Strain Fitness in Escherichia coli ECRC102 around NIAGMN_10475

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjdN and phnC are separated by 132 nucleotidesphnC and phnD are separated by 24 nucleotidesphnD and NIAGMN_10485 are separated by 105 nucleotidesNIAGMN_10485 and phnF are separated by 20 nucleotides NIAGMN_10465: yjdN - VOC family metalloprotein YjdN, at 2,059,896 to 2,060,339 yjdN NIAGMN_10470: phnC - phosphonate ABC transporter ATP-binding protein, at 2,060,472 to 2,061,260 phnC NIAGMN_10475: phnD - phosphonate ABC transporter substrate-binding protein, at 2,061,285 to 2,062,301 phnD NIAGMN_10485: NIAGMN_10485 - Phosphonate ABC transporter permease protein PhnE, at 2,062,407 to 2,063,186 _10485 NIAGMN_10490: phnF - phosphonate metabolism transcriptional regulator PhnF, at 2,063,207 to 2,063,932 phnF Position (kb) 2061 2062 2063Strain fitness (log2 ratio) -2 -1 0 1 2at 2060.309 kb on + strandat 2060.309 kb on + strandat 2060.309 kb on + strandat 2060.309 kb on + strandat 2060.309 kb on + strandat 2060.310 kb on - strandat 2060.310 kb on - strandat 2060.310 kb on - strandat 2060.310 kb on - strandat 2060.310 kb on - strandat 2060.431 kb on - strandat 2060.483 kb on + strandat 2060.611 kb on + strand, within phnCat 2060.611 kb on + strand, within phnCat 2060.612 kb on - strand, within phnCat 2060.612 kb on - strand, within phnCat 2060.612 kb on - strand, within phnCat 2060.620 kb on + strand, within phnCat 2060.621 kb on - strand, within phnCat 2060.621 kb on - strand, within phnCat 2060.621 kb on - strand, within phnCat 2060.642 kb on + strand, within phnCat 2060.740 kb on - strand, within phnCat 2060.740 kb on - strand, within phnCat 2060.838 kb on - strand, within phnCat 2060.910 kb on + strand, within phnCat 2061.114 kb on + strand, within phnCat 2061.115 kb on - strand, within phnCat 2061.115 kb on - strand, within phnCat 2061.115 kb on - strand, within phnCat 2061.115 kb on - strand, within phnCat 2061.169 kb on - strand, within phnCat 2061.169 kb on - strand, within phnCat 2061.294 kb on - strandat 2061.298 kb on + strandat 2061.298 kb on + strandat 2061.298 kb on + strandat 2061.299 kb on - strandat 2061.299 kb on - strandat 2061.395 kb on + strand, within phnDat 2061.395 kb on + strand, within phnDat 2061.446 kb on - strand, within phnDat 2061.502 kb on - strand, within phnDat 2061.772 kb on - strand, within phnDat 2061.772 kb on - strand, within phnDat 2061.772 kb on - strand, within phnDat 2061.791 kb on + strand, within phnDat 2061.992 kb on + strand, within phnDat 2062.026 kb on + strand, within phnDat 2062.027 kb on - strand, within phnDat 2062.178 kb on + strand, within phnDat 2062.178 kb on + strand, within phnDat 2062.179 kb on - strand, within phnDat 2062.179 kb on - strand, within phnDat 2062.283 kb on - strandat 2062.286 kb on + strandat 2062.286 kb on + strandat 2062.286 kb on + strandat 2062.286 kb on + strandat 2062.286 kb on + strandat 2062.286 kb on + strandat 2062.287 kb on - strandat 2062.599 kb on + strand, within NIAGMN_10485at 2062.599 kb on + strand, within NIAGMN_10485at 2062.600 kb on - strand, within NIAGMN_10485at 2062.600 kb on - strand, within NIAGMN_10485at 2062.600 kb on - strand, within NIAGMN_10485at 2062.600 kb on - strand, within NIAGMN_10485at 2062.600 kb on - strand, within NIAGMN_10485at 2062.717 kb on - strand, within NIAGMN_10485at 2062.948 kb on - strand, within NIAGMN_10485at 2062.986 kb on + strand, within NIAGMN_10485at 2062.986 kb on + strand, within NIAGMN_10485at 2062.987 kb on - strand, within NIAGMN_10485at 2063.171 kb on + strandat 2063.180 kb on + strandat 2063.181 kb on - strandat 2063.202 kb on + strandat 2063.202 kb on + strandat 2063.202 kb on + strandat 2063.202 kb on + strandat 2063.202 kb on + strandat 2063.202 kb on + strandat 2063.202 kb on + strandat 2063.202 kb on + strandat 2063.203 kb on - strandat 2063.203 kb on - strandat 2063.203 kb on - strandat 2063.203 kb on - strandat 2063.203 kb on - strandat 2063.203 kb on - strandat 2063.203 kb on - strandat 2063.206 kb on + strandat 2063.206 kb on + strandat 2063.206 kb on + strandat 2063.206 kb on + strandat 2063.206 kb on + strandat 2063.206 kb on + strandat 2063.206 kb on + strandat 2063.206 kb on + strandat 2063.207 kb on - strandat 2063.207 kb on - strandat 2063.207 kb on - strandat 2063.207 kb on - strandat 2063.207 kb on - strandat 2063.207 kb on - strandat 2063.218 kb on + strandat 2063.246 kb on + strandat 2063.247 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,060,309 + -0.6
2,060,309 + +0.7
2,060,309 + -0.3
2,060,309 + +0.2
2,060,309 + +0.3
2,060,310 - -0.2
2,060,310 - -2.1
2,060,310 - -1.2
2,060,310 - +0.6
2,060,310 - -1.9
2,060,431 - +0.5
2,060,483 + -0.2
2,060,611 + phnC NIAGMN_10470 0.18 -0.7
2,060,611 + phnC NIAGMN_10470 0.18 +0.7
2,060,612 - phnC NIAGMN_10470 0.18 +1.4
2,060,612 - phnC NIAGMN_10470 0.18 +0.1
2,060,612 - phnC NIAGMN_10470 0.18 -1.3
2,060,620 + phnC NIAGMN_10470 0.19 +2.2
2,060,621 - phnC NIAGMN_10470 0.19 -0.0
2,060,621 - phnC NIAGMN_10470 0.19 -0.9
2,060,621 - phnC NIAGMN_10470 0.19 +0.2
2,060,642 + phnC NIAGMN_10470 0.22 -0.5
2,060,740 - phnC NIAGMN_10470 0.34 +0.8
2,060,740 - phnC NIAGMN_10470 0.34 -1.2
2,060,838 - phnC NIAGMN_10470 0.46 -0.4
2,060,910 + phnC NIAGMN_10470 0.56 -0.8
2,061,114 + phnC NIAGMN_10470 0.81 +0.4
2,061,115 - phnC NIAGMN_10470 0.81 +0.9
2,061,115 - phnC NIAGMN_10470 0.81 -0.4
2,061,115 - phnC NIAGMN_10470 0.81 -0.5
2,061,115 - phnC NIAGMN_10470 0.81 +0.0
2,061,169 - phnC NIAGMN_10470 0.88 +0.9
2,061,169 - phnC NIAGMN_10470 0.88 -1.9
2,061,294 - +0.6
2,061,298 + +0.1
2,061,298 + +0.5
2,061,298 + +0.6
2,061,299 - +0.3
2,061,299 - -0.4
2,061,395 + phnD NIAGMN_10475 0.11 +0.5
2,061,395 + phnD NIAGMN_10475 0.11 +0.6
2,061,446 - phnD NIAGMN_10475 0.16 -1.3
2,061,502 - phnD NIAGMN_10475 0.21 +0.8
2,061,772 - phnD NIAGMN_10475 0.48 -0.7
2,061,772 - phnD NIAGMN_10475 0.48 +0.9
2,061,772 - phnD NIAGMN_10475 0.48 +1.7
2,061,791 + phnD NIAGMN_10475 0.50 +1.1
2,061,992 + phnD NIAGMN_10475 0.70 +0.4
2,062,026 + phnD NIAGMN_10475 0.73 -0.2
2,062,027 - phnD NIAGMN_10475 0.73 +0.2
2,062,178 + phnD NIAGMN_10475 0.88 -0.5
2,062,178 + phnD NIAGMN_10475 0.88 -0.9
2,062,179 - phnD NIAGMN_10475 0.88 -0.8
2,062,179 - phnD NIAGMN_10475 0.88 -0.1
2,062,283 - -0.5
2,062,286 + +1.0
2,062,286 + +0.2
2,062,286 + -0.4
2,062,286 + -0.3
2,062,286 + +0.7
2,062,286 + -0.2
2,062,287 - -0.9
2,062,599 + NIAGMN_10485 0.25 -0.7
2,062,599 + NIAGMN_10485 0.25 +0.1
2,062,600 - NIAGMN_10485 0.25 -1.3
2,062,600 - NIAGMN_10485 0.25 +0.9
2,062,600 - NIAGMN_10485 0.25 -1.2
2,062,600 - NIAGMN_10485 0.25 -0.2
2,062,600 - NIAGMN_10485 0.25 -2.0
2,062,717 - NIAGMN_10485 0.40 +0.4
2,062,948 - NIAGMN_10485 0.69 +0.5
2,062,986 + NIAGMN_10485 0.74 +0.4
2,062,986 + NIAGMN_10485 0.74 -1.6
2,062,987 - NIAGMN_10485 0.74 +0.5
2,063,171 + +0.3
2,063,180 + +1.8
2,063,181 - +0.5
2,063,202 + -0.6
2,063,202 + +0.5
2,063,202 + -0.3
2,063,202 + -0.1
2,063,202 + -0.6
2,063,202 + -0.9
2,063,202 + +0.4
2,063,202 + -0.7
2,063,203 - +0.5
2,063,203 - -0.2
2,063,203 - +1.5
2,063,203 - -1.3
2,063,203 - +0.2
2,063,203 - -1.2
2,063,203 - +0.3
2,063,206 + -2.4
2,063,206 + +1.6
2,063,206 + -0.4
2,063,206 + -0.6
2,063,206 + +0.7
2,063,206 + -1.2
2,063,206 + +0.0
2,063,206 + -2.7
2,063,207 - -0.8
2,063,207 - +0.7
2,063,207 - -0.2
2,063,207 - -0.9
2,063,207 - -0.2
2,063,207 - -0.3
2,063,218 + -0.2
2,063,246 + -0.0
2,063,247 - -1.1

Or see this region's nucleotide sequence