Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yijO and frwD overlap by 14 nucleotides frwD and pflC are separated by 1 nucleotides pflC and pflD overlap by 35 nucleotides
NIAGMN_11355: yijO - Uncharacterized HTH-type transcriptional regulator YijO, at 2,246,525 to 2,247,376
yijO
NIAGMN_11360: frwD - PTS fructose-like transporter subunit IIB, at 2,247,363 to 2,247,704
frwD
NIAGMN_11365: pflC - [formate-C-acetyltransferase]-activating enzyme, at 2,247,706 to 2,248,584
pflC
NIAGMN_11370: pflD - formate C-acetyltransferase, at 2,248,550 to 2,250,847
pflD
Position (kb)
2247
2248 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2246.365 kb on + strand at 2246.366 kb on - strand at 2246.380 kb on + strand at 2246.399 kb on - strand at 2246.399 kb on - strand at 2246.415 kb on + strand at 2246.416 kb on - strand at 2246.433 kb on + strand at 2246.433 kb on + strand at 2246.478 kb on - strand at 2246.490 kb on + strand at 2246.491 kb on - strand at 2246.509 kb on + strand at 2246.509 kb on + strand at 2246.509 kb on + strand at 2246.510 kb on - strand at 2246.513 kb on + strand at 2246.521 kb on + strand at 2246.522 kb on - strand at 2246.522 kb on - strand at 2246.528 kb on + strand at 2246.528 kb on + strand at 2246.528 kb on + strand at 2246.528 kb on + strand at 2246.528 kb on + strand at 2246.528 kb on + strand at 2246.529 kb on - strand at 2246.529 kb on - strand at 2246.529 kb on - strand at 2246.529 kb on - strand at 2246.529 kb on - strand at 2246.544 kb on - strand at 2246.544 kb on - strand at 2246.544 kb on - strand at 2246.592 kb on - strand at 2246.630 kb on + strand, within yijO at 2246.631 kb on - strand, within yijO at 2246.703 kb on + strand, within yijO at 2246.704 kb on - strand, within yijO at 2246.704 kb on - strand, within yijO at 2246.704 kb on - strand, within yijO at 2246.723 kb on + strand, within yijO at 2246.723 kb on + strand, within yijO at 2246.723 kb on + strand, within yijO at 2246.724 kb on - strand, within yijO at 2246.724 kb on - strand, within yijO at 2246.724 kb on - strand, within yijO at 2246.770 kb on + strand, within yijO at 2246.770 kb on + strand, within yijO at 2246.771 kb on - strand, within yijO at 2246.773 kb on + strand, within yijO at 2246.773 kb on + strand, within yijO at 2246.773 kb on + strand, within yijO at 2246.774 kb on - strand, within yijO at 2246.780 kb on - strand, within yijO at 2246.886 kb on + strand, within yijO at 2246.887 kb on - strand, within yijO at 2246.887 kb on - strand, within yijO at 2246.887 kb on - strand, within yijO at 2246.887 kb on - strand, within yijO at 2246.901 kb on + strand, within yijO at 2246.956 kb on + strand, within yijO at 2246.957 kb on - strand, within yijO at 2247.044 kb on - strand, within yijO at 2247.053 kb on + strand, within yijO at 2247.053 kb on + strand, within yijO at 2247.054 kb on - strand, within yijO at 2247.055 kb on + strand, within yijO at 2247.055 kb on + strand, within yijO at 2247.056 kb on - strand, within yijO at 2247.069 kb on - strand, within yijO at 2247.110 kb on + strand, within yijO at 2247.110 kb