnAat 2945.795 kb on - strand, within rpnAat 2945.795 kb on - strand, within rpnAat 2945.813 kb on - strand, within rpnAat 2945.841 kb on + strand, within rpnAat 2945.842 kb on - strand, within rpnAat 2945.842 kb on - strand, within rpnAat 2945.842 kb on - strand, within rpnAat 2945.855 kb on - strand, within rpnAat 2945.855 kb on - strand, within rpnAat 2945.855 kb on - strand, within rpnAat 2945.913 kb on + strand, within rpnAat 2945.939 kb on + strand, within rpnAat 2945.939 kb on + strand, within rpnAat 2945.939 kb on + strand, within rpnAat 2945.940 kb on - strand, within rpnAat 2945.940 kb on - strand, within rpnAat 2945.940 kb on - strand, within rpnAat 2945.940 kb on - strand, within rpnAat 2945.994 kb on - strand, within rpnAat 2946.020 kb on + strand, within rpnAat 2946.021 kb on - strand, within rpnAat 2946.021 kb on - strand, within rpnAat 2946.090 kb on + strand, within rpnAat 2946.155 kb on + strand, within rpnAat 2946.155 kb on + strand, within rpnAat 2946.155 kb on + strand, within rpnAat 2946.155 kb on + strand, within rpnAat 2946.155 kb on + strand, within rpnAat 2946.155 kb on + strand, within rpnAat 2946.155 kb on + strand, within rpnAat 2946.155 kb on + strand, within rpnAat 2946.155 kb on + strand, within rpnAat 2946.155 kb on + strand, within rpnAat 2946.156 kb on - strand, within rpnAat 2946.156 kb on - strand, within rpnAat 2946.156 kb on - strand, within rpnAat 2946.161 kb on + strand, within rpnAat 2946.161 kb on + strand, within rpnAat 2946.161 kb on + strand, within rpnAat 2946.161 kb on + strand, within rpnAat 2946.161 kb on + strand, within rpnAat 2946.161 kb on + strand, within rpnAat 2946.161 kb on + strand, within rpnAat 2946.161 kb on + strand, within rpnAat 2946.162 kb on - strand, within rpnAat 2946.162 kb on - strand, within rpnAat 2946.162 kb on - strand, within rpnAat 2946.231 kb on + strand, within rpnAat 2946.292 kb on + strand, within rpnAat 2946.292 kb on + strand, within rpnAat 2946.292 kb on + strand, within rpnAat 2946.424 kb on + strandat 2946.424 kb on + strandat 2946.450 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,943,718 + NIAGMN_14760 0.63 -1.9
2,943,718 + NIAGMN_14760 0.63 -2.4
2,943,729 + NIAGMN_14760 0.65 +0.4
2,943,805 + NIAGMN_14760 0.78 -0.1
2,943,923 + -0.1
2,943,924 - -0.7
2,943,932 + -2.3
2,943,933 - -1.8
2,943,933 - -2.6
2,943,935 + +1.4
