Strain Fitness in Escherichia coli ECRC102 around NIAGMN_09970

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpriB and rpsF are separated by 6 nucleotidesrpsF and yjfY are separated by 326 nucleotidesyjfY and ulaF are separated by 128 nucleotidesulaF and ulaE overlap by 1 nucleotides NIAGMN_09960: priB - primosomal replication protein N, at 1,960,924 to 1,961,238 priB NIAGMN_09965: rpsF - 30S ribosomal protein S6, at 1,961,245 to 1,961,640 rpsF NIAGMN_09970: yjfY - Uncharacterized protein YjfY, at 1,961,967 to 1,962,242 yjfY NIAGMN_09975: ulaF - L-ribulose-5-phosphate 4-epimerase UlaF, at 1,962,371 to 1,963,057 ulaF NIAGMN_09980: ulaE - L-ribulose-5-phosphate 3-epimerase UlaE, at 1,963,057 to 1,963,911 ulaE Position (kb) 1961 1962 1963Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1961.782 kb on + strandat 1961.782 kb on + strandat 1961.783 kb on - strandat 1961.783 kb on - strandat 1961.810 kb on - strandat 1961.810 kb on - strandat 1961.810 kb on - strandat 1961.894 kb on - strandat 1961.962 kb on + strandat 1961.962 kb on + strandat 1961.962 kb on + strandat 1961.962 kb on + strandat 1961.962 kb on + strandat 1961.963 kb on - strandat 1961.963 kb on - strandat 1961.963 kb on - strandat 1961.963 kb on - strandat 1961.963 kb on - strandat 1961.966 kb on + strandat 1961.966 kb on + strandat 1961.966 kb on + strandat 1961.966 kb on + strandat 1961.966 kb on + strandat 1961.966 kb on + strandat 1961.967 kb on - strandat 1961.967 kb on - strandat 1961.967 kb on - strandat 1961.967 kb on - strandat 1961.967 kb on - strandat 1961.967 kb on - strandat 1961.967 kb on - strandat 1962.017 kb on + strand, within yjfYat 1962.017 kb on + strand, within yjfYat 1962.017 kb on + strand, within yjfYat 1962.017 kb on + strand, within yjfYat 1962.038 kb on + strand, within yjfYat 1962.038 kb on + strand, within yjfYat 1962.039 kb on - strand, within yjfYat 1962.039 kb on - strand, within yjfYat 1962.090 kb on + strand, within yjfYat 1962.090 kb on + strand, within yjfYat 1962.091 kb on - strand, within yjfYat 1962.091 kb on - strand, within yjfYat 1962.101 kb on + strand, within yjfYat 1962.101 kb on + strand, within yjfYat 1962.136 kb on + strand, within yjfYat 1962.136 kb on + strand, within yjfYat 1962.136 kb on + strand, within yjfYat 1962.136 kb on + strand, within yjfYat 1962.168 kb on + strand, within yjfYat 1962.168 kb on + strand, within yjfYat 1962.168 kb on + strand, within yjfYat 1962.169 kb on - strand, within yjfYat 1962.169 kb on - strand, within yjfYat 1962.169 kb on - strand, within yjfYat 1962.169 kb on - strand, within yjfYat 1962.171 kb on + strand, within yjfYat 1962.171 kb on + strand, within yjfYat 1962.172 kb on - strand, within yjfYat 1962.172 kb on - strand, within yjfYat 1962.172 kb on - strand, within yjfYat 1962.178 kb on + strand, within yjfYat 1962.178 kb on + strand, within yjfYat 1962.212 kb on + strand, within yjfYat 1962.212 kb on + strand, within yjfYat 1962.212 kb on + strand, within yjfYat 1962.213 kb on - strand, within yjfYat 1962.213 kb on - strand, within yjfYat 1962.213 kb on - strand, within yjfYat 1962.213 kb on - strand, within yjfYat 1962.213 kb on - strand, within yjfYat 1962.234 kb on + strandat 1962.234 kb on + strandat 1962.235 kb on - strandat 1962.235 kb on - strandat 1962.235 kb on - strandat 1962.250 kb on + strandat 1962.250 kb on + strandat 1962.250 kb on + strandat 1962.251 kb on - strandat 1962.251 kb on - strandat 1962.251 kb on - strandat 1962.272 kb on + strandat 1962.272 kb on + strandat 1962.273 kb on - strandat 1962.273 kb on - strandat 1962.327 kb on - strandat 1962.335 kb on + strandat 1962.336 kb on - strandat 1962.336 kb on - strandat 1962.373 kb on - strandat 1962.373 kb on - strandat 1962.384 kb on + strandat 1962.387 kb on + strandat 1962.388 kb on - strandat 1962.406 kb on + strandat 1962.406 kb on + strandat 1962.406 kb on + strandat 1962.406 kb on + strandat 1962.407 kb on - strandat 1962.460 kb on + strand, within ulaFat 1962.460 kb on + strand, within ulaFat 1962.460 kb on + strand, within ulaFat 1962.461 kb on - strand, within ulaFat 1962.463 kb on + strand, within ulaFat 1962.463 kb on + strand, within ulaFat 1962.463 kb on + strand, within ulaFat 1962.506 kb on + strand, within ulaFat 1962.506 kb on + strand, within ulaFat 1962.564 kb on + strand, within ulaFat 1962.564 kb on + strand, within ulaFat 1962.564 kb on + strand, within ulaFat 1962.564 kb on + strand, within ulaFat 1962.565 kb on - strand, within ulaFat 1962.584 kb on - strand, within ulaFat 1962.584 kb on - strand, within ulaFat 1962.642 kb on + strand, within ulaFat 1962.680 kb on - strand, within ulaFat 1962.702 kb on + strand, within ulaFat 1962.703 kb on - strand, within ulaFat 1962.703 kb on - strand, within ulaFat 1962.814 kb on - strand, within ulaFat 1962.853 kb on - strand, within ulaFat 1962.872 kb on - strand, within ulaFat 1962.895 kb on + strand, within ulaFat 1962.988 kb on + strand, within ulaFat 1963.058 kb on + strandat 1963.058 kb on + strandat 1963.170 kb on - strand, within ulaE

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,961,782 + +1.0
1,961,782 + -0.4
1,961,783 - -1.2
1,961,783 - +1.1
1,961,810 - -0.3
1,961,810 - -0.2
1,961,810 - -0.2
1,961,894 - +0.0
1,961,962 + -0.7
1,961,962 + -0.8
1,961,962 + +1.8
1,961,962 + -2.2
1,961,962 + -0.2
1,961,963 - +2.6
1,961,963 - -0.1
1,961,963 - +1.6
1,961,963 - -0.1
1,961,963 - -0.5
1,961,966 + -1.0
1,961,966 + -0.7
1,961,966 + +0.7
1,961,966 + +0.3
1,961,966 + -0.7
1,961,966 + -0.9
1,961,967 - -0.4
1,961,967 - -0.3
1,961,967 - -0.1
1,961,967 - +0.6
1,961,967 - -0.4
1,961,967 - +0.6
1,961,967 - -1.0
1,962,017 + yjfY NIAGMN_09970 0.18 +0.1
1,962,017 + yjfY NIAGMN_09970 0.18 -0.2
1,962,017 + yjfY NIAGMN_09970 0.18 -0.2
1,962,017 + yjfY NIAGMN_09970 0.18 +0.3
1,962,038 + yjfY NIAGMN_09970 0.26 +0.0
1,962,038 + yjfY NIAGMN_09970 0.26 -0.2
1,962,039 - yjfY NIAGMN_09970 0.26 -0.6