on + strand, within yijO at 2247.111 kb on - strand, within yijO at 2247.111 kb on - strand, within yijO at 2247.111 kb on - strand, within yijO at 2247.111 kb on - strand, within yijO at 2247.111 kb on - strand, within yijO at 2247.113 kb on - strand, within yijO at 2247.113 kb on - strand, within yijO at 2247.113 kb on - strand, within yijO at 2247.125 kb on + strand, within yijO at 2247.125 kb on + strand, within yijO at 2247.125 kb on + strand, within yijO at 2247.125 kb on + strand, within yijO at 2247.125 kb on + strand, within yijO at 2247.126 kb on - strand, within yijO at 2247.126 kb on - strand, within yijO at 2247.126 kb on - strand, within yijO at 2247.202 kb on + strand, within yijO at 2247.202 kb on + strand, within yijO at 2247.202 kb on + strand, within yijO at 2247.203 kb on - strand, within yijO at 2247.203 kb on - strand, within yijO at 2247.221 kb on + strand, within yijO at 2247.221 kb on + strand, within yijO at 2247.221 kb on + strand, within yijO at 2247.222 kb on - strand, within yijO at 2247.234 kb on + strand, within yijO at 2247.234 kb on + strand, within yijO at 2247.275 kb on + strand, within yijO at 2247.276 kb on - strand, within yijO at 2247.276 kb on - strand, within yijO at 2247.374 kb on + strand at 2247.374 kb on + strand at 2247.375 kb on - strand at 2247.424 kb on - strand, within frwD at 2247.424 kb on - strand, within frwD at 2247.424 kb on - strand, within frwD at 2247.451 kb on + strand, within frwD at 2247.451 kb on + strand, within frwD at 2247.452 kb on - strand, within frwD at 2247.452 kb on - strand, within frwD at 2247.452 kb on - strand, within frwD at 2247.452 kb on - strand, within frwD at 2247.452 kb on - strand, within frwD at 2247.469 kb on + strand, within frwD at 2247.516 kb on - strand, within frwD at 2247.650 kb on + strand, within frwD at 2247.650 kb on + strand, within frwD at 2247.650 kb on + strand, within frwD at 2247.650 kb on + strand, within frwD at 2247.650 kb on + strand, within frwD at 2247.650 kb on + strand, within frwD at 2247.650 kb on + strand, within frwD at 2247.650 kb on + strand, within frwD at 2247.650 kb on + strand, within frwD at 2247.650 kb on + strand, within frwD at 2247.650 kb on + strand, within frwD at 2247.651 kb on - strand, within frwD at 2247.651 kb on - strand, within frwD at 2247.651 kb on - strand, within frwD at 2247.651 kb on - strand, within frwD at 2247.651 kb on - strand, within frwD at 2247.651 kb on - strand, within frwD at 2247.651 kb on - strand, within frwD at 2247.651 kb on - strand, within frwD at 2247.651 kb on - strand, within frwD at 2247.652 kb on + strand, within frwD at 2247.652 kb on + strand, within frwD at 2247.652 kb on + strand, within frwD at 2247.652 kb on + strand, within frwD at 2247.652 kb on + strand, within frwD at 2247.652 kb on + strand, within frwD at 2247.652 kb on + strand, within frwD at 2247.652 kb on + strand, within frwD at 2247.652 kb on + strand, within frwD at 2247.652 kb on + strand, within frwD at 2247.652 kb on + strand, within frwD at 2247.652 kb on + strand, within frwD at 2247.652 