Strain Fitness in Escherichia coli ECRC102 around NIAGMN_12775

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaA and dnaN are separated by 4 nucleotidesdnaN and recF overlap by 1 nucleotides NIAGMN_12765: dnaA - chromosomal replication initiator protein DnaA, at 2,531,770 to 2,533,173 dnaA NIAGMN_12775: dnaN - DNA polymerase III subunit beta, at 2,533,178 to 2,534,278 dnaN NIAGMN_12780: recF - DNA replication/repair protein RecF, at 2,534,278 to 2,535,351 recF Position (kb) 2533 2534 2535Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2533.171 kb on + strandat 2534.276 kb on + strandat 2534.276 kb on + strandat 2534.276 kb on + strandat 2534.276 kb on + strandat 2534.276 kb on + strandat 2534.276 kb on + strandat 2534.277 kb on - strandat 2534.277 kb on - strandat 2534.277 kb on - strandat 2534.277 kb on - strandat 2534.339 kb on + strandat 2534.340 kb on - strandat 2534.353 kb on - strandat 2534.363 kb on + strandat 2534.363 kb on + strandat 2534.407 kb on + strand, within recFat 2534.407 kb on + strand, within recFat 2534.407 kb on + strand, within recFat 2534.407 kb on + strand, within recFat 2534.408 kb on - strand, within recFat 2534.408 kb on - strand, within recFat 2534.408 kb on - strand, within recFat 2534.408 kb on - strand, within recFat 2534.408 kb on - strand, within recFat 2534.408 kb on - strand, within recFat 2534.408 kb on - strand, within recFat 2534.408 kb on - strand, within recFat 2534.409 kb on + strand, within recFat 2534.409 kb on + strand, within recFat 2534.409 kb on + strand, within recFat 2534.410 kb on - strand, within recFat 2534.532 kb on - strand, within recFat 2534.586 kb on + strand, within recFat 2534.587 kb on - strand, within recFat 2534.587 kb on - strand, within recFat 2534.587 kb on - strand, within recFat 2534.587 kb on - strand, within recFat 2534.587 kb on - strand, within recFat 2534.643 kb on + strand, within recFat 2534.643 kb on + strand, within recFat 2534.644 kb on - strand, within recFat 2534.644 kb on - strand, within recFat 2534.644 kb on - strand, within recFat 2534.644 kb on - strand, within recFat 2534.668 kb on + strand, within recFat 2534.788 kb on + strand, within recFat 2534.798 kb on + strand, within recFat 2534.799 kb on - strand, within recFat 2534.844 kb on + strand, within recFat 2534.844 kb on + strand, within recFat 2534.860 kb on + strand, within recFat 2534.861 kb on - strand, within recFat 2534.861 kb on - strand, within recFat 2534.862 kb on + strand, within recFat 2534.892 kb on + strand, within recFat 2534.965 kb on + strand, within recFat 2534.965 kb on + strand, within recFat 2534.966 kb on - strand, within recFat 2534.966 kb on - strand, within recFat 2534.985 kb on + strand, within recFat 2534.985 kb on + strand, within recFat 2534.985 kb on + strand, within recFat 2535.008 kb on + strand, within recFat 2535.009 kb on - strand, within recFat 2535.013 kb on + strand, within recFat 2535.013 kb on + strand, within recFat 2535.013 kb on + strand, within recFat 2535.044 kb on + strand, within recFat 2535.045 kb on - strand, within recFat 2535.045 kb on - strand, within recFat 2535.045 kb on - strand, within recFat 2535.078 kb on + strand, within recFat 2535.099 kb on + strand, within recFat 2535.099 kb on + strand, within recFat 2535.099 kb on + strand, within recFat 2535.100 kb on - strand, within recFat 2535.119 kb on + strand, within recFat 2535.119 kb on + strand, within recFat 2535.120 kb on - strand, within recFat 2535.120 kb on - strand, within recFat 2535.120 kb on - strand, within recFat 2535.172 kb on + strand, within recFat 2535.172 kb on + strand, within recFat 2535.172 kb on + strand, within recFat 2535.173 kb on - strand, within recFat 2535.173 kb on - strand, within recFat 2535.173 kb on - strand, within recFat 2535.179 kb on + strand, within recFat 2535.179 kb on + strand, within recFat 2535.179 kb on + strand, within recFat 2535.180 kb on - strand, within recFat 2535.236 kb on + strand, within recFat 2535.244 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,533,171 + +0.5
