Strain Fitness in Escherichia coli ECRC102 around NIAGMN_11720

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfdnG and fdoH are separated by 12 nucleotidesfdoH and fdoI overlap by 4 nucleotidesfdoI and fdhE overlap by 4 nucleotides NIAGMN_11710: fdnG - formate dehydrogenase-N subunit alpha, at 2,317,266 to 2,320,316 fdnG NIAGMN_11715: fdoH - formate dehydrogenase O subunit beta, at 2,320,329 to 2,321,231 fdoH NIAGMN_11720: fdoI - formate dehydrogenase cytochrome b556 subunit, at 2,321,228 to 2,321,863 fdoI NIAGMN_11725: fdhE - formate dehydrogenase accessory protein FdhE, at 2,321,860 to 2,322,789 fdhE Position (kb) 2321 2322Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2320.283 kb on + strandat 2320.283 kb on + strandat 2320.328 kb on + strandat 2320.328 kb on + strandat 2320.328 kb on + strandat 2320.328 kb on + strandat 2320.328 kb on + strandat 2320.328 kb on + strandat 2320.328 kb on + strandat 2320.328 kb on + strandat 2320.328 kb on + strandat 2320.328 kb on + strandat 2320.328 kb on + strandat 2320.328 kb on + strandat 2320.329 kb on - strandat 2320.329 kb on - strandat 2320.329 kb on - strandat 2320.329 kb on - strandat 2320.329 kb on - strandat 2320.329 kb on - strandat 2320.329 kb on - strandat 2320.329 kb on - strandat 2320.329 kb on - strandat 2320.349 kb on + strandat 2320.350 kb on - strandat 2320.350 kb on - strandat 2320.350 kb on - strandat 2320.370 kb on + strandat 2320.370 kb on + strandat 2320.455 kb on - strand, within fdoHat 2320.455 kb on - strand, within fdoHat 2320.511 kb on + strand, within fdoHat 2320.525 kb on - strand, within fdoHat 2320.525 kb on - strand, within fdoHat 2320.543 kb on + strand, within fdoHat 2320.544 kb on - strand, within fdoHat 2320.544 kb on - strand, within fdoHat 2320.544 kb on - strand, within fdoHat 2320.628 kb on + strand, within fdoHat 2320.629 kb on - strand, within fdoHat 2320.629 kb on - strand, within fdoHat 2320.629 kb on - strand, within fdoHat 2320.682 kb on + strand, within fdoHat 2320.690 kb on - strand, within fdoHat 2320.801 kb on - strand, within fdoHat 2320.808 kb on + strand, within fdoHat 2320.808 kb on + strand, within fdoHat 2320.808 kb on + strand, within fdoHat 2320.809 kb on - strand, within fdoHat 2320.809 kb on - strand, within fdoHat 2320.809 kb on - strand, within fdoHat 2320.809 kb on - strand, within fdoHat 2320.809 kb on - strand, within fdoHat 2320.809 kb on - strand, within fdoHat 2320.809 kb on - strand, within fdoHat 2320.968 kb on + strand, within fdoHat 2320.969 kb on - strand, within fdoHat 2320.991 kb on + strand, within fdoHat 2321.000 kb on + strand, within fdoHat 2321.000 kb on + strand, within fdoHat 2321.000 kb on + strand, within fdoHat 2321.000 kb on + strand, within fdoHat 2321.000 kb on + strand, within fdoHat 2321.000 kb on + strand, within fdoHat 2321.000 kb on + strand, within fdoHat 2321.000 kb on + strand, within fdoHat 2321.000 kb on + strand, within fdoHat 2321.001 kb on - strand, within fdoHat 2321.001 kb on - strand, within fdoHat 