Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhjX and lpfA1 are separated by 343 nucleotides lpfA1 and lpfB are separated by 64 nucleotides lpfB and lpfC are separated by 28 nucleotides
NIAGMN_13810: yhjX - Uncharacterized MFS-type transporter YhjX, at 2,742,151 to 2,743,353
yhjX
NIAGMN_13815: lpfA1 - long polar fimbria major subunit LpfA1, at 2,743,697 to 2,744,221
lpfA1
NIAGMN_13820: lpfB - long polar fimbrial biogenesis chaperone LpfB, at 2,744,286 to 2,744,972
lpfB
NIAGMN_13825: lpfC - outer membrane usher protein LpfC, at 2,745,001 to 2,746,104
lpfC
Position (kb)
2744
2745 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2743.302 kb on + strand at 2743.303 kb on - strand at 2743.303 kb on - strand at 2743.331 kb on + strand at 2743.348 kb on - strand at 2743.348 kb on - strand at 2743.412 kb on + strand at 2743.581 kb on - strand at 2743.669 kb on + strand at 2743.749 kb on + strand at 2743.750 kb on - strand, within lpfA1 at 2743.815 kb on + strand, within lpfA1 at 2743.816 kb on - strand, within lpfA1 at 2743.969 kb on + strand, within lpfA1 at 2743.990 kb on + strand, within lpfA1 at 2743.991 kb on - strand, within lpfA1 at 2744.011 kb on + strand, within lpfA1 at 2744.050 kb on + strand, within lpfA1 at 2744.050 kb on + strand, within lpfA1 at 2744.050 kb on + strand, within lpfA1 at 2744.051 kb on - strand, within lpfA1 at 2744.051 kb on - strand, within lpfA1 at 2744.054 kb on + strand, within lpfA1 at 2744.054 kb on + strand, within lpfA1 at 2744.055 kb on - strand, within lpfA1 at 2744.055 kb on - strand, within lpfA1 at 2744.055 kb on - strand, within lpfA1 at 2744.055 kb on - strand, within lpfA1 at 2744.059 kb on + strand, within lpfA1 at 2744.060 kb on - strand, within lpfA1 at 2744.068 kb on + strand, within lpfA1 at 2744.068 kb on + strand, within lpfA1 at 2744.068 kb on + strand, within lpfA1 at 2744.069 kb on - strand, within lpfA1 at 2744.084 kb on - strand, within lpfA1 at 2744.084 kb on - strand, within lpfA1 at 2744.084 kb on - strand, within lpfA1 at 2744.092 kb on + strand, within lpfA1 at 2744.092 kb on + strand, within lpfA1 at 2744.132 kb on + strand, within lpfA1 at 2744.132 kb on + strand, within lpfA1 at 2744.138 kb on - strand, within lpfA1 at 2744.147 kb on + strand, within lpfA1 at 2744.147 kb on + strand, within lpfA1 at 2744.147 kb on + strand, within lpfA1 at 2744.147 kb on + strand, within lpfA1 at 2744.148 kb on - strand, within lpfA1 at 2744.148 kb on - strand, within lpfA1 at 2744.148 kb on - strand, within lpfA1 at 2744.148 kb on - strand, within lpfA1 at 2744.148 kb on - strand, within lpfA1 at 2744.155 kb on + strand, within lpfA1 at 2744.156 kb on - strand, within lpfA1 at 2744.156 kb on - strand, within lpfA1 at 2744.156 kb on - strand, within lpfA1 at 2744.213 kb on + strand at 2744.220 kb on - strand at 2744.360 kb on + strand, within lpfB at 2744.361 kb on - strand, within lpfB at 2744.361 kb on - strand, within lpfB at 2744.366 kb on + strand, within lpfB at 2744.366 kb on + strand, within lpfB at 2744.367 kb on - strand, within lpfB at 2744.380 kb on - strand, within lpfB at 2744.380 kb on - strand, within lpfB at 2744.391 kb on - strand, within lpfB at 2744.421 kb on - strand, within lpfB at 2744.426 kb on + strand, within lpfB at 2744.493 kb on - strand, within lpfB at 2744.537 kb on + strand, within lpfB at 2744.546 kb on + strand, within lpfB at 2744.790 kb on - strand, within lpfB at 2744.795 kb on + strand, within lpfB at 2744.866 kb on + strand, within lpfB at 2744.866 kb on + strand, within lpfB at 2744.866 kb on + strand, within lpfB at 2744.913 kb on + strand at 2744.974 kb on + strand at 2744.994 kb on + strand at 2744.994 kb on + strand at 2744.994 kb on + strand at 2745.025 kb on - strand at 2745.043 kb on - strand at 2745.149 kb on + strand, within lpfC at 2745.149 kb on + strand, within lpfC at 2745.149 kb on + strand, within lpfC at 2745.182 kb on + strand, within lpfC at 2745.193 kb on + strand, within lpfC at 2745.193 kb on + strand, within lpfC at 2745.193 kb on + strand, within lpfC at 2745.193 kb on + strand, within lpfC at 2745.194 kb on - strand, within lpfC at 2745.194 kb on - strand, within lpfC at 2745.194 kb on - strand, within lpfC at 2745.194 kb on - strand, within lpfC at 2745.194 kb on - strand, within lpfC at 2745.194 kb on - strand, within lpfC at 2745.194 kb on - strand, within lpfC at 2745.208 kb on + strand, within lpfC at 2745.249 kb on + strand, within lpfC at 2745.449 kb on + strand, within lpfC at 2745.452 kb on + strand, within lpfC at 2745.452 kb on + strand, within lpfC at 2745.452 kb on + strand, within lpfC at 2745.522 kb on + strand, within lpfC at 2745.523 kb on - strand, within lpfC at 2745.571 kb on + strand, within lpfC at 2745.571 kb on + strand, within lpfC at 2745.598 kb on + strand, within lpfC at 2745.598 kb on + strand, within lpfC at 2745.598 kb on + strand, within lpfC at 2745.598 kb on + strand, within lpfC at 2745.598 kb on + strand, within lpfC at 2745.599 kb on - strand, within lpfC at 2745.599 kb on - strand, within lpfC at 2745.599 kb on - strand, within lpfC at 2745.636 kb on + strand, within lpfC at 2745.636 kb on + strand, within lpfC at 2745.661 kb on + strand, within lpfC at 2745.661 kb on + strand, within lpfC at 2745.661 kb on + strand, within lpfC at 2745.661 kb on + strand, within lpfC at 2745.661 kb on + strand, within lpfC at 2745.662 kb on - strand, within lpfC at 2745.662 kb on - strand, within lpfC at 2745.664 kb on + strand, within lpfC at 2745.664 kb on + strand, within lpfC at 2745.665 kb on - strand, within lpfC at 2745.674 kb on + strand, within lpfC at 2745.715 kb on + strand, within lpfC at 2745.715 kb on + strand, within lpfC at 2745.715 kb on + strand, within lpfC at 2745.716 kb on - strand, within lpfC at 2745.716 kb on - strand, within lpfC at 2745.716 kb on - strand, within lpfC at 2745.716 kb on - strand, within lpfC at 2745.716 kb on - strand, within lpfC at 2745.720 kb on + strand, within lpfC at 2745.720 kb on + strand, within lpfC at 2745.759 kb on + strand, within lpfC at 2745.766 kb on - strand, within lpfC at 2745.806 kb on + strand, within lpfC at 2745.806 kb on + strand, within lpfC at 2745.806 kb on + strand, within lpfC at 2745.807 kb on - strand, within lpfC at 2745.807 kb on - strand, within lpfC at 2745.807 kb on - strand, within lpfC at 2745.872 kb on + strand, within lpfC at 2745.872 kb on + strand, within lpfC at 2745.873 kb on - strand, within lpfC at 2745.873 kb on - strand, within lpfC at 2745.873 kb on - strand, within lpfC at 2745.961 kb on - strand, within lpfC at 2745.961 kb on - strand, within lpfC
