Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fdnG and fdoH are separated by 12 nucleotides fdoH and fdoI overlap by 4 nucleotides fdoI and fdhE overlap by 4 nucleotides
NIAGMN_11710: fdnG - formate dehydrogenase-N subunit alpha, at 2,317,266 to 2,320,316
fdnG
NIAGMN_11715: fdoH - formate dehydrogenase O subunit beta, at 2,320,329 to 2,321,231
fdoH
NIAGMN_11720: fdoI - formate dehydrogenase cytochrome b556 subunit, at 2,321,228 to 2,321,863
fdoI
NIAGMN_11725: fdhE - formate dehydrogenase accessory protein FdhE, at 2,321,860 to 2,322,789
fdhE
Position (kb)
2321
2322 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2320.283 kb on + strand at 2320.283 kb on + strand at 2320.328 kb on + strand at 2320.328 kb on + strand at 2320.328 kb on + strand at 2320.328 kb on + strand at 2320.328 kb on + strand at 2320.328 kb on + strand at 2320.328 kb on + strand at 2320.328 kb on + strand at 2320.328 kb on + strand at 2320.328 kb on + strand at 2320.328 kb on + strand at 2320.328 kb on + strand at 2320.329 kb on - strand at 2320.329 kb on - strand at 2320.329 kb on - strand at 2320.329 kb on - strand at 2320.329 kb on - strand at 2320.329 kb on - strand at 2320.329 kb on - strand at 2320.329 kb on - strand at 2320.329 kb on - strand at 2320.349 kb on + strand at 2320.350 kb on - strand at 2320.350 kb on - strand at 2320.350 kb on - strand at 2320.370 kb on + strand at 2320.370 kb on + strand at 2320.455 kb on - strand, within fdoH at 2320.455 kb on - strand, within fdoH at 2320.511 kb on + strand, within fdoH at 2320.525 kb on - strand, within fdoH at 2320.525 kb on - strand, within fdoH at 2320.543 kb on + strand, within fdoH at 2320.544 kb on - strand, within fdoH at 2320.544 kb on - strand, within fdoH at 2320.544 kb on - strand, within fdoH at 2320.628 kb on + strand, within fdoH at 2320.629 kb on - strand, within fdoH at 2320.629 kb on - strand, within fdoH at 2320.629 kb on - strand, within fdoH at 2320.682 kb on + strand, within fdoH at 2320.690 kb on - strand, within fdoH at 2320.801 kb on - strand, within fdoH at 2320.808 kb on + strand, within fdoH at 2320.808 kb on + strand, within fdoH at 2320.808 kb on + strand, within fdoH at 2320.809 kb on - strand, within fdoH at 2320.809 kb on - strand, within fdoH at 2320.809 kb on - strand, within fdoH at 2320.809 kb on - strand, within fdoH at 2320.809 kb on - strand, within fdoH at 2320.809 kb on - strand, within fdoH at 2320.809 kb on - strand, within fdoH at 2320.968 kb on + strand, within fdoH at 2320.969 kb on - strand, within fdoH at 2320.991 kb on + strand, within fdoH at 2321.000 kb on + strand, within fdoH at 2321.000 kb on + strand, within fdoH at 2321.000 kb on + strand, within fdoH at 2321.000 kb on + strand, within fdoH at 2321.000 kb on + strand, within fdoH at 2321.000 kb on + strand, within fdoH at 2321.000 kb on + strand, within fdoH at 2321.000 kb on + strand, within fdoH at 2321.000 kb on + strand, within fdoH at 2321.001 kb on - strand, within fdoH at 2321.001 kb on - strand, within fdoH at 2321.001 kb on - strand, within fdoH at 2321.001 kb on - strand, within fdoH at 2321.001 kb on - strand, within fdoH at 2321.001 kb on - strand, within fdoH at 2321.001 kb on - strand, within fdoH at 2321.004 kb on + strand, within fdoH at 2321.004 kb on + strand, within fdoH at 2321.004 kb on + strand, within fdoH at 2321.004 kb on + strand, within fdoH at 2321.004 kb on + strand, within fdoH at 2321.004 kb on + strand, within fdoH at 2321.005 kb on - strand, within fdoH at 2321.005 kb on - strand, within fdoH at 2321.005 kb on - strand, within fdoH at 2321.005 kb on - strand, within fdoH at 2321.005 kb on - strand, within fdoH at 2321.005 kb on - strand, within fdoH at 2321.005 kb on - strand, within fdoH at 2321.005 kb on - strand, within fdoH at 2321.005 kb on - strand, within fdoH at 2321.037 kb on + strand, within fdoH at 2321.037 kb on + strand, within fdoH at 2321.129 kb on + strand, within fdoH at 2321.144 kb on + strand at 2321.154 kb on + strand at 2321.154 kb on + strand at 2321.155 kb on - strand at 2321.195 kb on + strand at 2321.196 kb on - strand at 2321.256 kb on - strand at 2321.272 kb on + strand at 2321.273 kb on - strand at 2321.417 kb on - strand, within fdoI at 2321.417 kb on - strand, within fdoI at 2321.466 kb on + strand, within fdoI at 2321.467 kb on - strand, within fdoI at 2321.467 kb on - strand, within fdoI at 2321.467 kb on - strand, within fdoI at 2321.483 kb on - strand, within fdoI at 2321.506 kb on + strand, within fdoI at 2321.507 kb on - strand, within fdoI at 2321.507 kb on - strand, within fdoI at 2321.529 kb on + strand, within fdoI at 2321.529 kb on + strand, within fdoI at 2321.529 kb on + strand, within fdoI at 2321.529 kb on + strand, within fdoI at 2321.529 kb on + strand, within fdoI at 2321.529 kb on + strand, within fdoI at 2321.530 kb on - strand, within fdoI at 2321.530 kb on - strand, within fdoI at 2321.530 kb on - strand, within fdoI at 2321.546 kb on + strand, within fdoI at 2321.548 kb on + strand, within fdoI at 2321.549 kb on - strand, within fdoI at 2321.549 kb on - strand, within fdoI at 2321.549 kb on - strand, within fdoI at 2321.584 kb on + strand, within fdoI at 2321.584 kb on + strand, within fdoI at 2321.634 kb on - strand, within fdoI at 2321.634 kb on - strand, within fdoI at 2321.706 kb on + strand, within fdoI at 2321.707 kb on - strand, within fdoI at 2321.707 kb on - strand, within fdoI at 2321.707 kb on - strand, within fdoI at 2321.716 kb on + strand, within fdoI at 2321.728 kb on + strand, within fdoI at 2321.728 kb on + strand, within fdoI at 2321.728 kb on + strand, within fdoI at 2321.728 kb on + strand, within fdoI at 2321.728 kb on + strand, within fdoI at 2321.728 kb on + strand, within fdoI at 2321.728 kb on + strand, within fdoI at 2321.728 kb on + strand, within fdoI at 2321.728 kb on + strand, within fdoI at 2321.728 kb on + strand, within fdoI at 2321.728 kb on + strand, within fdoI at 2321.728 kb on + strand, within fdoI at 2321.728 kb on + strand, within fdoI at 2321.729 kb on - strand, within fdoI at 2321.729 kb