Strain Fitness in Escherichia coli ECRC102 around NIAGMN_11360

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyijO and frwD overlap by 14 nucleotidesfrwD and pflC are separated by 1 nucleotidespflC and pflD overlap by 35 nucleotides NIAGMN_11355: yijO - Uncharacterized HTH-type transcriptional regulator YijO, at 2,246,525 to 2,247,376 yijO NIAGMN_11360: frwD - PTS fructose-like transporter subunit IIB, at 2,247,363 to 2,247,704 frwD NIAGMN_11365: pflC - [formate-C-acetyltransferase]-activating enzyme, at 2,247,706 to 2,248,584 pflC NIAGMN_11370: pflD - formate C-acetyltransferase, at 2,248,550 to 2,250,847 pflD Position (kb) 2247 2248Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2246.365 kb on + strandat 2246.366 kb on - strandat 2246.380 kb on + strandat 2246.399 kb on - strandat 2246.399 kb on - strandat 2246.415 kb on + strandat 2246.416 kb on - strandat 2246.433 kb on + strandat 2246.433 kb on + strandat 2246.478 kb on - strandat 2246.490 kb on + strandat 2246.491 kb on - strandat 2246.509 kb on + strandat 2246.509 kb on + strandat 2246.509 kb on + strandat 2246.510 kb on - strandat 2246.513 kb on + strandat 2246.521 kb on + strandat 2246.522 kb on - strandat 2246.522 kb on - strandat 2246.528 kb on + strandat 2246.528 kb on + strandat 2246.528 kb on + strandat 2246.528 kb on + strandat 2246.528 kb on + strandat 2246.528 kb on + strandat 2246.529 kb on - strandat 2246.529 kb on - strandat 2246.529 kb on - strandat 2246.529 kb on - strandat 2246.529 kb on - strandat 2246.544 kb on - strandat 2246.544 kb on - strandat 2246.544 kb on - strandat 2246.592 kb on - strandat 2246.630 kb on + strand, within yijOat 2246.631 kb on - strand, within yijOat 2246.703 kb on + strand, within yijOat 2246.704 kb on - strand, within yijOat 2246.704 kb on - strand, within yijOat 2246.704 kb on - strand, within yijOat 2246.723 kb on + strand, within yijOat 2246.723 kb on + strand, within yijOat 2246.723 kb on + strand, within yijOat 2246.724 kb on - strand, within yijOat 2246.724 kb on - strand, within yijOat 2246.724 kb on - strand, within yijOat 2246.770 kb on + strand, within yijOat 2246.770 kb on + strand, within yijOat 2246.771 kb on - strand, within yijOat 2246.773 kb on + strand, within yijOat 2246.773 kb on + strand, within yijOat 2246.773 kb on + strand, within yijOat 2246.774 kb on - strand, within yijOat 2246.780 kb on - strand, within yijOat 2246.886 kb on + strand, within yijOat 2246.887 kb on - strand, within yijOat 2246.887 kb on - strand, within yijOat 2246.887 kb on - strand, within yijOat 2246.887 kb on - strand, within yijOat 2246.901 kb on + strand, within yijOat 2246.956 kb on + strand, within yijOat 2246.957 kb on - strand, within yijOat 2247.044 kb on - strand, within yijOat 2247.053 kb on + strand, within yijOat 2247.053 kb on + strand, within yijOat 2247.054 kb on - strand, within yijOat 2247.055 kb on + strand, within yijOat 2247.055 kb on + strand, within yijOat 2247.056 kb on - strand, within yijOat 2247.069 kb on - strand, within yijOat 2247.110 kb on + strand, within