2,943,935 + +1.9
2,943,936 - -2.8
2,943,936 - +0.1
2,943,936 - -0.4
2,943,936 - -0.4
2,943,947 - +0.0
2,943,968 - +0.1
2,943,992 + +2.1
2,943,993 - -1.5
2,943,993 - -2.6
2,944,043 - +0.9
2,944,071 + gntX NIAGMN_14765 0.12 +1.2
2,944,071 + gntX NIAGMN_14765 0.12 -0.3
2,944,108 - gntX NIAGMN_14765 0.17 +0.3
2,944,108 - gntX NIAGMN_14765 0.17 -0.8
2,944,206 + gntX NIAGMN_14765 0.31 -0.5
2,944,206 + gntX NIAGMN_14765 0.31 -0.6
2,944,206 + gntX NIAGMN_14765 0.31 -0.5
2,944,206 + gntX NIAGMN_14765 0.31 +0.8
2,944,207 - gntX NIAGMN_14765 0.32 +0.5
2,944,281 + gntX NIAGMN_14765 0.42 +0.2
2,944,282 - gntX NIAGMN_14765 0.43 +0.1
2,944,282 - gntX NIAGMN_14765 0.43 -0.3
2,944,329 + gntX NIAGMN_14765 0.49 -0.0
2,944,329 + gntX NIAGMN_14765 0.49 +0.2
2,944,329 + gntX NIAGMN_14765 0.49 +0.3
2,944,330 - gntX NIAGMN_14765 0.50 +0.0
2,944,369 + gntX NIAGMN_14765 0.55 -1.0
2,944,370 - gntX NIAGMN_14765 0.55 -0.3
2,944,370 - gntX NIAGMN_14765 0.55 +0.3
2,944,370 - gntX NIAGMN_14765 0.55 +0.6
2,944,381 + gntX NIAGMN_14765 0.57 -0.4
2,944,382 - gntX NIAGMN_14765 0.57 +0.1
2,944,384 + gntX NIAGMN_14765 0.57 +0.0
2,944,384 + gntX NIAGMN_14765 0.57 +0.2
2,944,431 + gntX NIAGMN_14765 0.64 -2.8
2,944,432 - gntX NIAGMN_14765 0.64 -1.2
2,944,467 - gntX NIAGMN_14765 0.70 -1.0
2,944,575 + gntX NIAGMN_14765 0.85 +0.1
2,944,575 + gntX NIAGMN_14765 0.85 +0.1
2,944,576 - gntX NIAGMN_14765 0.86 +0.1
2,944,624 + +0.4
2,944,624 + +0.0
2,944,624 + +0.9
2,944,624 + +1.6
2,944,625 - +0.5
2,944,625 - +0.0
2,944,625 - -1.0
2,944,625 - -3.1
2,944,654 + +0.4
2,944,674 + +0.0
2,944,674 + -1.3
2,944,674 + +0.0
2,944,674 + +1.4
2,944,674 + -1.8
2,944,674 + -1.8
2,944,675 - +0.5
2,944,675 - -0.8
2,944,675 - -0.2
2,944,675 - -0.4
2,944,675 - +0.1
2,944,675 - -0.0
2,944,675 - -0.5
2,944,688 + +0.0
2,944,688 + +0.0
2,944,689 - +0.4
2,944,706 + +0.1
2,944,707 - -0.2
2,944,717 + +0.2
2,944,717 + -1.0
2,944,717 + -1.0
2,944,717 + -1.0
2,944,718 - -0.3
2,944,820 - bioH NIAGMN_14770 0.14 -0.4
2,944,820 - bioH NIAGMN_14770 0.14 -3.3
2,945,070 + bioH NIAGMN_14770 0.46 -0.5
2,945,071 - bioH NIAGMN_14770 0.47 +1.5
2,945,125 + bioH NIAGMN_14770 0.54 -1.3
2,945,149 - bioH NIAGMN_14770 0.57 -0.7
2,945,318 + bioH NIAGMN_14770 0.79 -1.8
2,945,318 + bioH NIAGMN_14770 0.79 +0.0
2,945,318 + bioH NIAGMN_14770 0.79 -0.4
2,945,318 + bioH NIAGMN_14770 0.79 +0.0