2321.001 kb on - strand, within fdoHat 2321.001 kb on - strand, within fdoHat 2321.001 kb on - strand, within fdoHat 2321.001 kb on - strand, within fdoHat 2321.001 kb on - strand, within fdoHat 2321.004 kb on + strand, within fdoHat 2321.004 kb on + strand, within fdoHat 2321.004 kb on + strand, within fdoHat 2321.004 kb on + strand, within fdoHat 2321.004 kb on + strand, within fdoHat 2321.004 kb on + strand, within fdoHat 2321.005 kb on - strand, within fdoHat 2321.005 kb on - strand, within fdoHat 2321.005 kb on - strand, within fdoHat 2321.005 kb on - strand, within fdoHat 2321.005 kb on - strand, within fdoHat 2321.005 kb on - strand, within fdoHat 2321.005 kb on - strand, within fdoHat 2321.005 kb on - strand, within fdoHat 2321.005 kb on - strand, within fdoHat 2321.037 kb on + strand, within fdoHat 2321.037 kb on + strand, within fdoHat 2321.129 kb on + strand, within fdoHat 2321.144 kb on + strandat 2321.154 kb on + strandat 2321.154 kb on + strandat 2321.155 kb on - strandat 2321.195 kb on + strandat 2321.196 kb on - strandat 2321.256 kb on - strandat 2321.272 kb on + strandat 2321.273 kb on - strandat 2321.417 kb on - strand, within fdoIat 2321.417 kb on - strand, within fdoIat 2321.466 kb on + strand, within fdoIat 2321.467 kb on - strand, within fdoIat 2321.467 kb on - strand, within fdoIat 2321.467 kb on - strand, within fdoIat 2321.483 kb on - strand, within fdoIat 2321.506 kb on + strand, within fdoIat 2321.507 kb on - strand, within fdoIat 2321.507 kb on - strand, within fdoIat 2321.529 kb on + strand, within fdoIat 2321.529 kb on + strand, within fdoIat 2321.529 kb on + strand, within fdoIat 2321.529 kb on + strand, within fdoIat 2321.529 kb on + strand, within fdoIat 2321.529 kb on + strand, within fdoIat 2321.530 kb on - strand, within fdoIat 2321.530 kb on - strand, within fdoIat 2321.530 kb on - strand, within fdoIat 2321.546 kb on + strand, within fdoIat 2321.548 kb on + strand, within fdoIat 2321.549 kb on - strand, within fdoIat 2321.549 kb on - strand, within fdoIat 2321.549 kb on - strand, within fdoIat 2321.584 kb on + strand, within fdoIat 2321.584 kb on + strand, within fdoIat 2321.634 kb on - strand, within fdoIat 2321.634 kb on - strand, within fdoIat 2321.706 kb on + strand, within fdoIat 2321.707 kb on - strand, within fdoIat 2321.707 kb on - strand, within fdoIat 2321.707 kb on - strand, within fdoIat 2321.716 kb on + strand, within fdoIat 2321.728 kb on + strand, within fdoIat 2321.728 kb on + strand, within fdoIat 2321.728 kb on + strand, within fdoIat 2321.728 kb on + strand, within fdoIat 2321.728 kb on + strand, within fdoIat 2321.728 kb on + strand, within fdoIat 2321.728 kb on + strand, within fdoIat 2321.728 kb on + strand, within fdoIat 2321.728 kb on + strand, within fdoIat 2321.728 kb on + strand, within fdoIat 2321.728 kb on + strand, within fdoIat 2321.728 kb on + strand, within fdoIat 2321.728 kb on + strand, within fdoIat 2321.729 kb on - strand, within fdoIat 2321.729 kb on - strand, within fdoIat 