on - strand, within fdoI at 2321.729 kb on - strand, within fdoI at 2321.729 kb on - strand, within fdoI at 2321.729 kb on - strand, within fdoI at 2321.729 kb on - strand, within fdoI at 2321.729 kb on - strand, within fdoI at 2321.732 kb on + strand, within fdoI at 2321.732 kb on + strand, within fdoI at 2321.732 kb on + strand, within fdoI at 2321.732 kb on + strand, within fdoI at 2321.733 kb on - strand, within fdoI at 2321.873 kb on + strand at 2321.957 kb on + strand, within fdhE at 2321.957 kb on + strand, within fdhE at 2321.958 kb on - strand, within fdhE at 2322.000 kb on + strand, within fdhE at 2322.016 kb on + strand, within fdhE at 2322.017 kb on - strand, within fdhE at 2322.017 kb on - strand, within fdhE at 2322.064 kb on + strand, within fdhE at 2322.064 kb on + strand, within fdhE at 2322.064 kb on + strand, within fdhE at 2322.065 kb on - strand, within fdhE at 2322.102 kb on + strand, within fdhE at 2322.103 kb on - strand, within fdhE at 2322.276 kb on + strand, within fdhE at 2322.277 kb on - strand, within fdhE at 2322.277 kb on - strand, within fdhE at 2322.324 kb on + strand, within fdhE at 2322.324 kb on + strand, within fdhE at 2322.358 kb on + strand, within fdhE at 2322.359 kb on - strand, within fdhE at 2322.359 kb on - strand, within fdhE at 2322.444 kb on + strand, within fdhE at 2322.444 kb on + strand, within fdhE at 2322.444 kb on + strand, within fdhE at 2322.445 kb on - strand, within fdhE at 2322.445 kb on - strand, within fdhE at 2322.488 kb on + strand, within fdhE at 2322.489 kb on - strand, within fdhE at 2322.493 kb on + strand, within fdhE at 2322.493 kb on + strand, within fdhE at 2322.493 kb on + strand, within fdhE at 2322.640 kb on + strand, within fdhE at 2322.641 kb on - strand, within fdhE at 2322.641 kb on - strand, within fdhE at 2322.710 kb on + strand at 2322.787 kb on + strand at 2322.788 kb on - strand at 2322.827 kb on + strand at 2322.836 kb on + strand at 2322.837 kb on - strand at 2322.837 kb on - strand at 2322.837 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,320,283 + +0.4 2,320,283 + +0.0 2,320,328 + -0.9 2,320,328 + -0.0 2,320,328 + +0.2 2,320,328 + +0.9 2,320,328 + -0.1 2,320,328 + +1.1 2,320,328 + +0.4 2,320,328 + -0.2 2,320,328 + +0.1 2,320,328 + +0.4 2,320,328 + +0.4 2,320,328 + +0.2 2,320,329 - +0.2 2,320,329 - -0.0 2,320,329 - -0.3 2,320,329 - -0.1 2,320,329 - +2.5 2,320,329 - +1.1 2,320,329 - -0.1 2,320,329 - +0.2 2,320,329 - +0.4 2,320,349 + -1.0 2,320,350 - +1.7 2,320,350 - -1.4 2,320,350 - -0.7 2,320,370 + +0.0 2,320,370 + +0.6 2,320,455 - fdoH NIAGMN_11715 0.14 +1.1 2,320,455 - fdoH NIAGMN_11715 0.14 +2.5 2,320,511 + fdoH NIAGMN_11715 0.20 -0.4 2,320,525 - fdoH NIAGMN_11715 0.22 +0.1 2,320,525 - fdoH NIAGMN_11715 0.22 +0.1 2,320,543 + fdoH NIAGMN_11715 0.24 +0.3 2,320,544 - fdoH NIAGMN_11715 0.24 +0.5 2,320,544 - fdoH NIAGMN_11715 0.24 -1.1 2,320,544 - fdoH NIAGMN_11715 0.24 +0.6 2,320,628 + fdoH NIAGMN_11715 0.33 +0.8 2,320,629 - fdoH NIAGMN_11715 0.33 -0.6 2,320,629 - fdoH NIAGMN_11715 0.33 -0.0 2,320,629 - fdoH NIAGMN_11715 0.33 -1.6 2,320,682 + fdoH NIAGMN_11715 0.39 +0.1 2,320,690 - fdoH NIAGMN_11715 0.40 +1.4 2,320,801 - fdoH NIAGMN_11715 0.52 -0.4 2,320,808 + fdoH NIAGMN_11715 0.53 +1.0 2,320,808 + fdoH NIAGMN_11715 0.53 -0.5 2,320,808 + fdoH NIAGMN_11715 0.53 -0.3 2,320,809 - fdoH NIAGMN_11715 0.53 +0.1 2,320,809 - fdoH NIAGMN_11715 0.53 -1.1 2,320,809 - fdoH NIAGMN_11715 0.53 -0.2 2,320,809 - fdoH NIAGMN_11715 0.53 -0.9 2,320,809 - fdoH NIAGMN_11715 0.53 +0.1 2,320,809 - fdoH NIAGMN_11715 0.53 +0.3 2,320,809 - fdoH NIAGMN_11715 0.53 -0.0 2,320,968 + fdoH NIAGMN_11715 0.71 +0.3 2,320,969 - fdoH NIAGMN_11715 0.71 -0.8 2,320,991 + fdoH NIAGMN_11715 0.73 -0.9 2,321,000 + fdoH NIAGMN_11715 0.74 +0.3 2,321,000 + fdoH NIAGMN_11715 0.74 +0.1 2,321,000 + fdoH NIAGMN_11715 0.74 -0.3 2,321,000 + fdoH NIAGMN_11715 0.74 -0.2 2,321,000 + fdoH NIAGMN_11715 0.74 +0.4 2,321,000 + fdoH NIAGMN_11715 0.74 +0.4 2,321,000 + fdoH NIAGMN_11715 0.74 +0.4 2,321,000 + fdoH NIAGMN_11715 0.74 +0.3 2,321,000 + fdoH NIAGMN_11715 0.74 +1.4 2,321,001 - fdoH NIAGMN_11715 0.74 -0.1 2,321,001 - fdoH NIAGMN_11715 0.74 +0.8 2,321,001 - fdoH NIAGMN_11715 0.74 +0.9 2,321,001 - fdoH NIAGMN_11715 0.74 -1.6 2,321,001 - fdoH NIAGMN_11715 0.74 -0.0 2,321,001 - fdoH NIAGMN_11715 0.74 -2.8 2,321,001 - fdoH NIAGMN_11715 0.74 +0.9 2,321,004 + fdoH NIAGMN_11715 0.75 +0.4 2,321,004 + fdoH NIAGMN_11715 0.75 -3.5 2,321,004 + fdoH NIAGMN_11715 0.75 -0.2 2,321,004 + fdoH NIAGMN_11715 0.75 +0.9 2,321,004 + fdoH NIAGMN_11715 0.75 +0.7 2,321,004 + fdoH NIAGMN_11715 0.75 -0.4 2,321,005 - fdoH NIAGMN_11715 0.75 +0.9 2,321,005 - fdoH NIAGMN_11715 0.75 +0.1 2,321,005 - fdoH NIAGMN_11715 0.75 -0.4 2,321,005 - fdoH NIAGMN_11715 0.75 -0.5 2,321,005 - fdoH NIAGMN_11715 0.75 +0.3 2,321,005 - fdoH NIAGMN_11715 0.75 +0.6 2,321,005 - fdoH NIAGMN_11715 0.75 +0.2 2,321,005 - fdoH NIAGMN_11715 0.75 +0.3 2,321,005 - fdoH NIAGMN_11715 0.75 -0.3 2,321,037 + fdoH NIAGMN_11715 0.78 -0.1 2,321,037 + fdoH NIAGMN_11715 0.78 -1.2 2,321,129 + fdoH NIAGMN_11715 0.89 +0.7 2,321,144 + -0.4 2,321,154 + +0.8 2,321,154 + +0.4 2,321,155 - +0.1 2,321,195 + -0.3 2,321,196 - -0.1 2,321,256 - +0.4 2,321,272 + +0.3 2,321,273 - -1.2 2,321,417 - fdoI NIAGMN_11720 0.30 -0.2 2,321,417 - fdoI NIAGMN_11720 0.30 +0.2 2,321,466 + fdoI NIAGMN_11720 0.37 +0.2 2,321,467 - fdoI NIAGMN_11720 0.38 -2.1 2,321,467 - fdoI NIAGMN_11720 0.38 -1.4 2,321,467 - fdoI NIAGMN_11720 0.38 +0.2 2,321,483 - fdoI NIAGMN_11720 0.40 -1.2 2,321,506 + fdoI NIAGMN_11720 0.44 -0.5 2,321,507 - fdoI NIAGMN_11720 0.44 -1.9 2,321,507 - fdoI NIAGMN_11720 0.44 +0.2 2,321,529 + fdoI NIAGMN_11720 0.47 +1.1 2,321,529 + fdoI NIAGMN_11720 0.47 -0.6 2,321,529 + fdoI NIAGMN_11720 0.47 -0.9 2,321,529 + fdoI NIAGMN_11720 0.47 -0.4 2,321,529 + fdoI NIAGMN_11720 0.47 -0.9 2,321,529 + fdoI NIAGMN_11720 0.47 -0.1 2,321,530 - fdoI NIAGMN_11720 0.47 -0.8 2,321,530 - fdoI NIAGMN_11720 0.47 +0.2 2,321,530 - fdoI NIAGMN_11720 0.47 +0.3 2,321,546 + fdoI NIAGMN_11720 0.50 +0.6 2,321,548 + fdoI NIAGMN_11720 0.50 -1.3 