Strain Fitness in Escherichia coli ECRC102 around NIAGMN_13585

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmtlA and NIAGMN_13580 are separated by 536 nucleotidesNIAGMN_13580 and yibH are separated by 2 nucleotides NIAGMN_13575: mtlA - PTS mannitol transporter subunit IICBA, at 2,686,591 to 2,688,504 mtlA NIAGMN_13580: NIAGMN_13580 - DUF3302 domain-containing protein, at 2,689,041 to 2,689,403 _13580 NIAGMN_13585: yibH - Inner membrane protein YibH, at 2,689,406 to 2,690,542 yibH Position (kb) 2689 2690 2691Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2688.411 kb on + strandat 2688.411 kb on + strandat 2688.489 kb on + strandat 2688.504 kb on + strandat 2688.504 kb on + strandat 2688.505 kb on - strandat 2688.505 kb on - strandat 2688.520 kb on + strandat 2688.520 kb on + strandat 2688.520 kb on + strandat 2688.520 kb on + strandat 2688.521 kb on - strandat 2688.521 kb on - strandat 2688.521 kb on - strandat 2688.521 kb on - strandat 2688.521 kb on - strandat 2688.521 kb on - strandat 2688.521 kb on - strandat 2688.562 kb on + strandat 2688.592 kb on + strandat 2688.592 kb on + strandat 2688.592 kb on + strandat 2688.593 kb on - strandat 2688.593 kb on - strandat 2688.596 kb on + strandat 2688.597 kb on - strandat 2688.597 kb on - strandat 2688.597 kb on - strandat 2688.624 kb on - strandat 2688.665 kb on - strandat 2688.669 kb on - strandat 2688.669 kb on - strandat 2688.686 kb on - strandat 2688.686 kb on - strandat 2688.686 kb on - strandat 2688.828 kb on + strandat 2688.859 kb on + strandat 2688.859 kb on + strandat 2688.859 kb on + strandat 2688.860 kb on - strandat 2688.860 kb on - strandat 2688.869 kb on + strandat 2688.869 kb on + strandat 2688.870 kb on - strandat 2688.870 kb on - strandat 2688.883 kb on - strandat 2688.891 kb on + strandat 2688.892 kb on - strandat 2688.895 kb on + strandat 2688.895 kb on + strandat 2688.895 kb on + strandat 2688.895 kb on + strandat 2688.895 kb on + strandat 2688.895 kb on + strandat 2688.896 kb on - strandat 2688.896 kb on - strandat 2688.896 kb on - strandat 2688.896 kb on - strandat 2688.896 kb on - strandat 2688.896 kb on - strandat 2688.896 kb on - strandat 2688.899 kb on + strandat 2688.899 kb on + strandat 2688.899 kb on + strandat 2688.899 kb on + strandat 2688.900 kb on - strandat 2688.900 kb on - strandat 2688.917 kb on + strandat 2688.962 kb on + strandat 2688.973 kb on + strandat 2689.019 kb on + strandat 2689.019 kb on + strandat 2689.020 kb on - strandat 2689.020 kb on - strandat 2689.040 kb on + strandat 2689.040 kb on + strandat 2689.040 kb on + strandat 2689.040 kb on + strandat 2689.040 kb on + strandat 2689.040 kb on + strandat 