Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjdN and phnC are separated by 132 nucleotides phnC and phnD are separated by 24 nucleotides phnD and NIAGMN_10485 are separated by 105 nucleotides NIAGMN_10485 and phnF are separated by 20 nucleotides
NIAGMN_10465: yjdN - VOC family metalloprotein YjdN, at 2,059,896 to 2,060,339
yjdN
NIAGMN_10470: phnC - phosphonate ABC transporter ATP-binding protein, at 2,060,472 to 2,061,260
phnC
NIAGMN_10475: phnD - phosphonate ABC transporter substrate-binding protein, at 2,061,285 to 2,062,301
phnD
NIAGMN_10485: NIAGMN_10485 - Phosphonate ABC transporter permease protein PhnE, at 2,062,407 to 2,063,186
_10485
NIAGMN_10490: phnF - phosphonate metabolism transcriptional regulator PhnF, at 2,063,207 to 2,063,932
phnF
Position (kb)
2061
2062
2063 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2060.309 kb on + strand at 2060.309 kb on + strand at 2060.309 kb on + strand at 2060.309 kb on + strand at 2060.309 kb on + strand at 2060.310 kb on - strand at 2060.310 kb on - strand at 2060.310 kb on - strand at 2060.310 kb on - strand at 2060.310 kb on - strand at 2060.431 kb on - strand at 2060.483 kb on + strand at 2060.611 kb on + strand, within phnC at 2060.611 kb on + strand, within phnC at 2060.612 kb on - strand, within phnC at 2060.612 kb on - strand, within phnC at 2060.612 kb on - strand, within phnC at 2060.620 kb on + strand, within phnC at 2060.621 kb on - strand, within phnC at 2060.621 kb on - strand, within phnC at 2060.621 kb on - strand, within phnC at 2060.642 kb on + strand, within phnC at 2060.740 kb on - strand, within phnC at 2060.740 kb on - strand, within phnC at 2060.838 kb on - strand, within phnC at 2060.910 kb on + strand, within phnC at 2061.114 kb on + strand, within phnC at 2061.115 kb on - strand, within phnC at 2061.115 kb on - strand, within phnC at 2061.115 kb on - strand, within phnC at 2061.115 kb on - strand, within phnC at 2061.169 kb on - strand, within phnC at 2061.169 kb on - strand, within phnC at 2061.294 kb on - strand at 2061.298 kb on + strand at 2061.298 kb on + strand at 2061.298 kb on + strand at 2061.299 kb on - strand at 2061.299 kb on - strand at 2061.395 kb on + strand, within phnD at 2061.395 kb on + strand, within phnD at 2061.446 kb on - strand, within phnD at 2061.502 kb on - strand, within phnD at 2061.772 kb on - strand, within phnD at 2061.772 kb on - strand, within phnD at 2061.772 kb on - strand, within phnD at 2061.791 kb on + strand, within phnD at 2061.992 kb on + strand, within phnD at 2062.026 kb on + strand, within phnD at 2062.027 kb on - strand, within phnD at 2062.178 kb on + strand, within phnD at 2062.178 kb on + strand, within phnD at 2062.179 kb on - strand, within phnD at 2062.179 kb on - strand, within phnD at 2062.283 kb on - strand at 2062.286 kb on + strand at 2062.286 kb on + strand at 2062.286 kb on + strand at 2062.286 kb on + strand at 2062.286 kb on + strand at 2062.286 kb on + strand at 2062.287 kb on - strand at 2062.599 kb on + strand, within NIAGMN_10485 at 2062.599 kb on + strand, within NIAGMN_10485 at 2062.600 kb on - strand, within NIAGMN_10485 at 2062.600 kb on - strand, within NIAGMN_10485 at 2062.600 kb on - strand, within NIAGMN_10485 at 2062.600 kb on - strand, within NIAGMN_10485 at 2062.600 kb on - strand, within NIAGMN_10485 at 2062.717 kb on - strand, within NIAGMN_10485 at 2062.948 kb on - strand, within NIAGMN_10485 at 2062.986 kb on + strand, within NIAGMN_10485 at 2062.986 kb on + strand, within NIAGMN_10485 at 2062.987 kb on - strand, within NIAGMN_10485 at 2063.171 kb on + strand at 2063.180 kb on + strand at 2063.181 kb on - strand at 2063.202 kb on + strand at 2063.202 kb on + strand at 2063.202 kb on + strand at 2063.202 kb