2,321,549 - fdoI NIAGMN_11720 0.50 -1.3 2,321,549 - fdoI NIAGMN_11720 0.50 -0.3 2,321,549 - fdoI NIAGMN_11720 0.50 -0.2 2,321,584 + fdoI NIAGMN_11720 0.56 -0.1 2,321,584 + fdoI NIAGMN_11720 0.56 +0.1 2,321,634 - fdoI NIAGMN_11720 0.64 +0.1 2,321,634 - fdoI NIAGMN_11720 0.64 +0.1 2,321,706 + fdoI NIAGMN_11720 0.75 +0.9 2,321,707 - fdoI NIAGMN_11720 0.75 +0.2 2,321,707 - fdoI NIAGMN_11720 0.75 +0.1 2,321,707 - fdoI NIAGMN_11720 0.75 -0.6 2,321,716 + fdoI NIAGMN_11720 0.77 +0.7 2,321,728 + fdoI NIAGMN_11720 0.79 +0.4 2,321,728 + fdoI NIAGMN_11720 0.79 -0.0 2,321,728 + fdoI NIAGMN_11720 0.79 +0.3 2,321,728 + fdoI NIAGMN_11720 0.79 -0.7 2,321,728 + fdoI NIAGMN_11720 0.79 -0.4 2,321,728 + fdoI NIAGMN_11720 0.79 +0.8 2,321,728 + fdoI NIAGMN_11720 0.79 +1.2 2,321,728 + fdoI NIAGMN_11720 0.79 +0.5 2,321,728 + fdoI NIAGMN_11720 0.79 +0.4 2,321,728 + fdoI NIAGMN_11720 0.79 +1.7 2,321,728 + fdoI NIAGMN_11720 0.79 +0.9 2,321,728 + fdoI NIAGMN_11720 0.79 +0.2 2,321,728 + fdoI NIAGMN_11720 0.79 +1.0 2,321,729 - fdoI NIAGMN_11720 0.79 +0.7 2,321,729 - fdoI NIAGMN_11720 0.79 -0.7 2,321,729 - fdoI NIAGMN_11720 0.79 -1.3 2,321,729 - fdoI NIAGMN_11720 0.79 +0.5 2,321,729 - fdoI NIAGMN_11720 0.79 +0.8 2,321,729 - fdoI NIAGMN_11720 0.79 -0.3 2,321,729 - fdoI NIAGMN_11720 0.79 -0.7 2,321,732 + fdoI NIAGMN_11720 0.79 -1.2 2,321,732 + fdoI NIAGMN_11720 0.79 +1.5 2,321,732 + fdoI NIAGMN_11720 0.79 +0.0 2,321,732 + fdoI NIAGMN_11720 0.79 +0.2 2,321,733 - fdoI NIAGMN_11720 0.79 +0.7 2,321,873 + +1.5 2,321,957 + fdhE NIAGMN_11725 0.10 -0.5 2,321,957 + fdhE NIAGMN_11725 0.10 +0.2 2,321,958 - fdhE NIAGMN_11725 0.11 +0.5 2,322,000 + fdhE NIAGMN_11725 0.15 +0.4 2,322,016 + fdhE NIAGMN_11725 0.17 -0.8 2,322,017 - fdhE NIAGMN_11725 0.17 -0.4 2,322,017 - fdhE NIAGMN_11725 0.17 +2.0 2,322,064 + fdhE NIAGMN_11725 0.22 -0.4 2,322,064 + fdhE NIAGMN_11725 0.22 +0.3 2,322,064 + fdhE NIAGMN_11725 0.22 -1.4 2,322,065 - fdhE NIAGMN_11725 0.22 +0.6 2,322,102 + fdhE NIAGMN_11725 0.26 +0.9 2,322,103 - fdhE NIAGMN_11725 0.26 +0.8 2,322,276 + fdhE NIAGMN_11725 0.45 -0.2 2,322,277 - fdhE NIAGMN_11725 0.45 -0.2 2,322,277 - fdhE NIAGMN_11725 0.45 -1.8 2,322,324 + fdhE NIAGMN_11725 0.50 +1.0 2,322,324 + fdhE NIAGMN_11725 0.50 +0.2 2,322,358 + fdhE NIAGMN_11725 0.54 -0.1 2,322,359 - fdhE NIAGMN_11725 0.54 -0.8 2,322,359 - fdhE NIAGMN_11725 0.54 -0.7 2,322,444 + fdhE NIAGMN_11725 0.63 -0.4 2,322,444 + fdhE NIAGMN_11725 0.63 +0.3 2,322,444 + fdhE NIAGMN_11725 0.63 +0.6 2,322,445 - fdhE NIAGMN_11725 0.63 +1.5 2,322,445 - fdhE NIAGMN_11725 0.63 +1.5 2,322,488 + fdhE NIAGMN_11725 0.68 +0.8 2,322,489 - fdhE NIAGMN_11725 0.68 -0.5 2,322,493 + fdhE NIAGMN_11725 0.68 +0.6 2,322,493 + fdhE NIAGMN_11725 0.68 -0.4 2,322,493 + fdhE NIAGMN_11725 0.68 +0.4 2,322,640 + fdhE NIAGMN_11725 0.84 +0.5 2,322,641 - fdhE NIAGMN_11725 0.84 -2.7 2,322,641 - fdhE NIAGMN_11725 0.84 +0.6 2,322,710 + -0.9 2,322,787 + +0.4 2,322,788 - +1.6 2,322,827 + -0.0 2,322,836 + +0.8 2,322,837 - -1.5 2,322,837 - -0.0 2,322,837 - -0.1
Or see this region's nucleotide sequence