2689.040 kb on + strandat 2689.040 kb on + strandat 2689.041 kb on - strandat 2689.041 kb on - strandat 2689.041 kb on - strandat 2689.041 kb on - strandat 2689.041 kb on - strandat 2689.048 kb on + strandat 2689.049 kb on - strandat 2689.053 kb on + strandat 2689.054 kb on - strandat 2689.054 kb on - strandat 2689.115 kb on - strand, within NIAGMN_13580at 2689.115 kb on - strand, within NIAGMN_13580at 2689.129 kb on - strand, within NIAGMN_13580at 2689.176 kb on - strand, within NIAGMN_13580at 2689.176 kb on - strand, within NIAGMN_13580at 2689.200 kb on - strand, within NIAGMN_13580at 2689.200 kb on - strand, within NIAGMN_13580at 2689.200 kb on - strand, within NIAGMN_13580at 2689.211 kb on + strand, within NIAGMN_13580at 2689.211 kb on + strand, within NIAGMN_13580at 2689.211 kb on + strand, within NIAGMN_13580at 2689.211 kb on + strand, within NIAGMN_13580at 2689.212 kb on - strand, within NIAGMN_13580at 2689.245 kb on + strand, within NIAGMN_13580at 2689.246 kb on - strand, within NIAGMN_13580at 2689.246 kb on - strand, within NIAGMN_13580at 2689.380 kb on + strandat 2689.380 kb on + strandat 2689.380 kb on + strandat 2689.381 kb on - strandat 2689.401 kb on + strandat 2689.401 kb on + strandat 2689.401 kb on + strandat 2689.401 kb on + strandat 2689.401 kb on + strandat 2689.401 kb on + strandat 2689.401 kb on + strandat 2689.401 kb on + strandat 2689.401 kb on + strandat 2689.401 kb on + strandat 2689.401 kb on + strandat 2689.402 kb on - strandat 2689.402 kb on - strandat 2689.402 kb on - strandat 2689.402 kb on - strandat 2689.402 kb on - strandat 2689.413 kb on + strandat 2689.413 kb on + strandat 2689.413 kb on + strandat 2689.413 kb on + strandat 2689.414 kb on - strandat 2689.414 kb on - strandat 2689.425 kb on + strandat 2689.431 kb on - strandat 2689.539 kb on + strand, within yibHat 2689.550 kb on + strand, within yibHat 2689.551 kb on - strand, within yibHat 2689.551 kb on - strand, within yibHat 2689.551 kb on - strand, within yibHat 2689.562 kb on + strand, within yibHat 2689.563 kb on - strand, within yibHat 2689.571 kb on - strand, within yibHat 2689.571 kb on - strand, within yibHat 2689.590 kb on + strand, within yibHat 2689.590 kb on + strand, within yibHat 2689.591 kb on - strand, within yibHat 2689.601 kb on - strand, within yibHat 2689.601 kb on - strand, within yibHat 2689.627 kb on + strand, within yibHat 2689.627 kb on + strand, within yibHat 2689.648 kb on + strand, within yibHat 2689.649 kb on - strand, within yibHat 2689.750 kb on + strand, within yibHat 2689.750 kb on + strand, within yibHat 2689.750 kb on + strand, within yibHat 2689.750 kb on + strand, within yibHat 