Strain Fitness in Escherichia coli ECRC102 around NIAGMN_14360

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_14355 and NIAGMN_14360 overlap by 32 nucleotidesNIAGMN_14360 and fadM overlap by 4 nucleotidesfadM and NIAGMN_14370 are separated by 3 nucleotides NIAGMN_14355: NIAGMN_14355 - Conserved integral membrane protein, at 2,858,330 to 2,860,648 _14355 NIAGMN_14360: NIAGMN_14360 - Outer membrane lipoprotein carrier protein LolA, at 2,860,617 to 2,861,222 _14360 NIAGMN_14365: fadM - 4-hydroxybenzoyl-CoA thioesterase, at 2,861,219 to 2,861,641 fadM NIAGMN_14370: NIAGMN_14370 - acyltransferase, at 2,861,645 to 2,863,321 _14370 Position (kb) 2860 2861 2862Strain fitness (log2 ratio) -3 -2 -1 0 1at 2859.660 kb on + strand, within NIAGMN_14355at 2859.660 kb on + strand, within NIAGMN_14355at 2859.661 kb on - strand, within NIAGMN_14355at 2859.661 kb on - strand, within NIAGMN_14355at 2859.661 kb on - strand, within NIAGMN_14355at 2859.663 kb on + strand, within NIAGMN_14355at 2859.663 kb on + strand, within NIAGMN_14355at 2859.663 kb on + strand, within NIAGMN_14355at 2859.664 kb on - strand, within NIAGMN_14355at 2859.672 kb on + strand, within NIAGMN_14355at 2859.673 kb on - strand, within NIAGMN_14355at 2859.673 kb on - strand, within NIAGMN_14355at 2859.673 kb on - strand, within NIAGMN_14355at 2859.673 kb on - strand, within NIAGMN_14355at 2859.725 kb on + strand, within NIAGMN_14355at 2859.725 kb on + strand, within NIAGMN_14355at 2859.726 kb on - strand, within NIAGMN_14355at 2859.726 kb on - strand, within NIAGMN_14355at 2859.726 kb on - strand, within NIAGMN_14355at 2859.726 kb on - strand, within NIAGMN_14355at 2859.810 kb on - strand, within NIAGMN_14355at 2859.840 kb on - strand, within NIAGMN_14355at 2859.840 kb on - strand, within NIAGMN_14355at 2859.877 kb on + strand, within NIAGMN_14355at 2859.878 kb on - strand, within NIAGMN_14355at 2859.878 kb on - strand, within NIAGMN_14355at 2859.903 kb on + strand, within NIAGMN_14355at 2859.904 kb on - strand, within NIAGMN_14355at 2859.904 kb on - strand, within NIAGMN_14355at 2859.913 kb on - strand, within NIAGMN_14355at 2859.913 kb on - strand, within NIAGMN_14355at 2859.980 kb on - strand, within NIAGMN_14355at 2860.015 kb on + strand, within NIAGMN_14355at 2860.015 kb on + strand, within NIAGMN_14355at 2860.015 kb on + strand, within NIAGMN_14355at 2860.015 kb on + strand, within NIAGMN_14355at 2860.015 kb on + strand, within NIAGMN_14355at 2860.053 kb on + strand, within NIAGMN_14355at 2860.059 kb on + strand, within NIAGMN_14355at 2860.059 kb on + strand, within NIAGMN_14355at 2860.060 kb on - strand, within NIAGMN_14355at 2860.060 kb on - strand, within NIAGMN_14355at 2860.060 kb on - strand, within NIAGMN_14355at 2860.206 kb on + strand, within NIAGMN_14355at 2860.207 kb on - strand, within NIAGMN_14355at 2860.207 kb on - strand, within NIAGMN_14355at 2860.207 kb on - strand, within NIAGMN_14355at 2860.349 kb on - strand, within NIAGMN_14355at 2860.465 kb on + strandat 2860.466 kb