1,962,039 - yjfY NIAGMN_09970 0.26 -2.7
1,962,090 + yjfY NIAGMN_09970 0.45 -0.5
1,962,090 + yjfY NIAGMN_09970 0.45 -0.2
1,962,091 - yjfY NIAGMN_09970 0.45 -0.0
1,962,091 - yjfY NIAGMN_09970 0.45 +0.3
1,962,101 + yjfY NIAGMN_09970 0.49 +0.7
1,962,101 + yjfY NIAGMN_09970 0.49 +0.9
1,962,136 + yjfY NIAGMN_09970 0.61 -0.9
1,962,136 + yjfY NIAGMN_09970 0.61 -0.2
1,962,136 + yjfY NIAGMN_09970 0.61 +0.4
1,962,136 + yjfY NIAGMN_09970 0.61 +0.0
1,962,168 + yjfY NIAGMN_09970 0.73 +0.4
1,962,168 + yjfY NIAGMN_09970 0.73 +1.4
1,962,168 + yjfY NIAGMN_09970 0.73 -0.7
1,962,169 - yjfY NIAGMN_09970 0.73 -1.2
1,962,169 - yjfY NIAGMN_09970 0.73 +0.2
1,962,169 - yjfY NIAGMN_09970 0.73 -2.0
1,962,169 - yjfY NIAGMN_09970 0.73 +0.7
1,962,171 + yjfY NIAGMN_09970 0.74 -2.0
1,962,171 + yjfY NIAGMN_09970 0.74 -3.6
1,962,172 - yjfY NIAGMN_09970 0.74 -0.0
1,962,172 - yjfY NIAGMN_09970 0.74 +0.2
1,962,172 - yjfY NIAGMN_09970 0.74 +0.5
1,962,178 + yjfY NIAGMN_09970 0.76 +0.2
1,962,178 + yjfY NIAGMN_09970 0.76 -0.4
1,962,212 + yjfY NIAGMN_09970 0.89 -0.4
1,962,212 + yjfY NIAGMN_09970 0.89 +0.2
1,962,212 + yjfY NIAGMN_09970 0.89 +0.3
1,962,213 - yjfY NIAGMN_09970 0.89 +0.2
1,962,213 - yjfY NIAGMN_09970 0.89 -0.5
1,962,213 - yjfY NIAGMN_09970 0.89 -0.0
1,962,213 - yjfY NIAGMN_09970 0.89 +0.5
1,962,213 - yjfY NIAGMN_09970 0.89 -2.8
1,962,234 + -0.5
1,962,234 + -0.7
1,962,235 - +0.0
1,962,235 - -1.0
1,962,235 - -1.0
1,962,250 + +0.8
1,962,250 + +0.9
1,962,250 + -0.2
1,962,251 - +0.8
1,962,251 - -2.2
1,962,251 - -0.0
1,962,272 + -0.2
1,962,272 + +0.1
1,962,273 - +0.9
1,962,273 - +0.2
1,962,327 - -0.2
1,962,335 + +0.2
1,962,336 - -0.7
1,962,336 - -1.7
1,962,373 - +0.2
1,962,373 - -0.3
1,962,384 + +0.2
1,962,387 + -0.0
1,962,388 - -0.9
1,962,406 + -1.2
1,962,406 + -0.0
1,962,406 + -0.3
1,962,406 + -0.9
1,962,407 - -0.0
1,962,460 + ulaF NIAGMN_09975 0.13 +0.4
1,962,460 + ulaF NIAGMN_09975 0.13 +1.0
1,962,460 + ulaF NIAGMN_09975 0.13 -0.2
1,962,461 - ulaF NIAGMN_09975 0.13 +0.5
1,962,463 + ulaF NIAGMN_09975 0.13 -0.2
1,962,463 + ulaF NIAGMN_09975 0.13 -0.2
1,962,463 + ulaF NIAGMN_09975 0.13 -0.2
1,962,506 + ulaF NIAGMN_09975 0.20 -1.1
1,962,506 + ulaF NIAGMN_09975 0.20 -0.2
1,962,564 + ulaF NIAGMN_09975 0.28 -3.0
1,962,564 + ulaF NIAGMN_09975 0.28 -0.8
1,962,564 + ulaF NIAGMN_09975 0.28 +0.9
1,962,564 + ulaF NIAGMN_09975 0.28 -0.1
1,962,565 - ulaF NIAGMN_09975 0.28 +0.1
1,962,584 - ulaF NIAGMN_09975 0.31 +1.9
1,962,584 - ulaF NIAGMN_09975 0.31 -0.1
1,962,642 + ulaF NIAGMN_09975 0.39 -0.1
1,962,680 - ulaF NIAGMN_09975 0.45 -0.3
1,962,702 + ulaF NIAGMN_09975 0.48 -0.2
1,962,703 - ulaF NIAGMN_09975 0.48 +0.9
1,962,703 - ulaF NIAGMN_09975 0.48 +0.2
1,962,814 - ulaF NIAGMN_09975 0.64 +0.4
1,962,853 - ulaF NIAGMN_09975 0.70 -0.4
1,962,872 - ulaF NIAGMN_09975 0.73 -2.3
1,962,895 + ulaF NIAGMN_09975 0.76 +0.3
1,962,988 + ulaF NIAGMN_09975 0.90 -1.7
1,963,058 + +1.1
1,963,058 + -0.7
1,963,170 - ulaE NIAGMN_09980 0.13 -3.6

Or see this region's nucleotide sequence