Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hdfR and Trp_trna are separated by 95 nucleotides Trp_trna and Asp_trna are separated by 8 nucleotides Asp_trna and 5S_rrna are separated by 54 nucleotides 5S_rrna and 23S_rrna are separated by 94 nucleotides
NIAGMN_12430: hdfR - HTH-type transcriptional regulator HdfR, at 2,460,320 to 2,461,159
hdfR
NIAGMN_12435: Trp_trna - tRNA-Trp(cca), at 2,461,255 to 2,461,330
_trna
NIAGMN_12440: Asp_trna - tRNA-Asp(gtc), at 2,461,339 to 2,461,415
_trna
NIAGMN_12445: 5S_rrna - 5S ribosomal RNA, at 2,461,470 to 2,461,585
_rrna
NIAGMN_12450: 23S_rrna - 23S ribosomal RNA, at 2,461,680 to 2,464,584
_rrna
Position (kb)
2461
2462 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2460.395 kb on + strand at 2460.395 kb on + strand at 2460.510 kb on + strand, within hdfR at 2460.511 kb on - strand, within hdfR at 2460.518 kb on + strand, within hdfR at 2460.557 kb on - strand, within hdfR at 2460.571 kb on + strand, within hdfR at 2460.571 kb on + strand, within hdfR at 2460.572 kb on - strand, within hdfR at 2460.625 kb on + strand, within hdfR at 2460.625 kb on + strand, within hdfR at 2460.625 kb on + strand, within hdfR at 2460.625 kb on + strand, within hdfR at 2460.625 kb on + strand, within hdfR at 2460.625 kb on + strand, within hdfR at 2460.625 kb on + strand, within hdfR at 2460.625 kb on + strand, within hdfR at 2460.625 kb on + strand, within hdfR at 2460.625 kb on + strand, within hdfR at 2460.625 kb on + strand, within hdfR at 2460.626 kb on - strand, within hdfR at 2460.626 kb on - strand, within hdfR at 2460.626 kb on - strand, within hdfR at 2460.626 kb on - strand, within hdfR at 2460.626 kb on - strand, within hdfR at 2460.631 kb on + strand, within hdfR at 2460.631 kb on + strand, within hdfR at 2460.632 kb on - strand, within hdfR at 2460.653 kb on + strand, within hdfR at 2460.653 kb on + strand, within hdfR at 2460.673 kb on + strand, within hdfR at 2460.681 kb on + strand, within hdfR at 2460.681 kb on + strand, within hdfR at 2460.681 kb on + strand, within hdfR at 2460.682 kb on - strand, within hdfR at 2460.682 kb on - strand, within hdfR at 2460.720 kb on + strand, within hdfR at 2460.720 kb on + strand, within hdfR at 2460.754 kb on + strand, within hdfR at 2460.754 kb on + strand, within hdfR at 2460.754 kb on + strand, within hdfR at 2460.754 kb on + strand, within hdfR at 2460.754 kb on + strand, within hdfR at 2460.754 kb on + strand, within hdfR at 2460.754 kb on + strand, within hdfR at 2460.754 kb on + strand, within hdfR at 2460.754 kb on + strand, within hdfR at 2460.754 kb on + strand, within hdfR at 2460.755 kb on - strand, within hdfR at 2460.755 kb on - strand, within hdfR at 2460.755 kb on - strand, within hdfR at 2460.757 kb on + strand, within hdfR at 2460.757 kb on + strand, within hdfR at 2460.758 kb on - strand, within hdfR at 2460.787 kb on + strand, within hdfR at 2460.787 kb on + strand, within hdfR at 2460.787 kb on + strand, within hdfR at 2460.787 kb on + strand, within hdfR at 2460.816 kb on + strand, within hdfR at 2460.824 kb on + strand, within hdfR at 2460.824 kb on + strand, within hdfR at 2460.825 kb on - strand, within hdfR at 2460.826 kb on + strand, within hdfR at 2460.826 kb on + strand, within hdfR at 2460.826 kb on + strand, within hdfR at 2460.842 kb on - strand, within hdfR at 2460.846 kb on + strand, within hdfR at 2460.846 kb on + strand, within hdfR at 2460.859 kb on + strand, within hdfR at 2460.859 kb on + strand, within hdfR at 2460.859 kb on + strand, within hdfR at 2460.859 kb on + strand, within hdfR at 2460.859 kb on + strand, within hdfR at 2460.860 kb on - strand, within hdfR at 2460.863 kb on + strand, within hdfR at 2460.985 kb on + strand, within hdfR at 2461.021 kb on + strand, within hdfR at 2461.083 kb on + strand at 2461.126 kb on - strand at 2461.154 kb on + strand at 2461.154 kb on + strand at 2461.155 kb on - strand at 2461.185 kb on + strand at 2461.186 kb on - strand at 2461.195 kb on + strand at 2461.210 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,460,395 + -0.6 2,460,395 + -2.0 2,460,510 + hdfR NIAGMN_12430 0.23 -1.9 2,460,511 - hdfR NIAGMN_12430 0.23 -0.8 2,460,518 + hdfR NIAGMN_12430 0.24 -2.0 2,460,557 - hdfR NIAGMN_12430 0.28 -0.4 2,460,571 + hdfR NIAGMN_12430 0.30 -0.7 2,460,571 + hdfR NIAGMN_12430 0.30 -0.4 2,460,572 - hdfR NIAGMN_12430 0.30 -1.7 2,460,625 + hdfR NIAGMN_12430 0.36 -0.4 2,460,625 + hdfR NIAGMN_12430 0.36 -3.5 2,460,625 + hdfR NIAGMN_12430 0.36 +0.0 2,460,625 + hdfR NIAGMN_12430 0.36 +0.8 2,460,625 + hdfR NIAGMN_12430 0.36 -2.6 2,460,625 + hdfR NIAGMN_12430 0.36 -0.6 2,460,625 + hdfR NIAGMN_12430 0.36 -0.3 2,460,625 + hdfR NIAGMN_12430 0.36 -1.6 2,460,625 + hdfR NIAGMN_12430 0.36 -3.1 2,460,625 + hdfR NIAGMN_12430 0.36 -0.7 2,460,625 + hdfR NIAGMN_12430 0.36 -3.3 2,460,626 - hdfR NIAGMN_12430 0.36 -1.3 2,460,626 - hdfR NIAGMN_12430 0.36 -1.8 2,460,626 - hdfR NIAGMN_12430 0.36 +0.2 2,460,626 - hdfR NIAGMN_12430 0.36 -0.9 2,460,626 - hdfR NIAGMN_12430 0.36 -2.9 2,460,631 + hdfR NIAGMN_12430 0.37 -3.1 2,460,631 + hdfR NIAGMN_12430 0.37 +0.1 2,460,632 - hdfR NIAGMN_12430 0.37 -0.9 2,460,653 + hdfR NIAGMN_12430 0.40 -0.7 2,460,653 + hdfR NIAGMN_12430 0.40 -1.1 2,460,673 + hdfR NIAGMN_12430 0.42 -0.6 2,460,681 + hdfR NIAGMN_12430 0.43 -1.1 2,460,681 + hdfR NIAGMN_12430 0.43 -0.1 2,460,681 + hdfR NIAGMN_12430 0.43 -1.1 2,460,682 - hdfR NIAGMN_12430 0.43 -1.7 2,460,682 - hdfR NIAGMN_12430 0.43 +0.0 2,460,720 + hdfR NIAGMN_12430 0.48 -1.9 2,460,720 + hdfR NIAGMN_12430 0.48 +1.0 2,460,754 + hdfR NIAGMN_12430 0.52 -0.2 2,460,754 + hdfR NIAGMN_12430 0.52 -0.2 2,460,754 + hdfR NIAGMN_12430 0.52 -1.2 2,460,754 + hdfR NIAGMN_12430 0.52 -1.9 2,460,754 + hdfR NIAGMN_12430 0.52 -0.3 2,460,754 + hdfR NIAGMN_12430 0.52 -1.5 2,460,754 + hdfR NIAGMN_12430 0.52 +0.4 2,460,754 + hdfR NIAGMN_12430 0.52 -0.4 2,460,754 + hdfR NIAGMN_12430 0.52 -0.4 2,460,754 + hdfR NIAGMN_12430 0.52 +2.4 2,460,755 - hdfR NIAGMN_12430 0.52 -1.1 2,460,755 - hdfR NIAGMN_12430 0.52 -1.2 2,460,755 - hdfR NIAGMN_12430 0.52 -2.5 2,460,757 + hdfR NIAGMN_12430 0.52 -4.0 2,460,757 + hdfR NIAGMN_12430 0.52 -0.6 2,460,758 - hdfR NIAGMN_12430 0.52 -1.4 2,460,787 + hdfR NIAGMN_12430 0.56 -1.9 2,460,787 + hdfR NIAGMN_12430 0.56 -0.8 2,460,787 + hdfR NIAGMN_12430 0.56 -1.0 2,460,787 + hdfR NIAGMN_12430 0.56 +1.7 2,460,816 + hdfR NIAGMN_12430 0.59 -1.1 2,460,824 + hdfR NIAGMN_12430 0.60 -2.0 2,460,824 + hdfR NIAGMN_12430 0.60 -1.1 2,460,825 - hdfR NIAGMN_12430 0.60 -0.2 2,460,826 + hdfR NIAGMN_12430 0.60 +0.5 2,460,826 + hdfR NIAGMN_12430 0.60 -0.3 2,460,826 + hdfR NIAGMN_12430 0.60 -0.2 2,460,842 - hdfR NIAGMN_12430 0.62 -0.3 2,460,846 + hdfR NIAGMN_12430 0.63 -1.5 2,460,846 + hdfR NIAGMN_12430 0.63 -0.2 2,460,859 + hdfR NIAGMN_12430 0.64 -4.1 2,460,859 + hdfR NIAGMN_12430 0.64 -3.4 2,460,859 + hdfR NIAGMN_12430 0.64 -1.6 2,460,859 + hdfR NIAGMN_12430 0.64 -0.3 2,460,859 + hdfR NIAGMN_12430 0.64 -3.4 2,460,860 - hdfR NIAGMN_12430 0.64 +0.1 2,460,863 + hdfR NIAGMN_12430 0.65 -1.7 2,460,985 + hdfR NIAGMN_12430 0.79 -2.4 2,461,021 + hdfR NIAGMN_12430 0.83 +0.4 2,461,083 + -1.7 2,461,126 - -2.1 2,461,154 + +0.7 2,461,154 + -0.1 2,461,155 - -0.5 2,461,185 + +0.2 2,461,186 - +0.3 2,461,195 + +0.6 2,461,210 + +2.1
Or see this region's nucleotide sequence