2,534,276 + -1.3
2,534,276 + -0.8
2,534,276 + -2.2
2,534,276 + +1.4
2,534,276 + -0.4
2,534,276 + -0.7
2,534,277 - -1.1
2,534,277 - -0.4
2,534,277 - +0.2
2,534,277 - -0.6
2,534,339 + -1.0
2,534,340 - +0.4
2,534,353 - +0.2
2,534,363 + -1.3
2,534,363 + +0.1
2,534,407 + recF NIAGMN_12780 0.12 +0.3
2,534,407 + recF NIAGMN_12780 0.12 +0.7
2,534,407 + recF NIAGMN_12780 0.12 -0.6
2,534,407 + recF NIAGMN_12780 0.12 -0.2
2,534,408 - recF NIAGMN_12780 0.12 -0.2
2,534,408 - recF NIAGMN_12780 0.12 -3.3
2,534,408 - recF NIAGMN_12780 0.12 -0.2
2,534,408 - recF NIAGMN_12780 0.12 -0.9
2,534,408 - recF NIAGMN_12780 0.12 -0.7
2,534,408 - recF NIAGMN_12780 0.12 -2.6
2,534,408 - recF NIAGMN_12780 0.12 +0.4
2,534,408 - recF NIAGMN_12780 0.12 -0.7
2,534,409 + recF NIAGMN_12780 0.12 -0.3
2,534,409 + recF NIAGMN_12780 0.12 +1.6
2,534,409 + recF NIAGMN_12780 0.12 +0.8
2,534,410 - recF NIAGMN_12780 0.12 -1.5
2,534,532 - recF NIAGMN_12780 0.24 +1.3
2,534,586 + recF NIAGMN_12780 0.29 -0.1
2,534,587 - recF NIAGMN_12780 0.29 -0.9
2,534,587 - recF NIAGMN_12780 0.29 -0.2
2,534,587 - recF NIAGMN_12780 0.29 -0.7
2,534,587 - recF NIAGMN_12780 0.29 -0.4
2,534,587 - recF NIAGMN_12780 0.29 -0.5
2,534,643 + recF NIAGMN_12780 0.34 -0.4
2,534,643 + recF NIAGMN_12780 0.34 +0.2
2,534,644 - recF NIAGMN_12780 0.34 -2.0
2,534,644 - recF NIAGMN_12780 0.34 -0.0
2,534,644 - recF NIAGMN_12780 0.34 -0.6
2,534,644 - recF NIAGMN_12780 0.34 -1.0
2,534,668 + recF NIAGMN_12780 0.36 -0.2
2,534,788 + recF NIAGMN_12780 0.47 -0.2
2,534,798 + recF NIAGMN_12780 0.48 -2.7
2,534,799 - recF NIAGMN_12780 0.49 -0.5
2,534,844 + recF NIAGMN_12780 0.53 +0.6
2,534,844 + recF NIAGMN_12780 0.53 +0.6
2,534,860 + recF NIAGMN_12780 0.54 -1.2
2,534,861 - recF NIAGMN_12780 0.54 -2.2
2,534,861 - recF NIAGMN_12780 0.54 +0.9
2,534,862 + recF NIAGMN_12780 0.54 -0.2
2,534,892 + recF NIAGMN_12780 0.57 +0.2
2,534,965 + recF NIAGMN_12780 0.64 +0.7
2,534,965 + recF NIAGMN_12780 0.64 -2.8
2,534,966 - recF NIAGMN_12780 0.64 -2.8
2,534,966 - recF NIAGMN_12780 0.64 -0.0
2,534,985 + recF NIAGMN_12780 0.66 -0.0
2,534,985 + recF NIAGMN_12780 0.66 +0.4
2,534,985 + recF NIAGMN_12780 0.66 +1.0
2,535,008 + recF NIAGMN_12780 0.68 +0.5
2,535,009 - recF NIAGMN_12780 0.68 -0.1
2,535,013 + recF NIAGMN_12780 0.68 +0.5
2,535,013 + recF NIAGMN_12780 0.68 -0.9
2,535,013 + recF NIAGMN_12780 0.68 +0.3
2,535,044 + recF NIAGMN_12780 0.71 -0.3
2,535,045 - recF NIAGMN_12780 0.71 +0.1
2,535,045 - recF NIAGMN_12780 0.71 -3.9
2,535,045 - recF NIAGMN_12780 0.71 -1.8
2,535,078 + recF NIAGMN_12780 0.74 -0.1
2,535,099 + recF NIAGMN_12780 0.76 -1.3
2,535,099 + recF NIAGMN_12780 0.76 -1.4
2,535,099 + recF NIAGMN_12780 0.76 -0.5
2,535,100 - recF NIAGMN_12780 0.77 -0.7
2,535,119 + recF NIAGMN_12780 0.78 -1.5
2,535,119 + recF NIAGMN_12780 0.78 +0.2
2,535,120 - recF NIAGMN_12780 0.78 +0.0
2,535,120 - recF NIAGMN_12780 0.78 -0.4
2,535,120 - recF NIAGMN_12780 0.78 +0.4
2,535,172 + recF NIAGMN_12780 0.83 -0.6
2,535,172 + recF NIAGMN_12780 0.83 -1.1
2,535,172 + recF NIAGMN_12780 0.83 +0.2
2,535,173 - recF NIAGMN_12780 0.83 -1.2
2,535,173 - recF NIAGMN_12780 0.83 +0.5
2,535,173 - recF NIAGMN_12780 0.83 -0.7
2,535,179 + recF NIAGMN_12780 0.84 +0.8
2,535,179 + recF NIAGMN_12780 0.84 -0.4
2,535,179 + recF NIAGMN_12780 0.84 -0.4
2,535,180 - recF NIAGMN_12780 0.84 -0.4
2,535,236 + recF NIAGMN_12780 0.89 -0.1
2,535,244 - -0.4

Or see this region's nucleotide sequence