2321.729 kb on - strand, within fdoIat 2321.729 kb on - strand, within fdoIat 2321.729 kb on - strand, within fdoIat 2321.729 kb on - strand, within fdoIat 2321.729 kb on - strand, within fdoIat 2321.732 kb on + strand, within fdoIat 2321.732 kb on + strand, within fdoIat 2321.732 kb on + strand, within fdoIat 2321.732 kb on + strand, within fdoIat 2321.733 kb on - strand, within fdoIat 2321.873 kb on + strandat 2321.957 kb on + strand, within fdhEat 2321.957 kb on + strand, within fdhEat 2321.958 kb on - strand, within fdhEat 2322.000 kb on + strand, within fdhEat 2322.016 kb on + strand, within fdhEat 2322.017 kb on - strand, within fdhEat 2322.017 kb on - strand, within fdhEat 2322.064 kb on + strand, within fdhEat 2322.064 kb on + strand, within fdhEat 2322.064 kb on + strand, within fdhEat 2322.065 kb on - strand, within fdhEat 2322.102 kb on + strand, within fdhEat 2322.103 kb on - strand, within fdhEat 2322.276 kb on + strand, within fdhEat 2322.277 kb on - strand, within fdhEat 2322.277 kb on - strand, within fdhEat 2322.324 kb on + strand, within fdhEat 2322.324 kb on + strand, within fdhEat 2322.358 kb on + strand, within fdhEat 2322.359 kb on - strand, within fdhEat 2322.359 kb on - strand, within fdhEat 2322.444 kb on + strand, within fdhEat 2322.444 kb on + strand, within fdhEat 2322.444 kb on + strand, within fdhEat 2322.445 kb on - strand, within fdhEat 2322.445 kb on - strand, within fdhEat 2322.488 kb on + strand, within fdhEat 2322.489 kb on - strand, within fdhEat 2322.493 kb on + strand, within fdhEat 2322.493 kb on + strand, within fdhEat 2322.493 kb on + strand, within fdhEat 2322.640 kb on + strand, within fdhEat 2322.641 kb on - strand, within fdhEat 2322.641 kb on - strand, within fdhEat 2322.710 kb on + strandat 2322.787 kb on + strandat 2322.788 kb on - strandat 2322.827 kb on + strandat 2322.836 kb on + strandat 2322.837 kb on - strandat 2322.837 kb on - strandat 2322.837 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,320,283 + +0.4
2,320,283 + +0.0
2,320,328 + -0.9
2,320,328 + -0.0
2,320,328 + +0.2
2,320,328 + +0.9
2,320,328 + -0.1
2,320,328 + +1.1
2,320,328 + +0.4
2,320,328 + -0.2
2,320,328 + +0.1
2,320,328 + +0.4
2,320,328 + +0.4
2,320,328 + +0.2
2,320,329 - +0.2
2,320,329 - -0.0
2,320,329 - -0.3
2,320,329 - -0.1
2,320,329 - +2.5
2,320,329 - +1.1
2,320,329 - -0.1
2,320,329 - +0.2
2,320,329 - +0.4
2,320,349 + -1.0
2,320,350 - +1.7
2,320,350 - -1.4
2,320,350 - -0.7
2,320,370 + +0.0
2,320,370 + +0.6
2,320,455 - fdoH NIAGMN_11715 0.14 +1.1
2,320,455 - fdoH NIAGMN_11715 0.14 +2.5
2,320,511 + fdoH NIAGMN_11715 0.20 -0.4
2,320,525 - fdoH NIAGMN_11715 0.22 +0.1
2,320,525 - fdoH NIAGMN_11715 0.22 +0.1
2,320,543 + fdoH NIAGMN_11715 0.24 +0.3
2,320,544 - fdoH NIAGMN_11715 0.24 +0.5
2,320,544 - fdoH NIAGMN_11715 0.24 -1.1
2,320,544 - fdoH NIAGMN_11715 0.24 +0.6
2,320,628 + fdoH NIAGMN_11715 0.33 +0.8
2,320,629 - fdoH NIAGMN_11715 0.33 -0.6
2,320,629 - fdoH NIAGMN_11715 0.33 -0.0
2,320,629 - fdoH NIAGMN_11715 0.33 -1.6