yijOat 2247.110 kb on + strand, within yijOat 2247.111 kb on - strand, within yijOat 2247.111 kb on - strand, within yijOat 2247.111 kb on - strand, within yijOat 2247.111 kb on - strand, within yijOat 2247.111 kb on - strand, within yijOat 2247.113 kb on - strand, within yijOat 2247.113 kb on - strand, within yijOat 2247.113 kb on - strand, within yijOat 2247.125 kb on + strand, within yijOat 2247.125 kb on + strand, within yijOat 2247.125 kb on + strand, within yijOat 2247.125 kb on + strand, within yijOat 2247.125 kb on + strand, within yijOat 2247.126 kb on - strand, within yijOat 2247.126 kb on - strand, within yijOat 2247.126 kb on - strand, within yijOat 2247.202 kb on + strand, within yijOat 2247.202 kb on + strand, within yijOat 2247.202 kb on + strand, within yijOat 2247.203 kb on - strand, within yijOat 2247.203 kb on - strand, within yijOat 2247.221 kb on + strand, within yijOat 2247.221 kb on + strand, within yijOat 2247.221 kb on + strand, within yijOat 2247.222 kb on - strand, within yijOat 2247.234 kb on + strand, within yijOat 2247.234 kb on + strand, within yijOat 2247.275 kb on + strand, within yijOat 2247.276 kb on - strand, within yijOat 2247.276 kb on - strand, within yijOat 2247.374 kb on + strandat 2247.374 kb on + strandat 2247.375 kb on - strandat 2247.424 kb on - strand, within frwDat 2247.424 kb on - strand, within frwDat 2247.424 kb on - strand, within frwDat 2247.451 kb on + strand, within frwDat 2247.451 kb on + strand, within frwDat 2247.452 kb on - strand, within frwDat 2247.452 kb on - strand, within frwDat 2247.452 kb on - strand, within frwDat 2247.452 kb on - strand, within frwDat 2247.452 kb on - strand, within frwDat 2247.469 kb on + strand, within frwDat 2247.516 kb on - strand, within frwDat 2247.650 kb on + strand, within frwDat 2247.650 kb on + strand, within frwDat 2247.650 kb on + strand, within frwDat 2247.650 kb on + strand, within frwDat 2247.650 kb on + strand, within frwDat 2247.650 kb on + strand, within frwDat 2247.650 kb on + strand, within frwDat 2247.650 kb on + strand, within frwDat 2247.650 kb on + strand, within frwDat 2247.650 kb on + strand, within frwDat 2247.650 kb on + strand, within frwDat 2247.651 kb on - strand, within frwDat 2247.651 kb on - strand, within frwDat 2247.651 kb on - strand, within frwDat 2247.651 kb on - strand, within frwDat 2247.651 kb on - strand, within frwDat 2247.651 kb on - strand, within frwDat 2247.651 kb on - strand, within frwDat 2247.651 kb on - strand, within frwDat 2247.651 kb on - strand, within frwDat 2247.652 kb on + strand, within frwDat 2247.652 kb on + strand, within frwDat 2247.652 kb on + strand, within frwDat 2247.652 kb on + strand, within frwDat 2247.652 kb on + strand, within frwDat 2247.652 kb on + strand, within frwDat 2247.652 kb on + strand, within frwDat 2247.652 kb on + strand, within frwDat 2247.652 kb on + strand, within frwDat 2247.652 kb on + strand, within frwDat 2247.652 kb on + strand, within frwDat 2247.652 kb on + strand, within frwDat 2247.652 kb on + strand, within frwDat 2247.652 