Strain Fitness in Escherichia coli ECRC102 around NIAGMN_12740

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_12730 and NIAGMN_12735 overlap by 50 nucleotidesNIAGMN_12735 and NIAGMN_12740 are separated by 149 nucleotidesNIAGMN_12740 and yidC are separated by 105 nucleotides NIAGMN_12730: NIAGMN_12730 - toxin, at 2,524,988 to 2,526,976 _12730 NIAGMN_12735: NIAGMN_12735 - hypothetical protein, at 2,526,927 to 2,527,157 _12735 NIAGMN_12740: NIAGMN_12740 - tRNA modification GTPase MnmE, at 2,527,307 to 2,528,671 _12740 NIAGMN_12745: yidC - membrane protein insertase YidC, at 2,528,777 to 2,530,423 yidC Position (kb) 2527 2528 2529Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2526.460 kb on + strand, within NIAGMN_12730at 2526.618 kb on + strand, within NIAGMN_12730at 2526.619 kb on - strand, within NIAGMN_12730at 2526.643 kb on + strand, within NIAGMN_12730at 2526.745 kb on + strand, within NIAGMN_12730at 2526.765 kb on - strand, within NIAGMN_12730at 2526.807 kb on + strandat 2526.808 kb on - strandat 2526.931 kb on + strandat 2526.931 kb on + strandat 2526.932 kb on - strandat 2526.932 kb on - strandat 2526.932 kb on - strandat 2526.933 kb on + strandat 2526.934 kb on - strandat 2527.043 kb on - strand, within NIAGMN_12735at 2527.045 kb on + strand, within NIAGMN_12735at 2527.155 kb on + strandat 2527.199 kb on + strandat 2527.199 kb on + strandat 2527.200 kb on - strandat 2527.228 kb on - strandat 2527.255 kb on + strandat 2527.259 kb on + strandat 2527.260 kb on - strandat 2527.289 kb on + strandat 2527.289 kb on + strandat 2527.290 kb on - strandat 2527.290 kb on - strandat 2527.290 kb on - strandat 2527.290 kb on - strandat 2527.300 kb on - strandat 2527.308 kb on + strandat 2527.308 kb on + strandat 2527.308 kb on + strandat 2527.309 kb on - strandat 2527.309 kb on - strandat 2527.309 kb on - strandat 2527.309 kb on - strandat 2527.309 kb on - strandat 2527.309 kb on - strandat 2527.313 kb on - strandat 2528.653 kb on + strandat 2528.755 kb on - strandat 2528.856 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,526,460 + NIAGMN_12730 0.74 -0.6
2,526,618 + NIAGMN_12730 0.82 -0.2
2,526,619 - NIAGMN_12730 0.82 +0.9
2,526,643 + NIAGMN_12730 0.83 +0.5
2,526,745 + NIAGMN_12730 0.88 +0.1
2,526,765 - NIAGMN_12730 0.89 +1.4
2,526,807 + +0.1
2,526,808 - +1.7
2,526,931 + -0.9
2,526,931 + +0.1
2,526,932 - -3.3
2,526,932 - +0.7
2,526,932 - +0.4
2,526,933 + +0.4
2,526,934 - -0.1
2,527,043 - NIAGMN_12735 0.50 +0.5
2,527,045 + NIAGMN_12735 0.51 +0.8
2,527,155 + +0.5
2,527,199 + +0.1
2,527,199 + -0.8
2,527,200 - -0.3
2,527,228 - +0.1
2,527,255 + -0.0
2,527,259 + +1.4
2,527,260 - -0.2
2,527,289 + -1.7
2,527,289 + +0.6
2,527,290 - +0.9
2,527,290 - +0.2
2,527,290 - -1.3
2,527,290 - +2.3
2,527,300 - +0.4
2,527,308 + -0.1
2,527,308 + -1.0
2,527,308 + +1.1
2,527,309 - +0.7
2,527,309 - -3.4
2,527,309 - +0.3
2,527,309 - +0.2
2,527,309 - +0.1
2,527,309 - +0.6
2,527,313 - -0.4
2,528,653 + +0.1
2,528,755 - -1.0
2,528,856 - +0.8

Or see this region's nucleotide sequence