2,945,319 - bioH NIAGMN_14770 0.79 +0.1
2,945,319 - bioH NIAGMN_14770 0.79 +0.8
2,945,319 - bioH NIAGMN_14770 0.79 -2.8
2,945,319 - bioH NIAGMN_14770 0.79 -0.0
2,945,319 - bioH NIAGMN_14770 0.79 -2.1
2,945,319 - bioH NIAGMN_14770 0.79 -0.6
2,945,368 + bioH NIAGMN_14770 0.85 +0.1
2,945,393 + bioH NIAGMN_14770 0.88 -0.6
2,945,393 + bioH NIAGMN_14770 0.88 -1.1
2,945,393 + bioH NIAGMN_14770 0.88 -0.7
2,945,393 + bioH NIAGMN_14770 0.88 -0.1
2,945,393 + bioH NIAGMN_14770 0.88 -0.8
2,945,393 + bioH NIAGMN_14770 0.88 -0.5
2,945,393 + bioH NIAGMN_14770 0.88 +0.2
2,945,393 + bioH NIAGMN_14770 0.88 -2.3
2,945,393 + bioH NIAGMN_14770 0.88 -0.5
2,945,394 - bioH NIAGMN_14770 0.88 +0.7
2,945,394 - bioH NIAGMN_14770 0.88 -2.4
2,945,394 - bioH NIAGMN_14770 0.88 -0.9
2,945,394 - bioH NIAGMN_14770 0.88 -0.4
2,945,394 - bioH NIAGMN_14770 0.88 -0.4
2,945,394 - bioH NIAGMN_14770 0.88 -0.5
2,945,425 + +0.8
2,945,425 + -1.1
2,945,480 + -0.0
2,945,481 - -0.5
2,945,551 - +0.5
2,945,593 + +0.4
2,945,594 - +0.5
2,945,594 - -1.1
2,945,603 - rpnA NIAGMN_14775 0.11 +0.0
2,945,604 + rpnA NIAGMN_14775 0.11 +0.4
2,945,605 - rpnA NIAGMN_14775 0.11 +0.3
2,945,605 - rpnA NIAGMN_14775 0.11 -0.9
2,945,605 - rpnA NIAGMN_14775 0.11 +1.1
2,945,605 - rpnA NIAGMN_14775 0.11 +0.6
2,945,605 - rpnA NIAGMN_14775 0.11 +0.0
2,945,605 - rpnA NIAGMN_14775 0.11 -0.9
2,945,652 + rpnA NIAGMN_14775 0.16 +0.3
2,945,653 - rpnA NIAGMN_14775 0.16 +0.1
2,945,740 + rpnA NIAGMN_14775 0.26 +2.3
2,945,740 + rpnA NIAGMN_14775 0.26 +0.8
2,945,740 + rpnA NIAGMN_14775 0.26 +0.3
2,945,741 - rpnA NIAGMN_14775 0.26 -0.9
2,945,741 - rpnA NIAGMN_14775 0.26 +1.0
2,945,741 - rpnA NIAGMN_14775 0.26 -0.7
2,945,744 + rpnA NIAGMN_14775 0.27 -1.4
2,945,744 + rpnA NIAGMN_14775 0.27 +0.2
2,945,745 - rpnA NIAGMN_14775 0.27 -0.2
2,945,745 - rpnA NIAGMN_14775 0.27 +0.5
2,945,748 + rpnA NIAGMN_14775 0.27 +0.0
2,945,749 - rpnA NIAGMN_14775 0.27 +0.1
2,945,749 - rpnA NIAGMN_14775 0.27 +0.7
2,945,788 - rpnA NIAGMN_14775 0.32 -1.1
2,945,791 + rpnA NIAGMN_14775 0.32 +0.2
2,945,791 + rpnA NIAGMN_14775 0.32 +0.3
2,945,791 + rpnA NIAGMN_14775 0.32 +0.5
2,945,791 + rpnA NIAGMN_14775 0.32 +0.6
2,945,791 + rpnA NIAGMN_14775 0.32 -2.1
2,945,791 + rpnA NIAGMN_14775 0.32 +0.6
2,945,792 - rpnA NIAGMN_14775 0.32 -0.6
2,945,792 - rpnA NIAGMN_14775 0.32 +0.6
2,945,792 - rpnA NIAGMN_14775 0.32 +0.2
2,945,794 + rpnA NIAGMN_14775 0.32 -0.3