kb on + strand, within frwDat 2247.652 kb on + strand, within frwDat 2247.652 kb on + strand, within frwDat 2247.652 kb on + strand, within frwDat 2247.652 kb on + strand, within frwDat 2247.652 kb on + strand, within frwDat 2247.652 kb on + strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.653 kb on - strand, within frwDat 2247.656 kb on + strand, within frwDat 2247.656 kb on + strand, within frwDat 2247.656 kb on + strand, within frwDat 2247.656 kb on + strand, within frwDat 2247.656 kb on + strand, within frwDat 2247.656 kb on + strand, within frwDat 2247.656 kb on + strand, within frwDat 2247.657 kb on - strand, within frwDat 2247.657 kb on - strand, within frwDat 2247.657 kb on - strand, within frwDat 2247.657 kb on - strand, within frwDat 2247.657 kb on - strand, within frwDat 2247.657 kb on - strand, within frwDat 2247.657 kb on - strand, within frwDat 2247.673 kb on - strandat 2247.697 kb on + strandat 2247.698 kb on - strandat 2247.708 kb on - strandat 2247.854 kb on - strand, within pflCat 2247.890 kb on - strand, within pflCat 2247.890 kb on - strand, within pflCat 2247.947 kb on - strand, within pflCat 2248.468 kb on - strand, within pflCat 2248.468 kb on - strand, within pflCat 2248.468 kb on - strand, within pflCat 2248.496 kb on + strand, within pflCat 2248.497 kb on - strandat 2248.551 kb on + strandat 2248.551 kb on + strandat 2248.552 kb on - strandat 2248.653 kb on + strandat 2248.654 kb on - strandat 2248.654 kb on - strandat 2248.654 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,246,365 + +0.0
2,246,366 - +1.0
2,246,380 + -0.2
2,246,399 - -0.7
2,246,399 - +1.1
2,246,415 + -2.7
2,246,416 - +0.1
2,246,433 + -0.0
2,246,433 + +0.0
2,246,478 - +0.4
2,246,490 + -0.4
2,246,491 - -1.9
2,246,509 + -0.3
2,246,509 + -0.4
2,246,509 + +0.3
2,246,510 - +0.2
2,246,513 + -0.5
2,246,521 + +0.4
2,246,522 - +0.1
2,246,522 - -0.7
2,246,528 + +0.6
2,246,528 + +0.5
2,246,528 + -0.4
2,246,528 + -0.3
2,246,528 + +0.4
2,246,528 + -1.0
2,246,529 - +0.4
2,246,529 - -1.3
2,246,529 - -1.3
2,246,529 - -1.2
2,246,529 - -0.7
2,246,544 - +0.3
2,246,544 - +0.1
2,246,544 - -0.2
2,246,592 - -1.3
2,246,630 + yijO NIAGMN_11355 0.12 +0.3
2,246,631 - yijO NIAGMN_11355 0.12 -0.6
2,246,703 + yijO NIAGMN_11355 0.21 +0.2
2,246,704 - yijO NIAGMN_11355 0.21 -0.1
2,246,704 - yijO NIAGMN_11355 0.21 +0.2
2,246,704 - yijO NIAGMN_11355 0.21 +0.5
2,246,723 + yijO NIAGMN_11355 0.23 -0.9
2,246,723 + yijO NIAGMN_11355 0.23 +0.1
2,246,723 + yijO NIAGMN_11355 0.23 +0.4
2,246,724 - yijO NIAGMN_11355 0.23 +0.6
2,246,724 - yijO NIAGMN_11355 0.23 -0.5
2,246,724 - yijO NIAGMN_11355 0.23 -1.7
2,246,770 + yijO NIAGMN_11355 0.29 +0.3
2,246,770 + yijO NIAGMN_11355 0.29 -0.3
2,246,771 - yijO NIAGMN_11355 0.29 +1.4
2,246,773 + yijO NIAGMN_11355 0.29 +0.4
2,246,773 + yijO NIAGMN_11355 0.29 +0.5
2,246,773 + yijO NIAGMN_11355 0.29 +0.9
2,246,774 - yijO NIAGMN_11355 0.29 -0.1
2,246,780 - yijO NIAGMN_11355 0.30 -0.1
2,246,886 + yijO NIAGMN_11355 0.42 +0.4
2,246,887 - yijO NIAGMN_11355 0.42 +0.6
2,246,887 - yijO NIAGMN_11355 0.42 -2.2