2689.750 kb on + strand, within yibHat 2689.750 kb on + strand, within yibHat 2689.750 kb on + strand, within yibHat 2689.753 kb on + strand, within yibHat 2689.753 kb on + strand, within yibHat 2689.753 kb on + strand, within yibHat 2689.753 kb on + strand, within yibHat 2689.753 kb on + strand, within yibHat 2689.753 kb on + strand, within yibHat 2689.754 kb on - strand, within yibHat 2689.754 kb on - strand, within yibHat 2689.754 kb on - strand, within yibHat 2689.754 kb on - strand, within yibHat 2689.755 kb on + strand, within yibHat 2689.755 kb on + strand, within yibHat 2689.755 kb on + strand, within yibHat 2689.756 kb on - strand, within yibHat 2689.756 kb on - strand, within yibHat 2689.756 kb on - strand, within yibHat 2689.756 kb on - strand, within yibHat 2689.847 kb on + strand, within yibHat 2689.848 kb on - strand, within yibHat 2689.848 kb on - strand, within yibHat 2689.987 kb on + strand, within yibHat 2689.987 kb on + strand, within yibHat 2689.988 kb on - strand, within yibHat 2689.988 kb on - strand, within yibHat 2690.022 kb on + strand, within yibHat 2690.023 kb on - strand, within yibHat 2690.036 kb on - strand, within yibHat 2690.036 kb on - strand, within yibHat 2690.048 kb on + strand, within yibHat 2690.049 kb on - strand, within yibHat 2690.090 kb on + strand, within yibHat 2690.090 kb on + strand, within yibHat 2690.090 kb on + strand, within yibHat 2690.091 kb on - strand, within yibHat 2690.095 kb on + strand, within yibHat 2690.103 kb on + strand, within yibHat 2690.119 kb on + strand, within yibHat 2690.120 kb on - strand, within yibHat 2690.120 kb on - strand, within yibHat 2690.123 kb on + strand, within yibHat 2690.124 kb on - strand, within yibHat 2690.124 kb on - strand, within yibHat 2690.124 kb on - strand, within yibHat 2690.215 kb on - strand, within yibHat 2690.290 kb on + strand, within yibHat 2690.290 kb on + strand, within yibHat 2690.293 kb on + strand, within yibHat 2690.293 kb on + strand, within yibHat 2690.293 kb on + strand, within yibHat 2690.293 kb on + strand, within yibHat 2690.293 kb on + strand, within yibHat 2690.293 kb on + strand, within yibHat 2690.294 kb on - strand, within yibHat 2690.294 kb on - strand, within yibHat 2690.294 kb on - strand, within yibHat 2690.298 kb on + strand, within yibHat 2690.410 kb on + strand, within yibHat 2690.435 kb on + strandat 2690.435 kb on + strandat 2690.499 kb on + strandat 2690.499 kb on + strandat 2690.500 kb on - strandat 2690.523 kb on - strandat 2690.523 kb on - strandat 2690.523 kb on - strandat 2690.559 kb on + strandat 2690.578 kb on + strandat 2690.579 kb on - strandat 2690.579 kb on - strandat 