on - strandat 2860.466 kb on - strandat 2860.519 kb on + strandat 2860.520 kb on - strandat 2860.520 kb on - strandat 2860.520 kb on - strandat 2860.520 kb on - strandat 2860.532 kb on - strandat 2860.532 kb on - strandat 2860.532 kb on - strandat 2860.592 kb on + strandat 2860.712 kb on + strand, within NIAGMN_14360at 2860.713 kb on - strand, within NIAGMN_14360at 2860.713 kb on - strand, within NIAGMN_14360at 2860.713 kb on - strand, within NIAGMN_14360at 2860.719 kb on - strand, within NIAGMN_14360at 2860.739 kb on - strand, within NIAGMN_14360at 2860.904 kb on + strand, within NIAGMN_14360at 2860.905 kb on - strand, within NIAGMN_14360at 2860.993 kb on - strand, within NIAGMN_14360at 2860.993 kb on - strand, within NIAGMN_14360at 2860.995 kb on + strand, within NIAGMN_14360at 2860.995 kb on + strand, within NIAGMN_14360at 2860.995 kb on + strand, within NIAGMN_14360at 2860.995 kb on + strand, within NIAGMN_14360at 2860.996 kb on - strand, within NIAGMN_14360at 2860.996 kb on - strand, within NIAGMN_14360at 2860.996 kb on - strand, within NIAGMN_14360at 2860.996 kb on - strand, within NIAGMN_14360at 2860.996 kb on - strand, within NIAGMN_14360at 2861.094 kb on - strand, within NIAGMN_14360at 2861.310 kb on + strand, within fadMat 2861.437 kb on - strand, within fadMat 2861.500 kb on - strand, within fadMat 2861.500 kb on - strand, within fadMat 2861.541 kb on + strand, within fadMat 2861.550 kb on + strand, within fadMat 2861.551 kb on - strand, within fadMat 2861.578 kb on + strand, within fadMat 2861.579 kb on - strand, within fadMat 2861.646 kb on + strandat 2861.647 kb on - strandat 2861.647 kb on - strandat 2861.721 kb on + strandat 2861.721 kb on + strandat 2861.722 kb on - strandat 2861.722 kb on - strandat 2861.742 kb on + strandat 2861.824 kb on + strand, within NIAGMN_14370at 2861.893 kb on + strand, within NIAGMN_14370at 2861.930 kb on - strand, within NIAGMN_14370at 2861.930 kb on - strand, within NIAGMN_14370at 2862.110 kb on + strand, within NIAGMN_14370at 2862.110 kb on + strand, within NIAGMN_14370at 2862.110 kb on + strand, within NIAGMN_14370at 2862.111 kb on - strand, within NIAGMN_14370at 2862.111 kb on - strand, within NIAGMN_14370at 2862.154 kb on + strand, within NIAGMN_14370at 2862.155 kb on - strand, within NIAGMN_14370at 2862.165 kb on + strand, within NIAGMN_14370at 2862.166 kb on - strand, within NIAGMN_14370

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,859,660 + NIAGMN_14355 0.57 -0.1
2,859,660 + NIAGMN_14355 0.57 +0.3
2,859,661 - NIAGMN_14355 0.57 -0.8
2,859,661 - NIAGMN_14355 0.57 +0.5
2,859,661 - NIAGMN_14355 0.57 +0.1
2,859,663 + NIAGMN_14355 0.57 +0.9
2,859,663 + NIAGMN_14355 0.57 +0.3
2,859,663 + NIAGMN_14355 0.57 +0.5
2,859,664 - NIAGMN_14355 0.58 +0.7
2,859,672 + NIAGMN_14355 0.58 -2.5
2,859,673 - NIAGMN_14355 0.58 -0.3
2,859,673 - NIAGMN_14355 0.58 -0.4
2,859,673 - NIAGMN_14355 0.58 +0.7
2,859,673 - NIAGMN_14355 0.58 -1.0
2,859,725 + NIAGMN_14355 0.60 -0.2
2,859,725 + NIAGMN_14355 0.60 -0.5
