Strain Fitness in Escherichia coli ECRC102 around NIAGMN_13820

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyhjX and lpfA1 are separated by 343 nucleotideslpfA1 and lpfB are separated by 64 nucleotideslpfB and lpfC are separated by 28 nucleotides NIAGMN_13810: yhjX - Uncharacterized MFS-type transporter YhjX, at 2,742,151 to 2,743,353 yhjX NIAGMN_13815: lpfA1 - long polar fimbria major subunit LpfA1, at 2,743,697 to 2,744,221 lpfA1 NIAGMN_13820: lpfB - long polar fimbrial biogenesis chaperone LpfB, at 2,744,286 to 2,744,972 lpfB NIAGMN_13825: lpfC - outer membrane usher protein LpfC, at 2,745,001 to 2,746,104 lpfC Position (kb) 2744 2745Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2743.302 kb on + strandat 2743.303 kb on - strandat 2743.303 kb on - strandat 2743.331 kb on + strandat 2743.348 kb on - strandat 2743.348 kb on - strandat 2743.412 kb on + strandat 2743.581 kb on - strandat 2743.669 kb on + strandat 2743.749 kb on + strandat 2743.750 kb on - strand, within lpfA1at 2743.815 kb on + strand, within lpfA1at 2743.816 kb on - strand, within lpfA1at 2743.969 kb on + strand, within lpfA1at 2743.990 kb on + strand, within lpfA1at 2743.991 kb on - strand, within lpfA1at 2744.011 kb on + strand, within lpfA1at 2744.050 kb on + strand, within lpfA1at 2744.050 kb on + strand, within lpfA1at 2744.050 kb on + strand, within lpfA1at 2744.051 kb on - strand, within lpfA1at 2744.051 kb on - strand, within lpfA1at 2744.054 kb on + strand, within lpfA1at 2744.054 kb on + strand, within lpfA1at 2744.055 kb on - strand, within lpfA1at 2744.055 kb on - strand, within lpfA1at 2744.055 kb on - strand, within lpfA1at 2744.055 kb on - strand, within lpfA1at 2744.059 kb on + strand, within lpfA1at 2744.060 kb on - strand, within lpfA1at 2744.068 kb on + strand, within lpfA1at 2744.068 kb on + strand, within lpfA1at 2744.068 kb on + strand, within lpfA1at 2744.069 kb on - strand, within lpfA1at 2744.084 kb on - strand, within lpfA1at 2744.084 kb on - strand, within lpfA1at 2744.084 kb on - strand, within lpfA1at 2744.092 kb on + strand, within lpfA1at 2744.092 kb on + strand, within lpfA1at 2744.132 kb on + strand, within lpfA1at 2744.132 kb on + strand, within lpfA1at 2744.138 kb on - strand, within lpfA1at 2744.147 kb on + strand, within lpfA1at 2744.147 kb on + strand, within lpfA1at 2744.147 kb on + strand, within lpfA1at 2744.147 kb on + strand, within lpfA1at 2744.148 kb on - strand, within lpfA1at 2744.148 kb on - strand, within lpfA1at 2744.148 kb on - strand, within lpfA1at 2744.148 kb on - strand, within lpfA1at 2744.148 kb on - strand, within lpfA1at 2744.155 kb on + strand, within lpfA1at 2744.156 kb on - strand, within lpfA1at 2744.156 kb on - strand, within lpfA1at 2744.156 kb on - strand, within lpfA1at 2744.213 kb on + strandat 2744.220 kb on - strandat 2744.360 kb on + strand, within lpfBat 2744.361 kb on - strand, within lpfBat 2744.361 kb on - strand, within lpfBat 2744.366 kb on + strand, within lpfBat 2744.366 kb on + strand, within lpfBat 2744.367 kb on - strand, within lpfBat 2744.380 kb on - strand, within lpfBat 