2690.602 kb on + strandat 2690.602 kb on + strandat 2690.603 kb on - strandat 2690.603 kb on - strandat 2690.646 kb on - strandat 2690.713 kb on + strandat 2690.713 kb on + strandat 2690.714 kb on - strandat 2690.714 kb on - strandat 2690.715 kb on + strandat 2690.715 kb on + strandat 2690.715 kb on + strandat 2690.715 kb on + strandat 2690.715 kb on + strandat 2690.715 kb on + strandat 2690.715 kb on + strandat 2690.715 kb on + strandat 2690.715 kb on + strandat 2690.715 kb on + strandat 2690.716 kb on - strandat 2690.716 kb on - strandat 2690.716 kb on - strandat 2690.716 kb on - strandat 2690.716 kb on - strandat 2690.716 kb on - strandat 2690.716 kb on - strandat 2690.716 kb on - strandat 2690.740 kb on + strandat 2690.740 kb on + strandat 2690.740 kb on + strandat 2690.741 kb on - strandat 2690.799 kb on + strandat 2690.800 kb on - strandat 2690.800 kb on - strandat 2690.892 kb on + strandat 2691.215 kb on - strandat 2691.274 kb on + strandat 2691.277 kb on + strandat 2691.321 kb on + strandat 2691.394 kb on + strandat 2691.395 kb on - strandat 2691.408 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,688,411 + +0.8
2,688,411 + -0.3
2,688,489 + +1.7
2,688,504 + +0.0
2,688,504 + +0.1
2,688,505 - +0.9
2,688,505 - -0.8
2,688,520 + +1.3
2,688,520 + +0.1
2,688,520 + -0.3
2,688,520 + -0.8
2,688,521 - +0.7
2,688,521 - +2.2
2,688,521 - +1.6
2,688,521 - -0.4
2,688,521 - +0.2
2,688,521 - +0.5
2,688,521 - +0.4
2,688,562 + +0.0
2,688,592 + +0.3
2,688,592 + -0.3
2,688,592 + +0.2
2,688,593 - +0.4
2,688,593 - +0.2
2,688,596 + -0.0
2,688,597 - -0.1
2,688,597 - -0.2
2,688,597 - -0.5
2,688,624 - +0.1
2,688,665 - -0.3
2,688,669 - +0.6
2,688,669 - -0.0
2,688,686 - -0.8
2,688,686 - +0.7
2,688,686 - -1.5
2,688,828 + -1.0
2,688,859 + +0.8
2,688,859 + -0.8
2,688,859 + +0.5
2,688,860 - +0.1
2,688,860 - -0.7
2,688,869 + +0.3
2,688,869 + -0.5
2,688,870 - +0.9
2,688,870 - -0.9
2,688,883 - +1.0
2,688,891 + -0.4
2,688,892 - -0.3
2,688,895 + +0.3
2,688,895 + -0.6
2,688,895 + -0.7
2,688,895 + -0.1
2,688,895 + -1.0
2,688,895 + +0.7
2,688,896 - -0.1
2,688,896 - -0.1
2,688,896 - -0.6
2,688,896 - +0.4
2,688,896 - +1.5
2,688,896 - +0.0
2,688,896 - -1.6
2,688,899 + -0.8
2,688,899 + -1.4
2,688,899 + +0.1
2,688,899 + -0.7
2,688,900 - -0.7
2,688,900 - +0.1
2,688,917 + +1.1
2,688,962 + +0.3
2,688,973 + +0.4
2,689,019 + -0.2
2,689,019 + +0.6
2,689,020 - +1.7
2,689,020 - -0.3
2,689,040 + +0.3
2,689,040 + +0.7
2,689,040 + +0.4
2,689,040 + -1.8
2,689,040 + +0.2
2,689,040 + -0.2
2,689,040 + +0.8
2,689,040 + -0.2
2,689,041 - +0.1
2,689,041 - -0.5
2,689,041 - -0.2
2,689,041 - +0.2
2,689,041 - -0.7
2,689,048 + +0.8
2,689,049 - +0.5
2,689,053 + +0.0