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,743,302 + +0.6 2,743,303 - +0.2 2,743,303 - +0.8 2,743,331 + -0.8 2,743,348 - +0.3 2,743,348 - +1.8 2,743,412 + +0.1 2,743,581 - +0.0 2,743,669 + -1.4 2,743,749 + -2.3 2,743,750 - lpfA1 NIAGMN_13815 0.10 -0.7 2,743,815 + lpfA1 NIAGMN_13815 0.22 +0.5 2,743,816 - lpfA1 NIAGMN_13815 0.23 -0.7 2,743,969 + lpfA1 NIAGMN_13815 0.52 -0.2 2,743,990 + lpfA1 NIAGMN_13815 0.56 -2.5 2,743,991 - lpfA1 NIAGMN_13815 0.56 -0.4 2,744,011 + lpfA1 NIAGMN_13815 0.60 +0.3 2,744,050 + lpfA1 NIAGMN_13815 0.67 +0.9 2,744,050 + lpfA1 NIAGMN_13815 0.67 -0.5 2,744,050 + lpfA1 NIAGMN_13815 0.67 -0.0 2,744,051 - lpfA1 NIAGMN_13815 0.67 +0.4 2,744,051 - lpfA1 NIAGMN_13815 0.67 -2.0 2,744,054 + lpfA1 NIAGMN_13815 0.68 +0.2 2,744,054 + lpfA1 NIAGMN_13815 0.68 +0.5 2,744,055 - lpfA1 NIAGMN_13815 0.68 -0.1 2,744,055 - lpfA1 NIAGMN_13815 0.68 -0.1 2,744,055 - lpfA1 NIAGMN_13815 0.68 +0.6 2,744,055 - lpfA1 NIAGMN_13815 0.68 +0.4 2,744,059 + lpfA1 NIAGMN_13815 0.69 +0.2 2,744,060 - lpfA1 NIAGMN_13815 0.69 +0.7 2,744,068 + lpfA1 NIAGMN_13815 0.71 -0.0 2,744,068 + lpfA1 NIAGMN_13815 0.71 -0.3 2,744,068 + lpfA1 NIAGMN_13815 0.71 -0.6 2,744,069 - lpfA1 NIAGMN_13815 0.71 +0.4 2,744,084 - lpfA1 NIAGMN_13815 0.74 -0.1 2,744,084 - lpfA1 NIAGMN_13815 0.74 +0.2 2,744,084 - lpfA1 NIAGMN_13815 0.74 +1.0 2,744,092 + lpfA1 NIAGMN_13815 0.75 -0.4 2,744,092 + lpfA1 NIAGMN_13815 0.75 +0.5 2,744,132 + lpfA1 NIAGMN_13815 0.83 +0.1 2,744,132 + lpfA1 NIAGMN_13815 0.83 +0.0 2,744,138 - lpfA1 NIAGMN_13815 0.84 +0.3 2,744,147 + lpfA1 NIAGMN_13815 0.86 -2.8 2,744,147 + lpfA1 NIAGMN_13815 0.86 +0.6 2,744,147 + lpfA1 NIAGMN_13815 0.86 +0.3 2,744,147 + lpfA1 NIAGMN_13815 0.86 -0.4 2,744,148 - lpfA1 NIAGMN_13815 0.86 +0.8 2,744,148 - lpfA1 NIAGMN_13815 0.86 -0.3 2,744,148 - lpfA1 NIAGMN_13815 0.86 +0.4 2,744,148 - lpfA1 NIAGMN_13815 0.86 +0.2 2,744,148 - lpfA1 NIAGMN_13815 0.86 -0.5 2,744,155 + lpfA1 NIAGMN_13815 0.87 +0.7 2,744,156 - lpfA1 NIAGMN_13815 0.87 +1.8 2,744,156 - lpfA1 NIAGMN_13815 0.87 -0.3 2,744,156 - lpfA1 NIAGMN_13815 0.87 -1.9 2,744,213 + +1.8 2,744,220 - -0.4 2,744,360 + lpfB NIAGMN_13820 0.11 -0.0 2,744,361 - lpfB NIAGMN_13820 0.11 +0.1 2,744,361 - lpfB NIAGMN_13820 0.11 +0.8 2,744,366 + lpfB NIAGMN_13820 0.12 -0.9 2,744,366 + lpfB NIAGMN_13820 0.12 +0.3 2,744,367 - lpfB NIAGMN_13820 0.12 -0.1 2,744,380 - lpfB NIAGMN_13820 0.14 -0.4 2,744,380 - lpfB NIAGMN_13820 0.14 -0.0 2,744,391 - lpfB NIAGMN_13820 0.15 +0.7 2,744,421 - lpfB NIAGMN_13820 0.20 -1.0 2,744,426 + lpfB NIAGMN_13820 0.20 -0.3 2,744,493 - lpfB NIAGMN_13820 0.30 -0.2 2,744,537 + lpfB NIAGMN_13820 0.37 +0.4 2,744,546 + lpfB NIAGMN_13820 0.38 -1.0 2,744,790 - lpfB NIAGMN_13820 0.73 +0.7 2,744,795 + lpfB NIAGMN_13820 0.74 +0.5 