2,945,794 + rpnA NIAGMN_14775 0.32 +1.4
2,945,794 + rpnA NIAGMN_14775 0.32 -2.0
2,945,794 + rpnA NIAGMN_14775 0.32 +0.6
2,945,795 - rpnA NIAGMN_14775 0.33 -1.9
2,945,795 - rpnA NIAGMN_14775 0.33 -0.1
2,945,795 - rpnA NIAGMN_14775 0.33 +1.0
2,945,795 - rpnA NIAGMN_14775 0.33 +0.3
2,945,813 - rpnA NIAGMN_14775 0.35 -0.6
2,945,841 + rpnA NIAGMN_14775 0.38 -3.8
2,945,842 - rpnA NIAGMN_14775 0.38 +1.4
2,945,842 - rpnA NIAGMN_14775 0.38 +0.3
2,945,842 - rpnA NIAGMN_14775 0.38 +0.0
2,945,855 - rpnA NIAGMN_14775 0.39 +0.3
2,945,855 - rpnA NIAGMN_14775 0.39 +0.2
2,945,855 - rpnA NIAGMN_14775 0.39 +0.0
2,945,913 + rpnA NIAGMN_14775 0.46 -0.0
2,945,939 + rpnA NIAGMN_14775 0.49 -0.9
2,945,939 + rpnA NIAGMN_14775 0.49 -0.5
2,945,939 + rpnA NIAGMN_14775 0.49 +0.1
2,945,940 - rpnA NIAGMN_14775 0.49 -0.4
2,945,940 - rpnA NIAGMN_14775 0.49 +0.0
2,945,940 - rpnA NIAGMN_14775 0.49 -0.4
2,945,940 - rpnA NIAGMN_14775 0.49 -1.6
2,945,994 - rpnA NIAGMN_14775 0.55 +0.8
2,946,020 + rpnA NIAGMN_14775 0.58 -1.4
2,946,021 - rpnA NIAGMN_14775 0.58 -1.7
2,946,021 - rpnA NIAGMN_14775 0.58 +0.7
2,946,090 + rpnA NIAGMN_14775 0.66 -1.0
2,946,155 + rpnA NIAGMN_14775 0.73 +0.5
2,946,155 + rpnA NIAGMN_14775 0.73 +0.1
2,946,155 + rpnA NIAGMN_14775 0.73 -1.8
2,946,155 + rpnA NIAGMN_14775 0.73 +0.2
2,946,155 + rpnA NIAGMN_14775 0.73 +0.5
2,946,155 + rpnA NIAGMN_14775 0.73 +0.4
2,946,155 + rpnA NIAGMN_14775 0.73 +0.2
2,946,155 + rpnA NIAGMN_14775 0.73 -0.5
2,946,155 + rpnA NIAGMN_14775 0.73 +0.5
2,946,155 + rpnA NIAGMN_14775 0.73 -0.9
2,946,156 - rpnA NIAGMN_14775 0.74 -0.2
2,946,156 - rpnA NIAGMN_14775 0.74 +0.4
2,946,156 - rpnA NIAGMN_14775 0.74 -0.0
2,946,161 + rpnA NIAGMN_14775 0.74 -0.2
2,946,161 + rpnA NIAGMN_14775 0.74 +0.3
2,946,161 + rpnA NIAGMN_14775 0.74 -0.2
2,946,161 + rpnA NIAGMN_14775 0.74 -1.3
2,946,161 + rpnA NIAGMN_14775 0.74 -1.0
2,946,161 + rpnA NIAGMN_14775 0.74 +0.4
2,946,161 + rpnA NIAGMN_14775 0.74 +0.5
2,946,161 + rpnA NIAGMN_14775 0.74 +1.0
2,946,162 - rpnA NIAGMN_14775 0.74 +2.7
2,946,162 - rpnA NIAGMN_14775 0.74 +0.0
2,946,162 - rpnA NIAGMN_14775 0.74 -0.6
2,946,231 + rpnA NIAGMN_14775 0.82 -0.2
2,946,292 + rpnA NIAGMN_14775 0.89 -0.0
2,946,292 + rpnA NIAGMN_14775 0.89 -0.1
2,946,292 + rpnA NIAGMN_14775 0.89 -0.6
2,946,424 + -0.3
2,946,424 + +0.2
2,946,450 - +0.5

Or see this region's nucleotide sequence