2,689,054 - +0.2
2,689,054 - +0.3
2,689,115 - NIAGMN_13580 0.20 +2.3
2,689,115 - NIAGMN_13580 0.20 -0.1
2,689,129 - NIAGMN_13580 0.24 +2.3
2,689,176 - NIAGMN_13580 0.37 +0.0
2,689,176 - NIAGMN_13580 0.37 -2.8
2,689,200 - NIAGMN_13580 0.44 +0.8
2,689,200 - NIAGMN_13580 0.44 +0.6
2,689,200 - NIAGMN_13580 0.44 +0.5
2,689,211 + NIAGMN_13580 0.47 +0.0
2,689,211 + NIAGMN_13580 0.47 -0.3
2,689,211 + NIAGMN_13580 0.47 +0.5
2,689,211 + NIAGMN_13580 0.47 +1.6
2,689,212 - NIAGMN_13580 0.47 +1.3
2,689,245 + NIAGMN_13580 0.56 +0.3
2,689,246 - NIAGMN_13580 0.56 -0.9
2,689,246 - NIAGMN_13580 0.56 +1.0
2,689,380 + -0.3
2,689,380 + +0.6
2,689,380 + -0.4
2,689,381 - -1.0
2,689,401 + +0.5
2,689,401 + -0.9
2,689,401 + +0.7
2,689,401 + +0.5
2,689,401 + -0.5
2,689,401 + -1.6
2,689,401 + +0.5
2,689,401 + -0.7
2,689,401 + +1.8
2,689,401 + +0.2
2,689,401 + +0.1
2,689,402 - -0.2
2,689,402 - -0.0
2,689,402 - -0.0
2,689,402 - -0.1
2,689,402 - -0.2
2,689,413 + +0.0
2,689,413 + +0.9
2,689,413 + -1.7
2,689,413 + +0.8
2,689,414 - +0.5
2,689,414 - -0.3
2,689,425 + +0.1
2,689,431 - +0.9
2,689,539 + yibH NIAGMN_13585 0.12 +2.7
2,689,550 + yibH NIAGMN_13585 0.13 -0.7
2,689,551 - yibH NIAGMN_13585 0.13 +0.1
2,689,551 - yibH NIAGMN_13585 0.13 -0.8
2,689,551 - yibH NIAGMN_13585 0.13 -0.0
2,689,562 + yibH NIAGMN_13585 0.14 -0.6
2,689,563 - yibH NIAGMN_13585 0.14 +1.0
2,689,571 - yibH NIAGMN_13585 0.15 -1.1
2,689,571 - yibH NIAGMN_13585 0.15 +0.2
2,689,590 + yibH NIAGMN_13585 0.16 +0.1
2,689,590 + yibH NIAGMN_13585 0.16 +1.0
2,689,591 - yibH NIAGMN_13585 0.16 +1.1
2,689,601 - yibH NIAGMN_13585 0.17 +1.3
2,689,601 - yibH NIAGMN_13585 0.17 +2.1
2,689,627 + yibH NIAGMN_13585 0.19 +0.7
2,689,627 + yibH NIAGMN_13585 0.19 -0.6
2,689,648 + yibH NIAGMN_13585 0.21 +0.6
2,689,649 - yibH NIAGMN_13585 0.21 +0.1
2,689,750 + yibH NIAGMN_13585 0.30 +2.6
2,689,750 + yibH NIAGMN_13585 0.30 -2.0
2,689,750 + yibH NIAGMN_13585 0.30 -0.8
2,689,750 + yibH NIAGMN_13585 0.30 -1.4
2,689,750 + yibH NIAGMN_13585 0.30 -0.0
2,689,750 + yibH NIAGMN_13585 0.30 -0.0
2,689,750 + yibH NIAGMN_13585 0.30 +0.3
2,689,753 + yibH NIAGMN_13585 0.31 -2.3
2,689,753 + yibH NIAGMN_13585 0.31 +1.0
2,689,753 + yibH NIAGMN_13585 0.31 +0.4
2,689,753 + yibH NIAGMN_13585 0.31 +1.0
2,689,753 + yibH NIAGMN_13585 0.31 -0.3
2,689,753 + yibH NIAGMN_13585 0.31 -0.4
2,689,754 - yibH NIAGMN_13585 0.31 +0.8
2,689,754 - yibH NIAGMN_13585 0.31 +0.3
2,689,754 - yibH NIAGMN_13585 0.31 +1.4
2,689,754 - yibH NIAGMN_13585 0.31 +0.3
2,689,755 + yibH NIAGMN_13585 0.31 -0.1
2,689,755 + yibH NIAGMN_13585 0.31 +0.6
2,689,755 + yibH NIAGMN_13585 0.31 -0.3
2,689,756 - yibH NIAGMN_13585 0.31 +0.6
2,689,756 - yibH NIAGMN_13585 0.31 -1.7