on + strand at 2063.202 kb on + strand at 2063.202 kb on + strand at 2063.202 kb on + strand at 2063.202 kb on + strand at 2063.203 kb on - strand at 2063.203 kb on - strand at 2063.203 kb on - strand at 2063.203 kb on - strand at 2063.203 kb on - strand at 2063.203 kb on - strand at 2063.203 kb on - strand at 2063.206 kb on + strand at 2063.206 kb on + strand at 2063.206 kb on + strand at 2063.206 kb on + strand at 2063.206 kb on + strand at 2063.206 kb on + strand at 2063.206 kb on + strand at 2063.206 kb on + strand at 2063.207 kb on - strand at 2063.207 kb on - strand at 2063.207 kb on - strand at 2063.207 kb on - strand at 2063.207 kb on - strand at 2063.207 kb on - strand at 2063.218 kb on + strand at 2063.246 kb on + strand at 2063.247 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,060,309 + -0.6 2,060,309 + +0.7 2,060,309 + -0.3 2,060,309 + +0.2 2,060,309 + +0.3 2,060,310 - -0.2 2,060,310 - -2.1 2,060,310 - -1.2 2,060,310 - +0.6 2,060,310 - -1.9 2,060,431 - +0.5 2,060,483 + -0.2 2,060,611 + phnC NIAGMN_10470 0.18 -0.7 2,060,611 + phnC NIAGMN_10470 0.18 +0.7 2,060,612 - phnC NIAGMN_10470 0.18 +1.4 2,060,612 - phnC NIAGMN_10470 0.18 +0.1 2,060,612 - phnC NIAGMN_10470 0.18 -1.3 2,060,620 + phnC NIAGMN_10470 0.19 +2.2 2,060,621 - phnC NIAGMN_10470 0.19 -0.0 2,060,621 - phnC NIAGMN_10470 0.19 -0.9 2,060,621 - phnC NIAGMN_10470 0.19 +0.2 2,060,642 + phnC NIAGMN_10470 0.22 -0.5 2,060,740 - phnC NIAGMN_10470 0.34 +0.8 2,060,740 - phnC NIAGMN_10470 0.34 -1.2 2,060,838 - phnC NIAGMN_10470 0.46 -0.4 2,060,910 + phnC NIAGMN_10470 0.56 -0.8 2,061,114 + phnC NIAGMN_10470 0.81 +0.4 2,061,115 - phnC NIAGMN_10470 0.81 +0.9 2,061,115 - phnC NIAGMN_10470 0.81 -0.4 2,061,115 - phnC NIAGMN_10470 0.81 -0.5 2,061,115 - phnC NIAGMN_10470 0.81 +0.0 2,061,169 - phnC NIAGMN_10470 0.88 +0.9 2,061,169 - phnC NIAGMN_10470 0.88 -1.9 2,061,294 - +0.6 2,061,298 + +0.1 2,061,298 + +0.5 2,061,298 + +0.6 2,061,299 - +0.3 2,061,299 - -0.4 2,061,395 + phnD NIAGMN_10475 0.11 +0.5 2,061,395 + phnD NIAGMN_10475 0.11 +0.6 2,061,446 - phnD NIAGMN_10475 0.16 -1.3 2,061,502 - phnD NIAGMN_10475 0.21 +0.8 2,061,772 - phnD NIAGMN_10475 0.48 -0.7 2,061,772 - phnD NIAGMN_10475 0.48 +0.9 2,061,772 - phnD NIAGMN_10475 0.48 +1.7 2,061,791 + phnD NIAGMN_10475 0.50 +1.1 2,061,992 + phnD NIAGMN_10475 0.70 +0.4 2,062,026 + phnD NIAGMN_10475 0.73 -0.2 2,062,027 - phnD NIAGMN_10475 0.73 +0.2 2,062,178 + phnD NIAGMN_10475 0.88 -0.5 2,062,178 + phnD NIAGMN_10475 0.88 -0.9 2,062,179 - phnD NIAGMN_10475 0.88 -0.8 2,062,179 - phnD NIAGMN_10475 0.88 -0.1 2,062,283 - -0.5 2,062,286 + +1.0 2,062,286 + +0.2 2,062,286 + -0.4 2,062,286 + -0.3 2,062,286 + +0.7 2,062,286 + -0.2 2,062,287 - -0.9 2,062,599 + NIAGMN_10485 0.25 -0.7 2,062,599 + NIAGMN_10485 0.25 +0.1 2,062,600 - NIAGMN_10485 0.25 -1.3 2,062,600 - NIAGMN_10485 0.25 +0.9 2,062,600 - NIAGMN_10485 0.25 -1.2 2,062,600 - NIAGMN_10485 0.25 -0.2 2,062,600 - NIAGMN_10485 0.25 -2.0 2,062,717 - NIAGMN_10485 0.40 +0.4 2,062,948 - NIAGMN_10485 0.69 +0.5 2,062,986 + NIAGMN_10485 0.74 +0.4 2,062,986 + NIAGMN_10485 0.74 -1.6 2,062,987 - NIAGMN_10485 0.74 +0.5 2,063,171 + +0.3 2,063,180 + +1.8 2,063,181 - +0.5 2,063,202 + -0.6 2,063,202 + +0.5 2,063,202 + -0.3 2,063,202 + -0.1 2,063,202 + -0.6 2,063,202 + -0.9 2,063,202 + +0.4 2,063,202 + -0.7 2,063,203 - +0.5 2,063,203 - -0.2 2,063,203 - +1.5 2,063,203 - -1.3 2,063,203 - +0.2 2,063,203 - -1.2 2,063,203 - +0.3 2,063,206 + -2.4 2,063,206 + +1.6 2,063,206 + -0.4 2,063,206 + -0.6 2,063,206 + +0.7 2,063,206 + -1.2 2,063,206 + +0.0 2,063,206 + -2.7 2,063,207 - -0.8 2,063,207 - +0.7 2,063,207 - -0.2 2,063,207 - -0.9 2,063,207 - -0.2 2,063,207 - -0.3 2,063,218 + -0.2 2,063,246 + -0.0 2,063,247 - -1.1
Or see this region's nucleotide sequence