Strain Fitness in Escherichia coli ECRC102 around NIAGMN_13590

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyibG and rhsA are separated by 11 nucleotides NIAGMN_13590: yibG - Uncharacterized protein YibG, at 2,692,146 to 2,692,607 yibG NIAGMN_13595: rhsA - RHS element protein, at 2,692,619 to 2,696,848 rhsA Position (kb) 2692 2693Strain fitness (log2 ratio) -2 -1 0 1 2at 2691.215 kb on - strandat 2691.274 kb on + strandat 2691.277 kb on + strandat 2691.321 kb on + strandat 2691.394 kb on + strandat 2691.395 kb on - strandat 2691.408 kb on - strandat 2691.639 kb on + strandat 2691.810 kb on - strandat 2691.869 kb on - strandat 2691.902 kb on + strandat 2691.902 kb on + strandat 2691.903 kb on - strandat 2691.925 kb on + strandat 2691.930 kb on - strandat 2691.935 kb on + strandat 2691.935 kb on + strandat 2691.945 kb on - strandat 2692.003 kb on + strandat 2692.003 kb on + strandat 2692.078 kb on + strandat 2692.081 kb on + strandat 2692.082 kb on - strandat 2692.085 kb on + strandat 2692.087 kb on + strandat 2692.087 kb on + strandat 2692.087 kb on + strandat 2692.090 kb on + strandat 2692.090 kb on + strandat 2692.090 kb on + strandat 2692.115 kb on - strandat 2692.115 kb on - strandat 2692.160 kb on + strandat 2692.496 kb on - strand, within yibGat 2692.591 kb on - strandat 2692.626 kb on - strandat 2692.721 kb on - strandat 2692.721 kb on - strandat 2692.727 kb on + strandat 2692.735 kb on + strandat 2692.763 kb on + strandat 2692.836 kb on - strandat 2692.843 kb on + strandat 2692.969 kb on + strandat 2693.048 kb on - strand, within rhsAat 2693.064 kb on - strand, within rhsAat 2693.075 kb on - strand, within rhsAat 2693.099 kb on + strand, within rhsAat 2693.130 kb on - strand, within rhsAat 2693.130 kb on - strand, within rhsAat 2693.197 kb on + strand, within rhsAat 2693.197 kb on + strand, within rhsAat 2693.197 kb on + strand, within rhsAat 2693.199 kb on + strand, within rhsAat 2693.221 kb on - strand, within rhsAat 2693.221 kb on - strand, within rhsAat 2693.224 kb on - strand, within rhsAat 2693.239 kb on - strand, within rhsAat 2693.377 kb on + strand, within rhsAat 2693.378 kb on - strand, within rhsAat 2693.378 kb on - strand, within rhsAat 2693.413 kb on - strand, within rhsAat 2693.413 kb on - strand, within rhsAat 2693.413 kb on - strand, within rhsA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
2,691,215 - +0.5
2,691,274 + +0.2
2,691,277 + +0.1
2,691,321 + -0.0
2,691,394 + +0.5
2,691,395 - +0.4
2,691,408 - +1.5
2,691,639 + -0.6
2,691,810 - -0.2
2,691,869 - +0.3
2,691,902 + +0.2
2,691,902 + +1.1
2,691,903 - -0.2
2,691,925 + +0.8
2,691,930 - +0.3
2,691,935 + -0.5
2,691,935 + -0.0
2,691,945 - +0.6
2,692,003 + +1.2
2,692,003 + +1.3
2,692,078 + +1.1
2,692,081 + +0.9
2,692,082 - -0.1
2,692,085 + -1.6
2,692,087 + +1.1
2,692,087 + +0.2
2,692,087 + -0.9
2,692,090 + -0.5
2,692,090 + -0.5
2,692,090 + +1.0
2,692,115 - -0.8
2,692,115 - +1.9
2,692,160 + +0.5
2,692,496 - yibG NIAGMN_13590 0.76 +1.6
2,692,591 - +0.4
2,692,626 - +0.6
2,692,721 - +0.2
2,692,721 - -0.3
2,692,727 + +0.2
2,692,735 + -0.7
2,692,763 + -0.7
2,692,836 - +0.4
2,692,843 + -0.8
2,692,969 + -0.2
2,693,048 - rhsA NIAGMN_13595 0.10 +0.3
2,693,064 - rhsA NIAGMN_13595 0.11 +0.2
2,693,075 - rhsA NIAGMN_13595 0.11 +0.3
2,693,099 + rhsA NIAGMN_13595 0.11 +0.1
2,693,130 - rhsA NIAGMN_13595 0.12 -1.1
2,693,130 - rhsA NIAGMN_13595 0.12 +0.1
2,693,197 + rhsA NIAGMN_13595 0.14 +0.8
2,693,197 + rhsA NIAGMN_13595 0.14 +0.6
2,693,197 + rhsA NIAGMN_13595 0.14 +0.3
2,693,199 + rhsA NIAGMN_13595 0.14 +1.2
2,693,221 - rhsA NIAGMN_13595 0.14 +0.0
2,693,221 - rhsA NIAGMN_13595 0.14 +0.7
2,693,224 - rhsA NIAGMN_13595 0.14 +1.1
2,693,239 - rhsA NIAGMN_13595 0.15 +0.6
2,693,377 + rhsA NIAGMN_13595 0.18 -2.5
2,693,378 - rhsA NIAGMN_13595 0.18 +0.4
2,693,378 - rhsA NIAGMN_13595 0.18 +1.1
2,693,413 - rhsA NIAGMN_13595 0.19 +0.8
2,693,413 - rhsA NIAGMN_13595 0.19 +0.8
2,693,413 - rhsA NIAGMN_13595 0.19 -0.4

Or see this region's nucleotide sequence