Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dnaA and dnaN are separated by 4 nucleotides dnaN and recF overlap by 1 nucleotides
NIAGMN_12765: dnaA - chromosomal replication initiator protein DnaA, at 2,531,770 to 2,533,173
dnaA
NIAGMN_12775: dnaN - DNA polymerase III subunit beta, at 2,533,178 to 2,534,278
dnaN
NIAGMN_12780: recF - DNA replication/repair protein RecF, at 2,534,278 to 2,535,351
recF
Position (kb)
2533
2534
2535 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2533.171 kb on + strand at 2534.276 kb on + strand at 2534.276 kb on + strand at 2534.276 kb on + strand at 2534.276 kb on + strand at 2534.276 kb on + strand at 2534.276 kb on + strand at 2534.277 kb on - strand at 2534.277 kb on - strand at 2534.277 kb on - strand at 2534.277 kb on - strand at 2534.339 kb on + strand at 2534.340 kb on - strand at 2534.353 kb on - strand at 2534.363 kb on + strand at 2534.363 kb on + strand at 2534.407 kb on + strand, within recF at 2534.407 kb on + strand, within recF at 2534.407 kb on + strand, within recF at 2534.407 kb on + strand, within recF at 2534.408 kb on - strand, within recF at 2534.408 kb on - strand, within recF at 2534.408 kb on - strand, within recF at 2534.408 kb on - strand, within recF at 2534.408 kb on - strand, within recF at 2534.408 kb on - strand, within recF at 2534.408 kb on - strand, within recF at 2534.408 kb on - strand, within recF at 2534.409 kb on + strand, within recF at 2534.409 kb on + strand, within recF at 2534.409 kb on + strand, within recF at 2534.410 kb on - strand, within recF at 2534.532 kb on - strand, within recF at 2534.586 kb on + strand, within recF at 2534.587 kb on - strand, within recF at 2534.587 kb on - strand, within recF at 2534.587 kb on - strand, within recF at 2534.587 kb on - strand, within recF at 2534.587 kb on - strand, within recF at 2534.643 kb on + strand, within recF at 2534.643 kb on + strand, within recF at 2534.644 kb on - strand, within recF at 2534.644 kb on - strand, within recF at 2534.644 kb on - strand, within recF at 2534.644 kb on - strand, within recF at 2534.668 kb on + strand, within recF at 2534.788 kb on + strand, within recF at 2534.798 kb on + strand, within recF at 2534.799 kb on - strand, within recF at 2534.844 kb on + strand, within recF at 2534.844 kb on + strand, within recF at 2534.860 kb on + strand, within recF at 2534.861 kb on - strand, within recF at 2534.861 kb on - strand, within recF at 2534.862 kb on + strand, within recF at 2534.892 kb on + strand, within recF at 2534.965 kb on + strand, within recF at 2534.965 kb on + strand, within recF at 2534.966 kb on - strand, within recF at 2534.966 kb on - strand, within recF at 2534.985 kb on + strand, within recF at 2534.985 kb on + strand, within recF at 2534.985 kb on + strand, within recF at 2535.008 kb on + strand, within recF at 2535.009 kb on - strand, within recF at 2535.013 kb on + strand, within recF at 2535.013 kb on + strand, within recF at 2535.013 kb on + strand, within recF at 2535.044 kb on + strand, within recF at 2535.045 kb on - strand, within recF at 2535.045 kb on - strand, within recF at 2535.045 kb on - strand, within recF at 2535.078 kb on + strand, within recF at 2535.099 kb on + strand, within recF at 2535.099 kb on + strand, within recF at 2535.099 kb on + strand, within recF at 2535.100 kb on - strand, within recF at 2535.119 kb on + strand, within recF at 2535.119 kb on + strand, within recF at 2535.120 kb on - strand, within recF at 2535.120 kb on - strand, within recF at 2535.120 kb on - strand, within recF at 2535.172 kb on + strand, within recF at 2535.172 kb on + strand, within recF at 2535.172 kb on + strand, within recF at 2535.173 kb on - strand, within recF at 2535.173 kb