Strain Fitness in Escherichia coli ECRC102 around NIAGMN_12440

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthdfR and Trp_trna are separated by 95 nucleotidesTrp_trna and Asp_trna are separated by 8 nucleotidesAsp_trna and 5S_rrna are separated by 54 nucleotides5S_rrna and 23S_rrna are separated by 94 nucleotides NIAGMN_12430: hdfR - HTH-type transcriptional regulator HdfR, at 2,460,320 to 2,461,159 hdfR NIAGMN_12435: Trp_trna - tRNA-Trp(cca), at 2,461,255 to 2,461,330 _trna NIAGMN_12440: Asp_trna - tRNA-Asp(gtc), at 2,461,339 to 2,461,415 _trna NIAGMN_12445: 5S_rrna - 5S ribosomal RNA, at 2,461,470 to 2,461,585 _rrna NIAGMN_12450: 23S_rrna - 23S ribosomal RNA, at 2,461,680 to 2,464,584 _rrna Position (kb) 2461 2462Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2460.395 kb on + strandat 2460.395 kb on + strandat 2460.510 kb on + strand, within hdfRat 2460.511 kb on - strand, within hdfRat 2460.518 kb on + strand, within hdfRat 2460.557 kb on - strand, within hdfRat 2460.571 kb on + strand, within hdfRat 2460.571 kb on + strand, within hdfRat 2460.572 kb on - strand, within hdfRat 2460.625 kb on + strand, within hdfRat 2460.625 kb on + strand, within hdfRat 2460.625 kb on + strand, within hdfRat 2460.625 kb on + strand, within hdfRat 2460.625 kb on + strand, within hdfRat 2460.625 kb on + strand, within hdfRat 2460.625 kb on + strand, within hdfRat 2460.625 kb on + strand, within hdfRat 2460.625 kb on + strand, within hdfRat 2460.625 kb on + strand, within hdfRat 2460.625 kb on + strand, within hdfRat 2460.626 kb on - strand, within hdfRat 2460.626 kb on - strand, within hdfRat 2460.626 kb on - strand, within hdfRat 2460.626 kb on - strand, within hdfRat 2460.626 kb on - strand, within hdfRat 2460.631 kb on + strand, within hdfRat 2460.631 kb on + strand, within hdfRat 2460.632 kb on - strand, within hdfRat 2460.653 kb on + strand, within hdfRat 2460.653 kb on + strand, within hdfRat 2460.673 kb on + strand, within hdfRat 2460.681 kb on + strand, within hdfRat 2460.681 kb on + strand, within hdfRat 2460.681 kb on + strand, within hdfRat 2460.682 kb on - strand, within hdfRat 2460.682 kb on - strand, within hdfRat 2460.720 kb on + strand, within hdfRat 2460.720 kb on + strand, within hdfRat 2460.754 kb on + strand, within hdfRat 2460.754 kb on + strand, within hdfRat 2460.754 kb on + strand, within hdfRat 2460.754 kb on + strand, within hdfRat 2460.754 kb on + strand, within hdfRat 2460.754 kb on + strand, within hdfRat 2460.754 kb on + strand, within hdfRat 2460.754 kb on + strand, within hdfRat 2460.754 kb on + strand, within hdfRat 2460.754 kb on + strand, within hdfRat 2460.755 kb on - strand, within hdfRat 2460.755 kb on - strand, within hdfRat 2460.755 kb on - strand, within hdfRat 2460.757 kb on + strand, within hdfRat 2460.757 kb on + strand, within hdfRat 2460.758 kb on - strand, within hdfRat 2460.787 kb on + strand, within hdfRat 2460.787 kb on + strand, within hdfRat 2460.787 kb on + strand, within hdfRat 2460.787 kb on + strand, within hdfRat 2460.816 kb on + strand, within hdfRat 2460.824 kb on + strand, within hdfRat 2460.824 kb on + strand, within hdfRat 2460.825 kb on - strand, within hdfRat 2460.826 kb on + strand, within hdfRat 2460.826 kb on + strand, within hdfRat 2460.826 kb on + strand, within hdfRat 2460.842 kb on - strand, within hdfRat 2460.846 kb on + strand, within hdfRat 2460.846 kb on + strand, within hdfRat 2460.859 kb on + strand, within hdfRat 2460.859 kb on + strand, within hdfRat 2460.859 kb on + strand, within hdfRat 2460.859 kb on + strand, within hdfRat 2460.859 kb on + strand, within hdfRat 2460.860 kb on - strand, within hdfRat 2460.863 kb on + strand, within hdfRat 2460.985 kb on + strand, within hdfRat 2461.021 kb on + strand, within hdfRat 2461.083 kb on + strandat 2461.126 kb on - strandat 2461.154 kb on + strandat 2461.154 kb on + strandat 2461.155 kb on - strandat 2461.185 kb on + strandat 2461.186 kb on - strandat 2461.195 kb on + strandat 2461.210 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,460,395 + -0.6