kb on + strand, within frwD at 2247.652 kb on + strand, within frwD at 2247.652 kb on + strand, within frwD at 2247.652 kb on + strand, within frwD at 2247.652 kb on + strand, within frwD at 2247.652 kb on + strand, within frwD at 2247.652 kb on + strand, within frwD at 2247.652 kb on + strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.653 kb on - strand, within frwD at 2247.656 kb on + strand, within frwD at 2247.656 kb on + strand, within frwD at 2247.656 kb on + strand, within frwD at 2247.656 kb on + strand, within frwD at 2247.656 kb on + strand, within frwD at 2247.656 kb on + strand, within frwD at 2247.656 kb on + strand, within frwD at 2247.657 kb on - strand, within frwD at 2247.657 kb on - strand, within frwD at 2247.657 kb on - strand, within frwD at 2247.657 kb on - strand, within frwD at 2247.657 kb on - strand, within frwD at 2247.657 kb on - strand, within frwD at 2247.657 kb on - strand, within frwD at 2247.673 kb on - strand at 2247.697 kb on + strand at 2247.698 kb on - strand at 2247.708 kb on - strand at 2247.854 kb on - strand, within pflC at 2247.890 kb on - strand, within pflC at 2247.890 kb on - strand, within pflC at 2247.947 kb on - strand, within pflC at 2248.468 kb on - strand, within pflC at 2248.468 kb on - strand, within pflC at 2248.468 kb on - strand, within pflC at 2248.496 kb on + strand, within pflC at 2248.497 kb on - strand at 2248.551 kb on + strand at 2248.551 kb on + strand at 2248.552 kb on - strand at 2248.653 kb on + strand at 2248.654 kb on - strand at 2248.654 kb on - strand at 2248.654 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,246,365 + +0.0 2,246,366 - +1.0 2,246,380 + -0.2 2,246,399 - -0.7 2,246,399 - +1.1 2,246,415 + -2.7 2,246,416 - +0.1 2,246,433 + -0.0 2,246,433 + +0.0 2,246,478 - +0.4 2,246,490 + -0.4 2,246,491 - -1.9 2,246,509 + -0.3 2,246,509 + -0.4 2,246,509 + +0.3 2,246,510 - +0.2 2,246,513 + -0.5 2,246,521 + +0.4 2,246,522 - +0.1 2,246,522 - -0.7 2,246,528 + +0.6 2,246,528 + +0.5 2,246,528 + -0.4 2,246,528 + -0.3 2,246,528 + +0.4 2,246,528 + -1.0 2,246,529 - +0.4 2,246,529 - -1.3 2,246,529 - -1.3 2,246,529 - -1.2 2,246,529 - -0.7 2,246,544 - +0.3 2,246,544 - +0.1 2,246,544 - -0.2 2,246,592 - -1.3 2,246,630 + yijO NIAGMN_11355 0.12 +0.3 2,246,631 - yijO NIAGMN_11355 0.12 -0.6 2,246,703 + yijO NIAGMN_11355 0.21 +0.2 2,246,704 - yijO NIAGMN_11355 0.21 -0.1 2,246,704 - yijO NIAGMN_11355 0.21 +0.2 2,246,704 - yijO NIAGMN_11355 0.21 +0.5 2,246,723 + yijO NIAGMN_11355 0.23 -0.9 2,246,723 + yijO NIAGMN_11355 0.23 +0.1 2,246,723 + yijO NIAGMN_11355 0.23 +0.4 2,246,724 - yijO NIAGMN_11355 0.23 +0.6 2,246,724 - yijO NIAGMN_11355 0.23 -0.5 2,246,724 - yijO NIAGMN_11355 0.23 -1.7 2,246,770 + yijO NIAGMN_11355 0.29 +0.3 2,246,770 + yijO NIAGMN_11355 0.29 -0.3 2,246,771 - yijO NIAGMN_11355 0.29 +1.4 2,246,773 + yijO NIAGMN_11355 0.29 +0.4 2,246,773 + yijO NIAGMN_11355 0.29 +0.5 2,246,773 + yijO NIAGMN_11355 0.29 +0.9 2,246,774 - yijO NIAGMN_11355 0.29 -0.1 2,246,780 - yijO NIAGMN_11355 0.30 -0.1 2,246,886 + yijO NIAGMN_11355 0.42 +0.4 2,246,887 - yijO