2,320,682 + fdoH NIAGMN_11715 0.39 +0.1
2,320,690 - fdoH NIAGMN_11715 0.40 +1.4
2,320,801 - fdoH NIAGMN_11715 0.52 -0.4
2,320,808 + fdoH NIAGMN_11715 0.53 +1.0
2,320,808 + fdoH NIAGMN_11715 0.53 -0.5
2,320,808 + fdoH NIAGMN_11715 0.53 -0.3
2,320,809 - fdoH NIAGMN_11715 0.53 +0.1
2,320,809 - fdoH NIAGMN_11715 0.53 -1.1
2,320,809 - fdoH NIAGMN_11715 0.53 -0.2
2,320,809 - fdoH NIAGMN_11715 0.53 -0.9
2,320,809 - fdoH NIAGMN_11715 0.53 +0.1
2,320,809 - fdoH NIAGMN_11715 0.53 +0.3
2,320,809 - fdoH NIAGMN_11715 0.53 -0.0
2,320,968 + fdoH NIAGMN_11715 0.71 +0.3
2,320,969 - fdoH NIAGMN_11715 0.71 -0.8
2,320,991 + fdoH NIAGMN_11715 0.73 -0.9
2,321,000 + fdoH NIAGMN_11715 0.74 +0.3
2,321,000 + fdoH NIAGMN_11715 0.74 +0.1
2,321,000 + fdoH NIAGMN_11715 0.74 -0.3
2,321,000 + fdoH NIAGMN_11715 0.74 -0.2
2,321,000 + fdoH NIAGMN_11715 0.74 +0.4
2,321,000 + fdoH NIAGMN_11715 0.74 +0.4
2,321,000 + fdoH NIAGMN_11715 0.74 +0.4
2,321,000 + fdoH NIAGMN_11715 0.74 +0.3
2,321,000 + fdoH NIAGMN_11715 0.74 +1.4
2,321,001 - fdoH NIAGMN_11715 0.74 -0.1
2,321,001 - fdoH NIAGMN_11715 0.74 +0.8
2,321,001 - fdoH NIAGMN_11715 0.74 +0.9
2,321,001 - fdoH NIAGMN_11715 0.74 -1.6
2,321,001 - fdoH NIAGMN_11715 0.74 -0.0
2,321,001 - fdoH NIAGMN_11715 0.74 -2.8
2,321,001 - fdoH NIAGMN_11715 0.74 +0.9
2,321,004 + fdoH NIAGMN_11715 0.75 +0.4
2,321,004 + fdoH NIAGMN_11715 0.75 -3.5
2,321,004 + fdoH NIAGMN_11715 0.75 -0.2
2,321,004 + fdoH NIAGMN_11715 0.75 +0.9
2,321,004 + fdoH NIAGMN_11715 0.75 +0.7
2,321,004 + fdoH NIAGMN_11715 0.75 -0.4
2,321,005 - fdoH NIAGMN_11715 0.75 +0.9
2,321,005 - fdoH NIAGMN_11715 0.75 +0.1
2,321,005 - fdoH NIAGMN_11715 0.75 -0.4
2,321,005 - fdoH NIAGMN_11715 0.75 -0.5
2,321,005 - fdoH NIAGMN_11715 0.75 +0.3
2,321,005 - fdoH NIAGMN_11715 0.75 +0.6
2,321,005 - fdoH NIAGMN_11715 0.75 +0.2
2,321,005 - fdoH NIAGMN_11715 0.75 +0.3
2,321,005 - fdoH NIAGMN_11715 0.75 -0.3
2,321,037 + fdoH NIAGMN_11715 0.78 -0.1
2,321,037 + fdoH NIAGMN_11715 0.78 -1.2
2,321,129 + fdoH NIAGMN_11715 0.89 +0.7
2,321,144 + -0.4
2,321,154 + +0.8
2,321,154 + +0.4
2,321,155 - +0.1
2,321,195 + -0.3
2,321,196 - -0.1
2,321,256 - +0.4
2,321,272 + +0.3
2,321,273 - -1.2
2,321,417 - fdoI NIAGMN_11720 0.30 -0.2
2,321,417 - fdoI NIAGMN_11720 0.30 +0.2
2,321,466 + fdoI NIAGMN_11720 0.37 +0.2
2,321,467 - fdoI NIAGMN_11720 0.38 -2.1
2,321,467 - fdoI NIAGMN_11720 0.38 -1.4
2,321,467 - fdoI NIAGMN_11720 0.38 +0.2
2,321,483 - fdoI NIAGMN_11720 0.40 -1.2
2,321,506 + fdoI NIAGMN_11720 0.44 -0.5
2,321,507 - fdoI NIAGMN_11720 0.44 -1.9
2,321,507 - fdoI NIAGMN_11720 0.44 +0.2
2,321,529 + fdoI NIAGMN_11720 0.47 +1.1
2,321,529 + fdoI NIAGMN_11720 0.47 -0.6
2,321,529 + fdoI NIAGMN_11720 0.47 -0.9
2,321,529 + fdoI NIAGMN_11720 0.47 -0.4
2,321,529 + fdoI NIAGMN_11720 0.47 -0.9
2,321,529 + fdoI NIAGMN_11720 0.47 -0.1
2,321,530 - fdoI NIAGMN_11720 0.47 -0.8
2,321,530 - fdoI NIAGMN_11720 0.47 +0.2
2,321,530 - fdoI NIAGMN_11720 0.47 +0.3
2,321,546 + fdoI NIAGMN_11720 0.50 +0.6
2,321,548 + fdoI NIAGMN_11720 0.50 -1.3
2,321,549 - fdoI NIAGMN_11720 0.50 -1.3