2744.380 kb on - strand, within lpfBat 2744.391 kb on - strand, within lpfBat 2744.421 kb on - strand, within lpfBat 2744.426 kb on + strand, within lpfBat 2744.493 kb on - strand, within lpfBat 2744.537 kb on + strand, within lpfBat 2744.546 kb on + strand, within lpfBat 2744.790 kb on - strand, within lpfBat 2744.795 kb on + strand, within lpfBat 2744.866 kb on + strand, within lpfBat 2744.866 kb on + strand, within lpfBat 2744.866 kb on + strand, within lpfBat 2744.913 kb on + strandat 2744.974 kb on + strandat 2744.994 kb on + strandat 2744.994 kb on + strandat 2744.994 kb on + strandat 2745.025 kb on - strandat 2745.043 kb on - strandat 2745.149 kb on + strand, within lpfCat 2745.149 kb on + strand, within lpfCat 2745.149 kb on + strand, within lpfCat 2745.182 kb on + strand, within lpfCat 2745.193 kb on + strand, within lpfCat 2745.193 kb on + strand, within lpfCat 2745.193 kb on + strand, within lpfCat 2745.193 kb on + strand, within lpfCat 2745.194 kb on - strand, within lpfCat 2745.194 kb on - strand, within lpfCat 2745.194 kb on - strand, within lpfCat 2745.194 kb on - strand, within lpfCat 2745.194 kb on - strand, within lpfCat 2745.194 kb on - strand, within lpfCat 2745.194 kb on - strand, within lpfCat 2745.208 kb on + strand, within lpfCat 2745.249 kb on + strand, within lpfCat 2745.449 kb on + strand, within lpfCat 2745.452 kb on + strand, within lpfCat 2745.452 kb on + strand, within lpfCat 2745.452 kb on + strand, within lpfCat 2745.522 kb on + strand, within lpfCat 2745.523 kb on - strand, within lpfCat 2745.571 kb on + strand, within lpfCat 2745.571 kb on + strand, within lpfCat 2745.598 kb on + strand, within lpfCat 2745.598 kb on + strand, within lpfCat 2745.598 kb on + strand, within lpfCat 2745.598 kb on + strand, within lpfCat 2745.598 kb on + strand, within lpfCat 2745.599 kb on - strand, within lpfCat 2745.599 kb on - strand, within lpfCat 2745.599 kb on - strand, within lpfCat 2745.636 kb on + strand, within lpfCat 2745.636 kb on + strand, within lpfCat 2745.661 kb on + strand, within lpfCat 2745.661 kb on + strand, within lpfCat 2745.661 kb on + strand, within lpfCat 2745.661 kb on + strand, within lpfCat 2745.661 kb on + strand, within lpfCat 2745.662 kb on - strand, within lpfCat 2745.662 kb on - strand, within lpfCat 2745.664 kb on + strand, within lpfCat 2745.664 kb on + strand, within lpfCat 2745.665 kb on - strand, within lpfCat 2745.674 kb on + strand, within lpfCat 2745.715 kb on + strand, within lpfCat 2745.715 kb on + strand, within lpfCat 2745.715 kb on + strand, within lpfCat 2745.716 kb on - strand, within lpfCat 2745.716 kb on - strand, within lpfCat 2745.716 kb on - strand, within lpfCat 2745.716 kb on - strand, within lpfCat 2745.716 kb on - strand, within lpfCat 2745.720 kb on + strand, within lpfCat 2745.720 kb on + strand, within lpfCat 2745.759 kb on + strand, within lpfCat 2745.766 kb on - strand, within lpfCat 2745.806 kb on + strand, within lpfCat 2745.806 kb on + strand, within lpfCat 2745.806 kb on + strand, within lpfCat 2745.807 kb on - strand, within lpfCat 2745.807 kb on - strand, within lpfCat 2745.807 kb on - strand, within lpfCat 2745.872 kb on + strand, within lpfCat 2745.872 kb on + strand, within lpfCat 2745.873 kb on - strand, within lpfCat 2745.873 kb on - strand, within lpfCat 2745.873 kb on - strand, within lpfCat 2745.961 kb on - strand, within lpfCat 2745.961 kb on - strand, within lpfC