2,859,726 - NIAGMN_14355 0.60 -0.4
2,859,726 - NIAGMN_14355 0.60 +0.3
2,859,726 - NIAGMN_14355 0.60 +0.2
2,859,726 - NIAGMN_14355 0.60 +0.2
2,859,810 - NIAGMN_14355 0.64 +0.5
2,859,840 - NIAGMN_14355 0.65 +0.9
2,859,840 - NIAGMN_14355 0.65 -0.9
2,859,877 + NIAGMN_14355 0.67 -1.6
2,859,878 - NIAGMN_14355 0.67 -1.2
2,859,878 - NIAGMN_14355 0.67 +0.9
2,859,903 + NIAGMN_14355 0.68 -0.3
2,859,904 - NIAGMN_14355 0.68 +0.3
2,859,904 - NIAGMN_14355 0.68 -0.4
2,859,913 - NIAGMN_14355 0.68 +1.2
2,859,913 - NIAGMN_14355 0.68 +0.1
2,859,980 - NIAGMN_14355 0.71 -0.1
2,860,015 + NIAGMN_14355 0.73 -0.8
2,860,015 + NIAGMN_14355 0.73 +0.3
2,860,015 + NIAGMN_14355 0.73 -0.3
2,860,015 + NIAGMN_14355 0.73 -0.1
2,860,015 + NIAGMN_14355 0.73 +1.5
2,860,053 + NIAGMN_14355 0.74 -0.5
2,860,059 + NIAGMN_14355 0.75 -0.5
2,860,059 + NIAGMN_14355 0.75 -0.5
2,860,060 - NIAGMN_14355 0.75 -1.0
2,860,060 - NIAGMN_14355 0.75 +0.7
2,860,060 - NIAGMN_14355 0.75 +0.6
2,860,206 + NIAGMN_14355 0.81 -0.6
2,860,207 - NIAGMN_14355 0.81 -0.5
2,860,207 - NIAGMN_14355 0.81 +1.1
2,860,207 - NIAGMN_14355 0.81 +0.6
2,860,349 - NIAGMN_14355 0.87 +0.1
2,860,465 + +0.9
2,860,466 - +0.7
2,860,466 - +0.3
2,860,519 + -1.8
2,860,520 - +0.3
2,860,520 - +1.0
2,860,520 - +0.1
2,860,520 - +1.2
2,860,532 - +0.7
2,860,532 - +0.0
2,860,532 - +0.4
2,860,592 + -3.3
2,860,712 + NIAGMN_14360 0.16 -0.2
2,860,713 - NIAGMN_14360 0.16 +0.6
2,860,713 - NIAGMN_14360 0.16 -0.5
2,860,713 - NIAGMN_14360 0.16 +1.1
2,860,719 - NIAGMN_14360 0.17 +0.6
2,860,739 - NIAGMN_14360 0.20 +0.1
2,860,904 + NIAGMN_14360 0.47 +0.6
2,860,905 - NIAGMN_14360 0.48 +1.1
2,860,993 - NIAGMN_14360 0.62 -0.3
2,860,993 - NIAGMN_14360 0.62 -0.2
2,860,995 + NIAGMN_14360 0.62 -0.2
2,860,995 + NIAGMN_14360 0.62 -0.0
2,860,995 + NIAGMN_14360 0.62 -2.0
2,860,995 + NIAGMN_14360 0.62 +0.7
2,860,996 - NIAGMN_14360 0.63 +0.4
2,860,996 - NIAGMN_14360 0.63 +0.1
2,860,996 - NIAGMN_14360 0.63 -0.4
2,860,996 - NIAGMN_14360 0.63 +0.4
2,860,996 - NIAGMN_14360 0.63 -0.6
2,861,094 - NIAGMN_14360 0.79 -0.4
2,861,310 + fadM NIAGMN_14365 0.22 +0.5
2,861,437 - fadM NIAGMN_14365 0.52 -0.9
2,861,500 - fadM NIAGMN_14365 0.66 +0.6
2,861,500 - fadM NIAGMN_14365 0.66 +1.0
2,861,541 + fadM NIAGMN_14365 0.76 +0.2
2,861,550 + fadM NIAGMN_14365 0.78 +0.7
2,861,551 - fadM NIAGMN_14365 0.78 +0.4
2,861,578 + fadM NIAGMN_14365 0.85 +0.4
2,861,579 - fadM NIAGMN_14365 0.85 +0.7
2,861,646 + -0.1
2,861,647 - +0.1
2,861,647 - +0.2
2,861,721 + -0.1
2,861,721 + -0.8
2,861,722 - -0.2
2,861,722 - -0.3
2,861,742 + +0.0
2,861,824 + NIAGMN_14370 0.11 +0.4
2,861,893 + NIAGMN_14370 0.15 -0.4
2,861,930 - NIAGMN_14370 0.17 +0.1
2,861,930 - NIAGMN_14370 0.17 -0.2
2,862,110 + NIAGMN_14370 0.28 -0.2
2,862,110 + NIAGMN_14370 0.28 +0.1
2,862,110 + NIAGMN_14370 0.28 +0.5
2,862,111 - NIAGMN_14370 0.28 -1.4
2,862,111 - NIAGMN_14370 0.28 -2.4
2,862,154 + NIAGMN_14370 0.30 +0.4
2,862,155 - NIAGMN_14370 0.30 -0.4
2,862,165 + NIAGMN_14370 0.31 -0.1
2,862,166 - NIAGMN_14370 0.31 +0.5

Or see this region's nucleotide sequence