2,246,887 - yijO NIAGMN_11355 0.42 -1.1
2,246,887 - yijO NIAGMN_11355 0.42 +0.1
2,246,901 + yijO NIAGMN_11355 0.44 +1.0
2,246,956 + yijO NIAGMN_11355 0.51 +1.1
2,246,957 - yijO NIAGMN_11355 0.51 +0.5
2,247,044 - yijO NIAGMN_11355 0.61 +0.2
2,247,053 + yijO NIAGMN_11355 0.62 +1.3
2,247,053 + yijO NIAGMN_11355 0.62 -0.4
2,247,054 - yijO NIAGMN_11355 0.62 -0.0
2,247,055 + yijO NIAGMN_11355 0.62 +0.3
2,247,055 + yijO NIAGMN_11355 0.62 +0.5
2,247,056 - yijO NIAGMN_11355 0.62 -3.1
2,247,069 - yijO NIAGMN_11355 0.64 +0.1
2,247,110 + yijO NIAGMN_11355 0.69 -1.1
2,247,110 + yijO NIAGMN_11355 0.69 -3.1
2,247,111 - yijO NIAGMN_11355 0.69 -0.0
2,247,111 - yijO NIAGMN_11355 0.69 -0.3
2,247,111 - yijO NIAGMN_11355 0.69 -1.0
2,247,111 - yijO NIAGMN_11355 0.69 -0.6
2,247,111 - yijO NIAGMN_11355 0.69 +0.5
2,247,113 - yijO NIAGMN_11355 0.69 -0.4
2,247,113 - yijO NIAGMN_11355 0.69 -0.1
2,247,113 - yijO NIAGMN_11355 0.69 -0.2
2,247,125 + yijO NIAGMN_11355 0.70 -0.1
2,247,125 + yijO NIAGMN_11355 0.70 -0.3
2,247,125 + yijO NIAGMN_11355 0.70 +1.1
2,247,125 + yijO NIAGMN_11355 0.70 +0.7
2,247,125 + yijO NIAGMN_11355 0.70 +0.1
2,247,126 - yijO NIAGMN_11355 0.71 -1.1
2,247,126 - yijO NIAGMN_11355 0.71 -0.7
2,247,126 - yijO NIAGMN_11355 0.71 -2.6
2,247,202 + yijO NIAGMN_11355 0.79 +0.4
2,247,202 + yijO NIAGMN_11355 0.79 +0.7
2,247,202 + yijO NIAGMN_11355 0.79 +1.1
2,247,203 - yijO NIAGMN_11355 0.80 +2.3
2,247,203 - yijO NIAGMN_11355 0.80 -0.6
2,247,221 + yijO NIAGMN_11355 0.82 -0.1
2,247,221 + yijO NIAGMN_11355 0.82 +0.5
2,247,221 + yijO NIAGMN_11355 0.82 +1.8
2,247,222 - yijO NIAGMN_11355 0.82 +1.5
2,247,234 + yijO NIAGMN_11355 0.83 +0.8
2,247,234 + yijO NIAGMN_11355 0.83 -1.0
2,247,275 + yijO NIAGMN_11355 0.88 -0.0
2,247,276 - yijO NIAGMN_11355 0.88 -0.6
2,247,276 - yijO NIAGMN_11355 0.88 +0.9
2,247,374 + +0.5
2,247,374 + -1.9
2,247,375 - -0.3
2,247,424 - frwD NIAGMN_11360 0.18 -0.4
2,247,424 - frwD NIAGMN_11360 0.18 -0.1
2,247,424 - frwD NIAGMN_11360 0.18 +0.6
2,247,451 + frwD NIAGMN_11360 0.26 -0.2
2,247,451 + frwD NIAGMN_11360 0.26 +0.0
2,247,452 - frwD NIAGMN_11360 0.26 -1.4
2,247,452 - frwD NIAGMN_11360 0.26 +0.2
2,247,452 - frwD NIAGMN_11360 0.26 +0.4
2,247,452 - frwD NIAGMN_11360 0.26 -0.2
2,247,452 - frwD NIAGMN_11360 0.26 +1.2
2,247,469 + frwD NIAGMN_11360 0.31 -1.1
2,247,516 - frwD NIAGMN_11360 0.45 +0.1
2,247,650 + frwD NIAGMN_11360 0.84 +0.1
2,247,650 + frwD NIAGMN_11360 0.84 +0.1
2,247,650 + frwD NIAGMN_11360 0.84 +0.5
2,247,650 + frwD NIAGMN_11360 0.84 +0.6
2,247,650 + frwD NIAGMN_11360 0.84 +0.3
2,247,650 + frwD NIAGMN_11360 0.84 +0.1
2,247,650 + frwD NIAGMN_11360 0.84 -0.7
2,247,650 + frwD NIAGMN_11360 0.84 +0.1
2,247,650 + frwD NIAGMN_11360 0.84 -0.3
2,247,650 + frwD NIAGMN_11360 0.84 +0.3
2,247,650 + frwD NIAGMN_11360 0.84 -0.3
2,247,651 - frwD NIAGMN_11360 0.84 -0.2
2,247,651 - frwD NIAGMN_11360 0.84 -0.7
2,247,651 - frwD NIAGMN_11360 0.84 -0.5
2,247,651 - frwD NIAGMN_11360 0.84 +1.6
2,247,651 - frwD NIAGMN_11360 0.84 +0.8
2,247,651 - frwD NIAGMN_11360 0.84 -1.4
2,247,651 - frwD NIAGMN_11360 0.84 +0.0