2,744,866 + lpfB NIAGMN_13820 0.84 -0.9 2,744,866 + lpfB NIAGMN_13820 0.84 +0.2 2,744,866 + lpfB NIAGMN_13820 0.84 +0.4 2,744,913 + -0.6 2,744,974 + +0.3 2,744,994 + +0.3 2,744,994 + -0.9 2,744,994 + -0.0 2,745,025 - -2.4 2,745,043 - +0.8 2,745,149 + lpfC NIAGMN_13825 0.13 +0.1 2,745,149 + lpfC NIAGMN_13825 0.13 +0.7 2,745,149 + lpfC NIAGMN_13825 0.13 -0.1 2,745,182 + lpfC NIAGMN_13825 0.16 +1.0 2,745,193 + lpfC NIAGMN_13825 0.17 +0.7 2,745,193 + lpfC NIAGMN_13825 0.17 -0.5 2,745,193 + lpfC NIAGMN_13825 0.17 +1.7 2,745,193 + lpfC NIAGMN_13825 0.17 -0.2 2,745,194 - lpfC NIAGMN_13825 0.17 -0.0 2,745,194 - lpfC NIAGMN_13825 0.17 +0.2 2,745,194 - lpfC NIAGMN_13825 0.17 -0.4 2,745,194 - lpfC NIAGMN_13825 0.17 +0.3 2,745,194 - lpfC NIAGMN_13825 0.17 +1.2 2,745,194 - lpfC NIAGMN_13825 0.17 +0.0 2,745,194 - lpfC NIAGMN_13825 0.17 -0.5 2,745,208 + lpfC NIAGMN_13825 0.19 -2.1 2,745,249 + lpfC NIAGMN_13825 0.22 +1.3 2,745,449 + lpfC NIAGMN_13825 0.41 +0.3 2,745,452 + lpfC NIAGMN_13825 0.41 +1.5 2,745,452 + lpfC NIAGMN_13825 0.41 +0.1 2,745,452 + lpfC NIAGMN_13825 0.41 +0.1 2,745,522 + lpfC NIAGMN_13825 0.47 +0.0 2,745,523 - lpfC NIAGMN_13825 0.47 -0.3 2,745,571 + lpfC NIAGMN_13825 0.52 +0.1 2,745,571 + lpfC NIAGMN_13825 0.52 -0.0 2,745,598 + lpfC NIAGMN_13825 0.54 +1.2 2,745,598 + lpfC NIAGMN_13825 0.54 -1.0 2,745,598 + lpfC NIAGMN_13825 0.54 -0.5 2,745,598 + lpfC NIAGMN_13825 0.54 -0.5 2,745,598 + lpfC NIAGMN_13825 0.54 -1.6 2,745,599 - lpfC NIAGMN_13825 0.54 +0.4 2,745,599 - lpfC NIAGMN_13825 0.54 -1.2 2,745,599 - lpfC NIAGMN_13825 0.54 +0.1 2,745,636 + lpfC NIAGMN_13825 0.58 -2.2 2,745,636 + lpfC NIAGMN_13825 0.58 -1.0 2,745,661 + lpfC NIAGMN_13825 0.60 -1.8 2,745,661 + lpfC NIAGMN_13825 0.60 +0.1 2,745,661 + lpfC NIAGMN_13825 0.60 +0.0 2,745,661 + lpfC NIAGMN_13825 0.60 +0.8 2,745,661 + lpfC NIAGMN_13825 0.60 -2.5 2,745,662 - lpfC NIAGMN_13825 0.60 -2.0 2,745,662 - lpfC NIAGMN_13825 0.60 +1.2 2,745,664 + lpfC NIAGMN_13825 0.60 +0.3 2,745,664 + lpfC NIAGMN_13825 0.60 +0.2 2,745,665 - lpfC NIAGMN_13825 0.60 -0.2 2,745,674 + lpfC NIAGMN_13825 0.61 +0.2 2,745,715 + lpfC NIAGMN_13825 0.65 +1.1 2,745,715 + lpfC NIAGMN_13825 0.65 -0.5 2,745,715 + lpfC NIAGMN_13825 0.65 -2.0 2,745,716 - lpfC NIAGMN_13825 0.65 -0.3 2,745,716 - lpfC NIAGMN_13825 0.65 +1.1 2,745,716 - lpfC NIAGMN_13825 0.65 +0.6 2,745,716 - lpfC NIAGMN_13825 0.65 +0.3 2,745,716 - lpfC NIAGMN_13825 0.65 +0.2 2,745,720 + lpfC NIAGMN_13825 0.65 -0.2 2,745,720 + lpfC NIAGMN_13825 0.65 -1.5 2,745,759 + lpfC NIAGMN_13825 0.69 -0.5 2,745,766 - lpfC NIAGMN_13825 0.69 +0.1 2,745,806 + lpfC NIAGMN_13825 0.73 +0.9 2,745,806 + lpfC NIAGMN_13825 0.73 -0.1 2,745,806 + lpfC NIAGMN_13825 0.73 +0.6 2,745,807 - lpfC NIAGMN_13825 0.73 -1.1 2,745,807 - lpfC NIAGMN_13825 0.73 +0.9 2,745,807 - lpfC NIAGMN_13825 0.73 +0.6 2,745,872 + lpfC NIAGMN_13825 0.79 +1.1 2,745,872 + lpfC NIAGMN_13825 0.79 +2.5 2,745,873 - lpfC NIAGMN_13825 0.79 -0.8 2,745,873 - lpfC NIAGMN_13825 0.79 +1.2 2,745,873 - lpfC NIAGMN_13825 0.79 +0.3 2,745,961 - lpfC NIAGMN_13825 0.87 -0.3 2,745,961 - lpfC NIAGMN_13825 0.87 +0.2
Or see this region's nucleotide sequence