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,743,302 + +0.6
2,743,303 - +0.2
2,743,303 - +0.8
2,743,331 + -0.8
2,743,348 - +0.3
2,743,348 - +1.8
2,743,412 + +0.1
2,743,581 - +0.0
2,743,669 + -1.4
2,743,749 + -2.3
2,743,750 - lpfA1 NIAGMN_13815 0.10 -0.7
2,743,815 + lpfA1 NIAGMN_13815 0.22 +0.5
2,743,816 - lpfA1 NIAGMN_13815 0.23 -0.7
2,743,969 + lpfA1 NIAGMN_13815 0.52 -0.2
2,743,990 + lpfA1 NIAGMN_13815 0.56 -2.5
2,743,991 - lpfA1 NIAGMN_13815 0.56 -0.4
2,744,011 + lpfA1 NIAGMN_13815 0.60 +0.3
2,744,050 + lpfA1 NIAGMN_13815 0.67 +0.9
2,744,050 + lpfA1 NIAGMN_13815 0.67 -0.5
2,744,050 + lpfA1 NIAGMN_13815 0.67 -0.0
2,744,051 - lpfA1 NIAGMN_13815 0.67 +0.4
2,744,051 - lpfA1 NIAGMN_13815 0.67 -2.0
2,744,054 + lpfA1 NIAGMN_13815 0.68 +0.2
2,744,054 + lpfA1 NIAGMN_13815 0.68 +0.5
2,744,055 - lpfA1 NIAGMN_13815 0.68 -0.1
2,744,055 - lpfA1 NIAGMN_13815 0.68 -0.1
2,744,055 - lpfA1 NIAGMN_13815 0.68 +0.6
2,744,055 - lpfA1 NIAGMN_13815 0.68 +0.4
2,744,059 + lpfA1 NIAGMN_13815 0.69 +0.2
2,744,060 - lpfA1 NIAGMN_13815 0.69 +0.7
2,744,068 + lpfA1 NIAGMN_13815 0.71 -0.0
2,744,068 + lpfA1 NIAGMN_13815 0.71 -0.3
2,744,068 + lpfA1 NIAGMN_13815 0.71 -0.6
2,744,069 - lpfA1 NIAGMN_13815 0.71 +0.4
2,744,084 - lpfA1 NIAGMN_13815 0.74 -0.1
2,744,084 - lpfA1 NIAGMN_13815 0.74 +0.2
2,744,084 - lpfA1 NIAGMN_13815 0.74 +1.0
2,744,092 + lpfA1 NIAGMN_13815 0.75 -0.4
2,744,092 + lpfA1 NIAGMN_13815 0.75 +0.5
2,744,132 + lpfA1 NIAGMN_13815 0.83 +0.1
2,744,132 + lpfA1 NIAGMN_13815 0.83 +0.0
2,744,138 - lpfA1 NIAGMN_13815 0.84 +0.3
2,744,147 + lpfA1 NIAGMN_13815 0.86 -2.8
2,744,147 + lpfA1 NIAGMN_13815 0.86 +0.6
2,744,147 + lpfA1 NIAGMN_13815 0.86 +0.3
2,744,147 + lpfA1 NIAGMN_13815 0.86 -0.4
2,744,148 - lpfA1 NIAGMN_13815 0.86 +0.8
2,744,148 - lpfA1 NIAGMN_13815 0.86 -0.3
2,744,148 - lpfA1 NIAGMN_13815 0.86 +0.4
2,744,148 - lpfA1 NIAGMN_13815 0.86 +0.2
2,744,148 - lpfA1 NIAGMN_13815 0.86 -0.5
2,744,155 + lpfA1 NIAGMN_13815 0.87 +0.7
2,744,156 - lpfA1 NIAGMN_13815 0.87 +1.8
2,744,156 - lpfA1 NIAGMN_13815 0.87 -0.3
2,744,156 - lpfA1 NIAGMN_13815 0.87 -1.9
2,744,213 + +1.8
2,744,220 - -0.4
2,744,360 + lpfB NIAGMN_13820 0.11 -0.0
2,744,361 - lpfB NIAGMN_13820 0.11 +0.1
2,744,361 - lpfB NIAGMN_13820 0.11 +0.8
2,744,366 + lpfB NIAGMN_13820 0.12 -0.9
2,744,366 + lpfB NIAGMN_13820 0.12 +0.3
2,744,367 - lpfB NIAGMN_13820 0.12 -0.1
2,744,380 - lpfB NIAGMN_13820 0.14 -0.4
2,744,380 - lpfB NIAGMN_13820 0.14 -0.0
2,744,391 - lpfB NIAGMN_13820 0.15 +0.7
2,744,421 - lpfB NIAGMN_13820 0.20 -1.0
2,744,426 + lpfB NIAGMN_13820 0.20 -0.3
2,744,493 - lpfB NIAGMN_13820 0.30 -0.2
2,744,537 + lpfB NIAGMN_13820 0.37 +0.4
2,744,546 + lpfB NIAGMN_13820 0.38 -1.0
2,744,790 - lpfB NIAGMN_13820 0.73 +0.7
2,744,795 + lpfB NIAGMN_13820 0.74 +0.5
2,744,866 + lpfB NIAGMN_13820 0.84 -0.9