2,689,756 - yibH NIAGMN_13585 0.31 +0.2
2,689,756 - yibH NIAGMN_13585 0.31 -0.2
2,689,847 + yibH NIAGMN_13585 0.39 -1.0
2,689,848 - yibH NIAGMN_13585 0.39 -1.9
2,689,848 - yibH NIAGMN_13585 0.39 +0.1
2,689,987 + yibH NIAGMN_13585 0.51 +0.5
2,689,987 + yibH NIAGMN_13585 0.51 -0.4
2,689,988 - yibH NIAGMN_13585 0.51 +0.1
2,689,988 - yibH NIAGMN_13585 0.51 -0.0
2,690,022 + yibH NIAGMN_13585 0.54 -0.1
2,690,023 - yibH NIAGMN_13585 0.54 -1.2
2,690,036 - yibH NIAGMN_13585 0.55 +0.6
2,690,036 - yibH NIAGMN_13585 0.55 -0.0
2,690,048 + yibH NIAGMN_13585 0.56 -0.2
2,690,049 - yibH NIAGMN_13585 0.57 +0.5
2,690,090 + yibH NIAGMN_13585 0.60 +0.0
2,690,090 + yibH NIAGMN_13585 0.60 +0.3
2,690,090 + yibH NIAGMN_13585 0.60 -0.7
2,690,091 - yibH NIAGMN_13585 0.60 -0.5
2,690,095 + yibH NIAGMN_13585 0.61 +0.0
2,690,103 + yibH NIAGMN_13585 0.61 -0.2
2,690,119 + yibH NIAGMN_13585 0.63 -0.4
2,690,120 - yibH NIAGMN_13585 0.63 +1.6
2,690,120 - yibH NIAGMN_13585 0.63 +0.3
2,690,123 + yibH NIAGMN_13585 0.63 +0.6
2,690,124 - yibH NIAGMN_13585 0.63 +0.2
2,690,124 - yibH NIAGMN_13585 0.63 -0.2
2,690,124 - yibH NIAGMN_13585 0.63 -0.1
2,690,215 - yibH NIAGMN_13585 0.71 +1.1
2,690,290 + yibH NIAGMN_13585 0.78 +1.1
2,690,290 + yibH NIAGMN_13585 0.78 +0.8
2,690,293 + yibH NIAGMN_13585 0.78 +0.4
2,690,293 + yibH NIAGMN_13585 0.78 +0.9
2,690,293 + yibH NIAGMN_13585 0.78 -0.2
2,690,293 + yibH NIAGMN_13585 0.78 -1.1
2,690,293 + yibH NIAGMN_13585 0.78 -0.1
2,690,293 + yibH NIAGMN_13585 0.78 -0.2
2,690,294 - yibH NIAGMN_13585 0.78 -0.4
2,690,294 - yibH NIAGMN_13585 0.78 +0.6
2,690,294 - yibH NIAGMN_13585 0.78 -0.7
2,690,298 + yibH NIAGMN_13585 0.78 +1.0
2,690,410 + yibH NIAGMN_13585 0.88 +1.5
2,690,435 + +2.3
2,690,435 + +0.4
2,690,499 + -2.5
2,690,499 + -0.0
2,690,500 - +0.6
2,690,523 - -0.7
2,690,523 - +0.2
2,690,523 - -0.4
2,690,559 + +0.3
2,690,578 + -0.7
2,690,579 - +0.0
2,690,579 - +0.6
2,690,602 + +1.7
2,690,602 + -0.1
2,690,603 - +1.0
2,690,603 - -0.7
2,690,646 - +0.3
2,690,713 + +0.8
2,690,713 + -1.1
2,690,714 - +0.2
2,690,714 - -0.5
2,690,715 + +1.0
2,690,715 + -0.3
2,690,715 + -0.6
2,690,715 + +0.0
2,690,715 + -0.3
2,690,715 + +0.2
2,690,715 + -2.4
2,690,715 + +0.6
2,690,715 + +0.3
2,690,715 + +0.1
2,690,716 - -0.1
2,690,716 - +0.1
2,690,716 - +0.4
2,690,716 - +2.7
2,690,716 - -0.0
2,690,716 - +0.2
2,690,716 - +1.2
2,690,716 - +0.8
2,690,740 + +0.4
2,690,740 + +0.8
2,690,740 + +0.2
2,690,741 - +0.4
2,690,799 + -0.2
2,690,800 - +0.6
2,690,800 - +0.2
2,690,892 + +2.0
2,691,215 - +0.5
2,691,274 + +0.2
2,691,277 + +0.1
2,691,321 + -0.0
2,691,394 + +0.5
2,691,395 - +0.4
2,691,408 - +1.5

Or see this region's nucleotide sequence