2,247,651 - frwD NIAGMN_11360 0.84 -1.0
2,247,651 - frwD NIAGMN_11360 0.84 -0.8
2,247,652 + frwD NIAGMN_11360 0.85 +0.2
2,247,652 + frwD NIAGMN_11360 0.85 +0.2
2,247,652 + frwD NIAGMN_11360 0.85 -0.5
2,247,652 + frwD NIAGMN_11360 0.85 -1.4
2,247,652 + frwD NIAGMN_11360 0.85 +1.6
2,247,652 + frwD NIAGMN_11360 0.85 +0.5
2,247,652 + frwD NIAGMN_11360 0.85 -2.4
2,247,652 + frwD NIAGMN_11360 0.85 -0.1
2,247,652 + frwD NIAGMN_11360 0.85 +0.1
2,247,652 + frwD NIAGMN_11360 0.85 -1.0
2,247,652 + frwD NIAGMN_11360 0.85 +0.0
2,247,652 + frwD NIAGMN_11360 0.85 +1.3
2,247,652 + frwD NIAGMN_11360 0.85 -0.0
2,247,652 + frwD NIAGMN_11360 0.85 -0.1
2,247,652 + frwD NIAGMN_11360 0.85 -0.8
2,247,652 + frwD NIAGMN_11360 0.85 -0.0
2,247,652 + frwD NIAGMN_11360 0.85 +0.1
2,247,652 + frwD NIAGMN_11360 0.85 +0.5
2,247,652 + frwD NIAGMN_11360 0.85 -0.4
2,247,652 + frwD NIAGMN_11360 0.85 +0.2
2,247,653 - frwD NIAGMN_11360 0.85 +0.8
2,247,653 - frwD NIAGMN_11360 0.85 -1.5
2,247,653 - frwD NIAGMN_11360 0.85 +0.4
2,247,653 - frwD NIAGMN_11360 0.85 +0.8
2,247,653 - frwD NIAGMN_11360 0.85 -0.6
2,247,653 - frwD NIAGMN_11360 0.85 -1.7
2,247,653 - frwD NIAGMN_11360 0.85 +0.5
2,247,653 - frwD NIAGMN_11360 0.85 +0.4
2,247,653 - frwD NIAGMN_11360 0.85 -0.8
2,247,653 - frwD NIAGMN_11360 0.85 +0.1
2,247,653 - frwD NIAGMN_11360 0.85 +0.5
2,247,653 - frwD NIAGMN_11360 0.85 -0.9
2,247,653 - frwD NIAGMN_11360 0.85 -1.0
2,247,653 - frwD NIAGMN_11360 0.85 -0.5
2,247,653 - frwD NIAGMN_11360 0.85 -1.3
2,247,653 - frwD NIAGMN_11360 0.85 +1.0
2,247,653 - frwD NIAGMN_11360 0.85 +0.6
2,247,653 - frwD NIAGMN_11360 0.85 -0.4
2,247,653 - frwD NIAGMN_11360 0.85 -1.2
2,247,653 - frwD NIAGMN_11360 0.85 -0.1
2,247,653 - frwD NIAGMN_11360 0.85 +0.4
2,247,653 - frwD NIAGMN_11360 0.85 +0.4
2,247,653 - frwD NIAGMN_11360 0.85 -0.3
2,247,653 - frwD NIAGMN_11360 0.85 -0.1
2,247,653 - frwD NIAGMN_11360 0.85 +0.2
2,247,653 - frwD NIAGMN_11360 0.85 -0.2
2,247,656 + frwD NIAGMN_11360 0.86 -0.3
2,247,656 + frwD NIAGMN_11360 0.86 +0.6
2,247,656 + frwD NIAGMN_11360 0.86 +0.5
2,247,656 + frwD NIAGMN_11360 0.86 -0.0
2,247,656 + frwD NIAGMN_11360 0.86 -0.2
2,247,656 + frwD NIAGMN_11360 0.86 -0.6
2,247,656 + frwD NIAGMN_11360 0.86 +0.5
2,247,657 - frwD NIAGMN_11360 0.86 -0.4
2,247,657 - frwD NIAGMN_11360 0.86 -1.5
2,247,657 - frwD NIAGMN_11360 0.86 -0.9
2,247,657 - frwD NIAGMN_11360 0.86 +0.7
2,247,657 - frwD NIAGMN_11360 0.86 -1.6
2,247,657 - frwD NIAGMN_11360 0.86 +2.6
2,247,657 - frwD NIAGMN_11360 0.86 +0.0
2,247,673 - -0.1
2,247,697 + -0.5
2,247,698 - -0.0
2,247,708 - +0.4
2,247,854 - pflC NIAGMN_11365 0.17 -2.5
2,247,890 - pflC NIAGMN_11365 0.21 +0.5
2,247,890 - pflC NIAGMN_11365 0.21 -1.0
2,247,947 - pflC NIAGMN_11365 0.27 +1.1
2,248,468 - pflC NIAGMN_11365 0.87 +0.3
2,248,468 - pflC NIAGMN_11365 0.87 +0.5
2,248,468 - pflC NIAGMN_11365 0.87 +1.7
2,248,496 + pflC NIAGMN_11365 0.90 -0.6
2,248,497 - -1.6
2,248,551 + +0.3
2,248,551 + -0.0
2,248,552 - +1.2
2,248,653 + +0.8
2,248,654 - +0.1
2,248,654 - +0.2
2,248,654 - +1.0

Or see this region's nucleotide sequence