NIAGMN_11355 0.42 +0.6 2,246,887 - yijO NIAGMN_11355 0.42 -2.2 2,246,887 - yijO NIAGMN_11355 0.42 -1.1 2,246,887 - yijO NIAGMN_11355 0.42 +0.1 2,246,901 + yijO NIAGMN_11355 0.44 +1.0 2,246,956 + yijO NIAGMN_11355 0.51 +1.1 2,246,957 - yijO NIAGMN_11355 0.51 +0.5 2,247,044 - yijO NIAGMN_11355 0.61 +0.2 2,247,053 + yijO NIAGMN_11355 0.62 +1.3 2,247,053 + yijO NIAGMN_11355 0.62 -0.4 2,247,054 - yijO NIAGMN_11355 0.62 -0.0 2,247,055 + yijO NIAGMN_11355 0.62 +0.3 2,247,055 + yijO NIAGMN_11355 0.62 +0.5 2,247,056 - yijO NIAGMN_11355 0.62 -3.1 2,247,069 - yijO NIAGMN_11355 0.64 +0.1 2,247,110 + yijO NIAGMN_11355 0.69 -1.1 2,247,110 + yijO NIAGMN_11355 0.69 -3.1 2,247,111 - yijO NIAGMN_11355 0.69 -0.0 2,247,111 - yijO NIAGMN_11355 0.69 -0.3 2,247,111 - yijO NIAGMN_11355 0.69 -1.0 2,247,111 - yijO NIAGMN_11355 0.69 -0.6 2,247,111 - yijO NIAGMN_11355 0.69 +0.5 2,247,113 - yijO NIAGMN_11355 0.69 -0.4 2,247,113 - yijO NIAGMN_11355 0.69 -0.1 2,247,113 - yijO NIAGMN_11355 0.69 -0.2 2,247,125 + yijO NIAGMN_11355 0.70 -0.1 2,247,125 + yijO NIAGMN_11355 0.70 -0.3 2,247,125 + yijO NIAGMN_11355 0.70 +1.1 2,247,125 + yijO NIAGMN_11355 0.70 +0.7 2,247,125 + yijO NIAGMN_11355 0.70 +0.1 2,247,126 - yijO NIAGMN_11355 0.71 -1.1 2,247,126 - yijO NIAGMN_11355 0.71 -0.7 2,247,126 - yijO NIAGMN_11355 0.71 -2.6 2,247,202 + yijO NIAGMN_11355 0.79 +0.4 2,247,202 + yijO NIAGMN_11355 0.79 +0.7 2,247,202 + yijO NIAGMN_11355 0.79 +1.1 2,247,203 - yijO NIAGMN_11355 0.80 +2.3 2,247,203 - yijO NIAGMN_11355 0.80 -0.6 2,247,221 + yijO NIAGMN_11355 0.82 -0.1 2,247,221 + yijO NIAGMN_11355 0.82 +0.5 2,247,221 + yijO NIAGMN_11355 0.82 +1.8 2,247,222 - yijO NIAGMN_11355 0.82 +1.5 2,247,234 + yijO NIAGMN_11355 0.83 +0.8 2,247,234 + yijO NIAGMN_11355 0.83 -1.0 2,247,275 + yijO NIAGMN_11355 0.88 -0.0 2,247,276 - yijO NIAGMN_11355 0.88 -0.6 2,247,276 - yijO NIAGMN_11355 0.88 +0.9 2,247,374 + +0.5 2,247,374 + -1.9 2,247,375 - -0.3 2,247,424 - frwD NIAGMN_11360 0.18 -0.4 2,247,424 - frwD NIAGMN_11360 0.18 -0.1 2,247,424 - frwD NIAGMN_11360 0.18 +0.6 2,247,451 + frwD NIAGMN_11360 0.26 -0.2 2,247,451 + frwD NIAGMN_11360 0.26 +0.0 2,247,452 - frwD NIAGMN_11360 0.26 -1.4 2,247,452 - frwD NIAGMN_11360 0.26 +0.2 2,247,452 - frwD NIAGMN_11360 0.26 +0.4 2,247,452 - frwD NIAGMN_11360 0.26 -0.2 2,247,452 - frwD NIAGMN_11360 0.26 +1.2 2,247,469 + frwD NIAGMN_11360 0.31 -1.1 2,247,516 - frwD NIAGMN_11360 0.45 +0.1 2,247,650 + frwD NIAGMN_11360 0.84 +0.1 2,247,650 + frwD NIAGMN_11360 0.84 +0.1 2,247,650 + frwD NIAGMN_11360 0.84 +0.5 2,247,650 + frwD NIAGMN_11360 0.84 +0.6 2,247,650 + frwD NIAGMN_11360 0.84 +0.3 2,247,650 + frwD NIAGMN_11360 0.84 +0.1 2,247,650 + frwD NIAGMN_11360 0.84 -0.7 2,247,650 + frwD NIAGMN_11360 0.84 +0.1 2,247,650 + frwD NIAGMN_11360 0.84 -0.3 2,247,650 + frwD NIAGMN_11360 0.84 +0.3 2,247,650 + frwD NIAGMN_11360 0.84 -0.3 2,247,651 - frwD NIAGMN_11360 0.84 -0.2 2,247,651 - frwD NIAGMN_11360 0.84 -0.7 2,247,651 - frwD NIAGMN_11360 0.84 -0.5 2,247,651 - frwD NIAGMN_11360 0.84 +1.6 2,247,651 - frwD NIAGMN_11360 0.84 +0.8 2,247,651 - frwD NIAGMN_11360 0.84 -1.4 2,247,651 - frwD NIAGMN_11360 0.84 +0.0 2,247,651 - frwD NIAGMN_11360 0.84 -1.0 2,247,651 - frwD NIAGMN_11360 0.84 -0.8 2,247,652 + frwD NIAGMN_11360 0.85 +0.2 2,247,652 + frwD NIAGMN_11360 0.85 +0.2 2,247,652 + frwD NIAGMN_11360 0.85 -0.5 2,247,652 + frwD NIAGMN_11360 0.85 -1.4 2,247,652 + frwD NIAGMN_11360 0.85 +1.6 2,247,652 + frwD NIAGMN_11360 0.85 +0.5 2,247,652 + frwD NIAGMN_11360 0.85 -2.4 2,247,652 + frwD NIAGMN_11360 0.85 -0.1 2,247,652 + frwD NIAGMN_11360 0.85 +0.1 2,247,652 + frwD NIAGMN_11360 0.85 -1.0 2,247,652 + frwD NIAGMN_11360 0.85 +0.0 2,247,652 + frwD NIAGMN_11360 0.85 +1.3 2,247,652 + frwD NIAGMN_11360 0.85 -0.0 2,247,652 + frwD NIAGMN_11360 0.85 -0.1 2,247,652 + frwD NIAGMN_11360 0.85 -0.8 2,247,652 + frwD NIAGMN_11360 0.85 -0.0 2,247,652 + frwD NIAGMN_11360 0.85 +0.1 2,247,652 + frwD NIAGMN_11360 0.85 +0.5 2,247,652 + frwD NIAGMN_11360 0.85 -0.4 2,247,652 + frwD NIAGMN_11360 0.85 +0.2 2,247,653 - frwD NIAGMN_11360 0.85 +0.8 2,247,653 - frwD NIAGMN_11360 0.85 -1.5 2,247,653 - frwD NIAGMN_11360 0.85 +0.4 2,247,653 - frwD NIAGMN_11360 0.85 +0.8 2,247,653 - frwD NIAGMN_11360 0.85 -0.6 2,247,653 - frwD NIAGMN_11360 0.85 -1.7 2,247,653 - frwD NIAGMN_11360 0.85 +0.5 2,247,653 - frwD NIAGMN_11360 0.85 +0.4 2,247,653 - frwD NIAGMN_11360 0.85 -0.8 2,247,653 - frwD NIAGMN_11360 0.85 +0.1 2,247,653 - frwD NIAGMN_11360 0.85 +0.5 2,247,653 - frwD NIAGMN_11360 0.85 -0.9 2,247,653 - frwD NIAGMN_11360 0.85 -1.0 2,247,653 - frwD NIAGMN_11360 0.85 -0.5 2,247,653 - frwD NIAGMN_11360 0.85 -1.3 2,247,653 - frwD NIAGMN_11360 0.85 +1.0 2,247,653 - frwD NIAGMN_11360 0.85 +0.6 2,247,653 - frwD NIAGMN_11360 0.85 -0.4 2,247,653 - frwD NIAGMN_11360 0.85 -1.2 2,247,653 - frwD NIAGMN_11360 0.85 -0.1 2,247,653 - frwD NIAGMN_11360 0.85 +0.4 2,247,653 - frwD NIAGMN_11360 0.85 +0.4 2,247,653 - frwD NIAGMN_11360 0.85 -0.3 2,247,653 - frwD NIAGMN_11360 0.85 -0.1 2,247,653 - frwD NIAGMN_11360 0.85 +0.2 2,247,653 - frwD NIAGMN_11360 0.85 -0.2 2,247,656 + frwD NIAGMN_11360 0.86 -0.3 2,247,656 + frwD NIAGMN_11360 0.86 +0.6 2,247,656 + frwD NIAGMN_11360 0.86 +0.5 2,247,656 + frwD NIAGMN_11360 0.86 -0.0 2,247,656 + frwD NIAGMN_11360 0.86 -0.2 2,247,656 + frwD NIAGMN_11360 0.86 -0.6 2,247,656 + frwD NIAGMN_11360 0.86 +0.5 2,247,657 - frwD NIAGMN_11360 0.86 -0.4 2,247,657 - frwD NIAGMN_11360 0.86 -1.5 2,247,657 - frwD NIAGMN_11360 0.86 -0.9 2,247,657 - frwD NIAGMN_11360 0.86 +0.7 2,247,657 - frwD NIAGMN_11360 0.86 -1.6 2,247,657 - frwD NIAGMN_11360 0.86 +2.6 2,247,657 - frwD NIAGMN_11360 0.86 +0.0 2,247,673 - -0.1 2,247,697 + -0.5 2,247,698 - -0.0 2,247,708 - +0.4 2,247,854 - pflC NIAGMN_11365 0.17 -2.5 2,247,890 - pflC NIAGMN_11365 0.21 +0.5 2,247,890 - pflC NIAGMN_11365 0.21 -1.0 2,247,947 - pflC NIAGMN_11365 0.27 +1.1 2,248,468 - pflC NIAGMN_11365 0.87 +0.3 2,248,468 - pflC NIAGMN_11365 0.87 +0.5 2,248,468 - pflC NIAGMN_11365 0.87 +1.7 2,248,496 + pflC NIAGMN_11365 0.90 -0.6 2,248,497 - -1.6 2,248,551 + +0.3 2,248,551 + -0.0 2,248,552 - +1.2 2,248,653 + +0.8 2,248,654 - +0.1 2,248,654 - +0.2 2,248,654 - +1.0
Or see this region's nucleotide sequence