2,321,549 - fdoI NIAGMN_11720 0.50 -0.3
2,321,549 - fdoI NIAGMN_11720 0.50 -0.2
2,321,584 + fdoI NIAGMN_11720 0.56 -0.1
2,321,584 + fdoI NIAGMN_11720 0.56 +0.1
2,321,634 - fdoI NIAGMN_11720 0.64 +0.1
2,321,634 - fdoI NIAGMN_11720 0.64 +0.1
2,321,706 + fdoI NIAGMN_11720 0.75 +0.9
2,321,707 - fdoI NIAGMN_11720 0.75 +0.2
2,321,707 - fdoI NIAGMN_11720 0.75 +0.1
2,321,707 - fdoI NIAGMN_11720 0.75 -0.6
2,321,716 + fdoI NIAGMN_11720 0.77 +0.7
2,321,728 + fdoI NIAGMN_11720 0.79 +0.4
2,321,728 + fdoI NIAGMN_11720 0.79 -0.0
2,321,728 + fdoI NIAGMN_11720 0.79 +0.3
2,321,728 + fdoI NIAGMN_11720 0.79 -0.7
2,321,728 + fdoI NIAGMN_11720 0.79 -0.4
2,321,728 + fdoI NIAGMN_11720 0.79 +0.8
2,321,728 + fdoI NIAGMN_11720 0.79 +1.2
2,321,728 + fdoI NIAGMN_11720 0.79 +0.5
2,321,728 + fdoI NIAGMN_11720 0.79 +0.4
2,321,728 + fdoI NIAGMN_11720 0.79 +1.7
2,321,728 + fdoI NIAGMN_11720 0.79 +0.9
2,321,728 + fdoI NIAGMN_11720 0.79 +0.2
2,321,728 + fdoI NIAGMN_11720 0.79 +1.0
2,321,729 - fdoI NIAGMN_11720 0.79 +0.7
2,321,729 - fdoI NIAGMN_11720 0.79 -0.7
2,321,729 - fdoI NIAGMN_11720 0.79 -1.3
2,321,729 - fdoI NIAGMN_11720 0.79 +0.5
2,321,729 - fdoI NIAGMN_11720 0.79 +0.8
2,321,729 - fdoI NIAGMN_11720 0.79 -0.3
2,321,729 - fdoI NIAGMN_11720 0.79 -0.7
2,321,732 + fdoI NIAGMN_11720 0.79 -1.2
2,321,732 + fdoI NIAGMN_11720 0.79 +1.5
2,321,732 + fdoI NIAGMN_11720 0.79 +0.0
2,321,732 + fdoI NIAGMN_11720 0.79 +0.2
2,321,733 - fdoI NIAGMN_11720 0.79 +0.7
2,321,873 + +1.5
2,321,957 + fdhE NIAGMN_11725 0.10 -0.5
2,321,957 + fdhE NIAGMN_11725 0.10 +0.2
2,321,958 - fdhE NIAGMN_11725 0.11 +0.5
2,322,000 + fdhE NIAGMN_11725 0.15 +0.4
2,322,016 + fdhE NIAGMN_11725 0.17 -0.8
2,322,017 - fdhE NIAGMN_11725 0.17 -0.4
2,322,017 - fdhE NIAGMN_11725 0.17 +2.0
2,322,064 + fdhE NIAGMN_11725 0.22 -0.4
2,322,064 + fdhE NIAGMN_11725 0.22 +0.3
2,322,064 + fdhE NIAGMN_11725 0.22 -1.4
2,322,065 - fdhE NIAGMN_11725 0.22 +0.6
2,322,102 + fdhE NIAGMN_11725 0.26 +0.9
2,322,103 - fdhE NIAGMN_11725 0.26 +0.8
2,322,276 + fdhE NIAGMN_11725 0.45 -0.2
2,322,277 - fdhE NIAGMN_11725 0.45 -0.2
2,322,277 - fdhE NIAGMN_11725 0.45 -1.8
2,322,324 + fdhE NIAGMN_11725 0.50 +1.0
2,322,324 + fdhE NIAGMN_11725 0.50 +0.2
2,322,358 + fdhE NIAGMN_11725 0.54 -0.1
2,322,359 - fdhE NIAGMN_11725 0.54 -0.8
2,322,359 - fdhE NIAGMN_11725 0.54 -0.7
2,322,444 + fdhE NIAGMN_11725 0.63 -0.4
2,322,444 + fdhE NIAGMN_11725 0.63 +0.3
2,322,444 + fdhE NIAGMN_11725 0.63 +0.6
2,322,445 - fdhE NIAGMN_11725 0.63 +1.5
2,322,445 - fdhE NIAGMN_11725 0.63 +1.5
2,322,488 + fdhE NIAGMN_11725 0.68 +0.8
2,322,489 - fdhE NIAGMN_11725 0.68 -0.5
2,322,493 + fdhE NIAGMN_11725 0.68 +0.6
2,322,493 + fdhE NIAGMN_11725 0.68 -0.4
2,322,493 + fdhE NIAGMN_11725 0.68 +0.4
2,322,640 + fdhE NIAGMN_11725 0.84 +0.5
2,322,641 - fdhE NIAGMN_11725 0.84 -2.7
2,322,641 - fdhE NIAGMN_11725 0.84 +0.6
2,322,710 + -0.9
2,322,787 + +0.4
2,322,788 - +1.6
2,322,827 + -0.0
2,322,836 + +0.8
2,322,837 - -1.5
2,322,837 - -0.0
2,322,837 - -0.1

Or see this region's nucleotide sequence