on - strand, within recF at 2535.173 kb on - strand, within recF at 2535.179 kb on + strand, within recF at 2535.179 kb on + strand, within recF at 2535.179 kb on + strand, within recF at 2535.180 kb on - strand, within recF at 2535.236 kb on + strand, within recF at 2535.244 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,533,171 + +0.5 2,534,276 + -1.3 2,534,276 + -0.8 2,534,276 + -2.2 2,534,276 + +1.4 2,534,276 + -0.4 2,534,276 + -0.7 2,534,277 - -1.1 2,534,277 - -0.4 2,534,277 - +0.2 2,534,277 - -0.6 2,534,339 + -1.0 2,534,340 - +0.4 2,534,353 - +0.2 2,534,363 + -1.3 2,534,363 + +0.1 2,534,407 + recF NIAGMN_12780 0.12 +0.3 2,534,407 + recF NIAGMN_12780 0.12 +0.7 2,534,407 + recF NIAGMN_12780 0.12 -0.6 2,534,407 + recF NIAGMN_12780 0.12 -0.2 2,534,408 - recF NIAGMN_12780 0.12 -0.2 2,534,408 - recF NIAGMN_12780 0.12 -3.3 2,534,408 - recF NIAGMN_12780 0.12 -0.2 2,534,408 - recF NIAGMN_12780 0.12 -0.9 2,534,408 - recF NIAGMN_12780 0.12 -0.7 2,534,408 - recF NIAGMN_12780 0.12 -2.6 2,534,408 - recF NIAGMN_12780 0.12 +0.4 2,534,408 - recF NIAGMN_12780 0.12 -0.7 2,534,409 + recF NIAGMN_12780 0.12 -0.3 2,534,409 + recF NIAGMN_12780 0.12 +1.6 2,534,409 + recF NIAGMN_12780 0.12 +0.8 2,534,410 - recF NIAGMN_12780 0.12 -1.5 2,534,532 - recF NIAGMN_12780 0.24 +1.3 2,534,586 + recF NIAGMN_12780 0.29 -0.1 2,534,587 - recF NIAGMN_12780 0.29 -0.9 2,534,587 - recF NIAGMN_12780 0.29 -0.2 2,534,587 - recF NIAGMN_12780 0.29 -0.7 2,534,587 - recF NIAGMN_12780 0.29 -0.4 2,534,587 - recF NIAGMN_12780 0.29 -0.5 2,534,643 + recF NIAGMN_12780 0.34 -0.4 2,534,643 + recF NIAGMN_12780 0.34 +0.2 2,534,644 - recF NIAGMN_12780 0.34 -2.0 2,534,644 - recF NIAGMN_12780 0.34 -0.0 2,534,644 - recF NIAGMN_12780 0.34 -0.6 2,534,644 - recF NIAGMN_12780 0.34 -1.0 2,534,668 + recF NIAGMN_12780 0.36 -0.2 2,534,788 + recF NIAGMN_12780 0.47 -0.2 2,534,798 + recF NIAGMN_12780 0.48 -2.7 2,534,799 - recF NIAGMN_12780 0.49 -0.5 2,534,844 + recF NIAGMN_12780 0.53 +0.6 2,534,844 + recF NIAGMN_12780 0.53 +0.6 2,534,860 + recF NIAGMN_12780 0.54 -1.2 2,534,861 - recF NIAGMN_12780 0.54 -2.2 2,534,861 - recF NIAGMN_12780 0.54 +0.9 2,534,862 + recF NIAGMN_12780 0.54 -0.2 2,534,892 + recF NIAGMN_12780 0.57 +0.2 2,534,965 + recF NIAGMN_12780 0.64 +0.7 2,534,965 + recF NIAGMN_12780 0.64 -2.8 2,534,966 - recF NIAGMN_12780 0.64 -2.8 2,534,966 - recF NIAGMN_12780 0.64 -0.0 2,534,985 + recF NIAGMN_12780 0.66 -0.0 2,534,985 + recF NIAGMN_12780 0.66 +0.4 2,534,985 + recF NIAGMN_12780 0.66 +1.0 2,535,008 + recF NIAGMN_12780 0.68 +0.5 2,535,009 - recF NIAGMN_12780 0.68 -0.1 2,535,013 + recF NIAGMN_12780 0.68 +0.5 2,535,013 + recF NIAGMN_12780 0.68 -0.9 2,535,013 + recF NIAGMN_12780 0.68 +0.3 2,535,044 + recF NIAGMN_12780 0.71 -0.3 2,535,045 - recF NIAGMN_12780 0.71 +0.1 2,535,045 - recF NIAGMN_12780 0.71 -3.9 2,535,045 - recF NIAGMN_12780 0.71 -1.8 2,535,078 + recF NIAGMN_12780 0.74 -0.1 2,535,099 + recF NIAGMN_12780 0.76 -1.3 2,535,099 + recF NIAGMN_12780 0.76 -1.4 2,535,099 + recF NIAGMN_12780 0.76 -0.5 2,535,100 - recF NIAGMN_12780 0.77 -0.7 2,535,119 + recF NIAGMN_12780 0.78 -1.5 2,535,119 + recF NIAGMN_12780 0.78 +0.2 2,535,120 - recF NIAGMN_12780 0.78 +0.0 2,535,120 - recF NIAGMN_12780 0.78 -0.4 2,535,120 - recF NIAGMN_12780 0.78 +0.4 2,535,172 + recF NIAGMN_12780 0.83 -0.6 2,535,172 + recF NIAGMN_12780 0.83 -1.1 2,535,172 + recF NIAGMN_12780 0.83 +0.2 2,535,173 - recF NIAGMN_12780 0.83 -1.2 2,535,173 - recF NIAGMN_12780 0.83 +0.5 2,535,173 - recF NIAGMN_12780 0.83 -0.7 2,535,179 + recF NIAGMN_12780 0.84 +0.8 2,535,179 + recF NIAGMN_12780 0.84 -0.4 2,535,179 + recF NIAGMN_12780 0.84 -0.4 2,535,180 - recF NIAGMN_12780 0.84 -0.4 2,535,236 + recF NIAGMN_12780 0.89 -0.1 2,535,244 - -0.4
Or see this region's nucleotide sequence