2,744,866 + lpfB NIAGMN_13820 0.84 +0.2
2,744,866 + lpfB NIAGMN_13820 0.84 +0.4
2,744,913 + -0.6
2,744,974 + +0.3
2,744,994 + +0.3
2,744,994 + -0.9
2,744,994 + -0.0
2,745,025 - -2.4
2,745,043 - +0.8
2,745,149 + lpfC NIAGMN_13825 0.13 +0.1
2,745,149 + lpfC NIAGMN_13825 0.13 +0.7
2,745,149 + lpfC NIAGMN_13825 0.13 -0.1
2,745,182 + lpfC NIAGMN_13825 0.16 +1.0
2,745,193 + lpfC NIAGMN_13825 0.17 +0.7
2,745,193 + lpfC NIAGMN_13825 0.17 -0.5
2,745,193 + lpfC NIAGMN_13825 0.17 +1.7
2,745,193 + lpfC NIAGMN_13825 0.17 -0.2
2,745,194 - lpfC NIAGMN_13825 0.17 -0.0
2,745,194 - lpfC NIAGMN_13825 0.17 +0.2
2,745,194 - lpfC NIAGMN_13825 0.17 -0.4
2,745,194 - lpfC NIAGMN_13825 0.17 +0.3
2,745,194 - lpfC NIAGMN_13825 0.17 +1.2
2,745,194 - lpfC NIAGMN_13825 0.17 +0.0
2,745,194 - lpfC NIAGMN_13825 0.17 -0.5
2,745,208 + lpfC NIAGMN_13825 0.19 -2.1
2,745,249 + lpfC NIAGMN_13825 0.22 +1.3
2,745,449 + lpfC NIAGMN_13825 0.41 +0.3
2,745,452 + lpfC NIAGMN_13825 0.41 +1.5
2,745,452 + lpfC NIAGMN_13825 0.41 +0.1
2,745,452 + lpfC NIAGMN_13825 0.41 +0.1
2,745,522 + lpfC NIAGMN_13825 0.47 +0.0
2,745,523 - lpfC NIAGMN_13825 0.47 -0.3
2,745,571 + lpfC NIAGMN_13825 0.52 +0.1
2,745,571 + lpfC NIAGMN_13825 0.52 -0.0
2,745,598 + lpfC NIAGMN_13825 0.54 +1.2
2,745,598 + lpfC NIAGMN_13825 0.54 -1.0
2,745,598 + lpfC NIAGMN_13825 0.54 -0.5
2,745,598 + lpfC NIAGMN_13825 0.54 -0.5
2,745,598 + lpfC NIAGMN_13825 0.54 -1.6
2,745,599 - lpfC NIAGMN_13825 0.54 +0.4
2,745,599 - lpfC NIAGMN_13825 0.54 -1.2
2,745,599 - lpfC NIAGMN_13825 0.54 +0.1
2,745,636 + lpfC NIAGMN_13825 0.58 -2.2
2,745,636 + lpfC NIAGMN_13825 0.58 -1.0
2,745,661 + lpfC NIAGMN_13825 0.60 -1.8
2,745,661 + lpfC NIAGMN_13825 0.60 +0.1
2,745,661 + lpfC NIAGMN_13825 0.60 +0.0
2,745,661 + lpfC NIAGMN_13825 0.60 +0.8
2,745,661 + lpfC NIAGMN_13825 0.60 -2.5
2,745,662 - lpfC NIAGMN_13825 0.60 -2.0
2,745,662 - lpfC NIAGMN_13825 0.60 +1.2
2,745,664 + lpfC NIAGMN_13825 0.60 +0.3
2,745,664 + lpfC NIAGMN_13825 0.60 +0.2
2,745,665 - lpfC NIAGMN_13825 0.60 -0.2
2,745,674 + lpfC NIAGMN_13825 0.61 +0.2
2,745,715 + lpfC NIAGMN_13825 0.65 +1.1
2,745,715 + lpfC NIAGMN_13825 0.65 -0.5
2,745,715 + lpfC NIAGMN_13825 0.65 -2.0
2,745,716 - lpfC NIAGMN_13825 0.65 -0.3
2,745,716 - lpfC NIAGMN_13825 0.65 +1.1
2,745,716 - lpfC NIAGMN_13825 0.65 +0.6
2,745,716 - lpfC NIAGMN_13825 0.65 +0.3
2,745,716 - lpfC NIAGMN_13825 0.65 +0.2
2,745,720 + lpfC NIAGMN_13825 0.65 -0.2
2,745,720 + lpfC NIAGMN_13825 0.65 -1.5
2,745,759 + lpfC NIAGMN_13825 0.69 -0.5
2,745,766 - lpfC NIAGMN_13825 0.69 +0.1
2,745,806 + lpfC NIAGMN_13825 0.73 +0.9
2,745,806 + lpfC NIAGMN_13825 0.73 -0.1
2,745,806 + lpfC NIAGMN_13825 0.73 +0.6
2,745,807 - lpfC NIAGMN_13825 0.73 -1.1
2,745,807 - lpfC NIAGMN_13825 0.73 +0.9
2,745,807 - lpfC NIAGMN_13825 0.73 +0.6
2,745,872 + lpfC NIAGMN_13825 0.79 +1.1
2,745,872 + lpfC NIAGMN_13825 0.79 +2.5
2,745,873 - lpfC NIAGMN_13825 0.79 -0.8
2,745,873 - lpfC NIAGMN_13825 0.79 +1.2
2,745,873 - lpfC NIAGMN_13825 0.79 +0.3
2,745,961 - lpfC NIAGMN_13825 0.87 -0.3
2,745,961 - lpfC NIAGMN_13825 0.87 +0.2

Or see this region's nucleotide sequence