2,460,395 + -2.0
2,460,510 + hdfR NIAGMN_12430 0.23 -1.9
2,460,511 - hdfR NIAGMN_12430 0.23 -0.8
2,460,518 + hdfR NIAGMN_12430 0.24 -2.0
2,460,557 - hdfR NIAGMN_12430 0.28 -0.4
2,460,571 + hdfR NIAGMN_12430 0.30 -0.7
2,460,571 + hdfR NIAGMN_12430 0.30 -0.4
2,460,572 - hdfR NIAGMN_12430 0.30 -1.7
2,460,625 + hdfR NIAGMN_12430 0.36 -0.4
2,460,625 + hdfR NIAGMN_12430 0.36 -3.5
2,460,625 + hdfR NIAGMN_12430 0.36 +0.0
2,460,625 + hdfR NIAGMN_12430 0.36 +0.8
2,460,625 + hdfR NIAGMN_12430 0.36 -2.6
2,460,625 + hdfR NIAGMN_12430 0.36 -0.6
2,460,625 + hdfR NIAGMN_12430 0.36 -0.3
2,460,625 + hdfR NIAGMN_12430 0.36 -1.6
2,460,625 + hdfR NIAGMN_12430 0.36 -3.1
2,460,625 + hdfR NIAGMN_12430 0.36 -0.7
2,460,625 + hdfR NIAGMN_12430 0.36 -3.3
2,460,626 - hdfR NIAGMN_12430 0.36 -1.3
2,460,626 - hdfR NIAGMN_12430 0.36 -1.8
2,460,626 - hdfR NIAGMN_12430 0.36 +0.2
2,460,626 - hdfR NIAGMN_12430 0.36 -0.9
2,460,626 - hdfR NIAGMN_12430 0.36 -2.9
2,460,631 + hdfR NIAGMN_12430 0.37 -3.1
2,460,631 + hdfR NIAGMN_12430 0.37 +0.1
2,460,632 - hdfR NIAGMN_12430 0.37 -0.9
2,460,653 + hdfR NIAGMN_12430 0.40 -0.7
2,460,653 + hdfR NIAGMN_12430 0.40 -1.1
2,460,673 + hdfR NIAGMN_12430 0.42 -0.6
2,460,681 + hdfR NIAGMN_12430 0.43 -1.1
2,460,681 + hdfR NIAGMN_12430 0.43 -0.1
2,460,681 + hdfR NIAGMN_12430 0.43 -1.1
2,460,682 - hdfR NIAGMN_12430 0.43 -1.7
2,460,682 - hdfR NIAGMN_12430 0.43 +0.0
2,460,720 + hdfR NIAGMN_12430 0.48 -1.9
2,460,720 + hdfR NIAGMN_12430 0.48 +1.0
2,460,754 + hdfR NIAGMN_12430 0.52 -0.2
2,460,754 + hdfR NIAGMN_12430 0.52 -0.2
2,460,754 + hdfR NIAGMN_12430 0.52 -1.2
2,460,754 + hdfR NIAGMN_12430 0.52 -1.9
2,460,754 + hdfR NIAGMN_12430 0.52 -0.3
2,460,754 + hdfR NIAGMN_12430 0.52 -1.5
2,460,754 + hdfR NIAGMN_12430 0.52 +0.4
2,460,754 + hdfR NIAGMN_12430 0.52 -0.4
2,460,754 + hdfR NIAGMN_12430 0.52 -0.4
2,460,754 + hdfR NIAGMN_12430 0.52 +2.4
2,460,755 - hdfR NIAGMN_12430 0.52 -1.1
2,460,755 - hdfR NIAGMN_12430 0.52 -1.2
2,460,755 - hdfR NIAGMN_12430 0.52 -2.5
2,460,757 + hdfR NIAGMN_12430 0.52 -4.0
2,460,757 + hdfR NIAGMN_12430 0.52 -0.6
2,460,758 - hdfR NIAGMN_12430 0.52 -1.4
2,460,787 + hdfR NIAGMN_12430 0.56 -1.9
2,460,787 + hdfR NIAGMN_12430 0.56 -0.8
2,460,787 + hdfR NIAGMN_12430 0.56 -1.0
2,460,787 + hdfR NIAGMN_12430 0.56 +1.7
2,460,816 + hdfR NIAGMN_12430 0.59 -1.1
2,460,824 + hdfR NIAGMN_12430 0.60 -2.0
2,460,824 + hdfR NIAGMN_12430 0.60 -1.1
2,460,825 - hdfR NIAGMN_12430 0.60 -0.2
2,460,826 + hdfR NIAGMN_12430 0.60 +0.5
2,460,826 + hdfR NIAGMN_12430 0.60 -0.3
2,460,826 + hdfR NIAGMN_12430 0.60 -0.2
2,460,842 - hdfR NIAGMN_12430 0.62 -0.3
2,460,846 + hdfR NIAGMN_12430 0.63 -1.5
2,460,846 + hdfR NIAGMN_12430 0.63 -0.2
2,460,859 + hdfR NIAGMN_12430 0.64 -4.1
2,460,859 + hdfR NIAGMN_12430 0.64 -3.4
2,460,859 + hdfR NIAGMN_12430 0.64 -1.6
2,460,859 + hdfR NIAGMN_12430 0.64 -0.3
2,460,859 + hdfR NIAGMN_12430 0.64 -3.4
2,460,860 - hdfR NIAGMN_12430 0.64 +0.1
2,460,863 + hdfR NIAGMN_12430 0.65 -1.7
2,460,985 + hdfR NIAGMN_12430 0.79 -2.4
2,461,021 + hdfR NIAGMN_12430 0.83 +0.4
2,461,083 + -1.7
2,461,126 - -2.1
2,461,154 + +0.7
2,461,154 + -0.1
2,461,155 - -0.5
2,461,185 + +0.2
2,461,186 - +0.3
2,461,195 + +0.6
2,461,210 + +2.1

Or see this region's nucleotide sequence