Strain Fitness in Escherichia coli ECRC102 around NIAGMN_09935

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfklB and ytfB are separated by 217 nucleotidesytfB and insQ are separated by 134 nucleotidesinsQ and tnpA are separated by 67 nucleotides NIAGMN_09925: fklB - FKBP-type peptidyl-prolyl cis-trans isomerase, at 1,955,455 to 1,956,075 fklB NIAGMN_09930: ytfB - cell division protein YtfB, at 1,956,293 to 1,956,931 ytfB NIAGMN_09935: insQ - Putative RNA-guided DNA endonuclease InsQ, at 1,957,066 to 1,958,214 insQ NIAGMN_09940: tnpA - IS200/IS605-like element IS609 family transposase, at 1,958,282 to 1,958,713 tnpA Position (kb) 1957 1958 1959Strain fitness (log2 ratio) -2 -1 0 1 2at 1956.078 kb on + strandat 1956.078 kb on + strandat 1956.078 kb on + strandat 1956.078 kb on + strandat 1956.079 kb on - strandat 1956.090 kb on + strandat 1956.095 kb on + strandat 1956.096 kb on - strandat 1956.097 kb on + strandat 1956.098 kb on - strandat 1956.098 kb on - strandat 1956.098 kb on - strandat 1956.098 kb on - strandat 1956.102 kb on + strandat 1956.114 kb on + strandat 1956.115 kb on - strandat 1956.115 kb on - strandat 1956.136 kb on - strandat 1956.184 kb on + strandat 1956.185 kb on - strandat 1956.185 kb on - strandat 1956.198 kb on - strandat 1956.203 kb on + strandat 1956.203 kb on + strandat 1956.203 kb on + strandat 1956.204 kb on - strandat 1956.206 kb on - strandat 1956.206 kb on - strandat 1956.208 kb on + strandat 1956.208 kb on + strandat 1956.208 kb on + strandat 1956.208 kb on + strandat 1956.209 kb on - strandat 1956.220 kb on + strandat 1956.234 kb on + strandat 1956.235 kb on - strandat 1956.240 kb on + strandat 1956.245 kb on + strandat 1956.246 kb on - strandat 1956.251 kb on + strandat 1956.251 kb on + strandat 1956.251 kb on + strandat 1956.257 kb on - strandat 1956.400 kb on + strand, within ytfBat 1956.400 kb on + strand, within ytfBat 1956.414 kb on + strand, within ytfBat 1956.415 kb on - strand, within ytfBat 1956.415 kb on - strand, within ytfBat 1956.449 kb on - strand, within ytfBat 1956.487 kb on - strand, within ytfBat 1956.490 kb on + strand, within ytfBat 1956.491 kb on - strand, within ytfBat 1956.491 kb on - strand, within ytfBat 1956.540 kb on + strand, within ytfBat 1956.540 kb on + strand, within ytfBat 1956.540 kb on + strand, within ytfBat 1956.540 kb on + strand, within ytfBat 1956.541 kb on - strand, within ytfBat 1956.541 kb on - strand, within ytfBat 1956.541 kb on - strand, within ytfBat 1956.592 kb on + strand, within ytfBat 1956.592 kb on + strand, within ytfBat 1956.592 kb on + strand, within ytfBat 1956.592 kb on + strand, within ytfBat 1956.593 kb on - strand, within ytfBat 1956.593 kb on - strand, within ytfBat 1956.593 kb on - strand, within ytfBat 1956.593 kb on - strand, within ytfBat 1956.593 kb on - strand, within ytfBat 1956.593 kb on - strand, within ytfBat 1956.593 kb on - strand, within ytfBat 1956.593 kb on - strand, within ytfBat 1956.593 kb on - strand, within ytfBat 1956.656 kb on - strand, within ytfBat 1956.683 kb on + strand, within ytfBat 1956.683 kb on + strand, within ytfBat 1956.684 kb on - strand, within ytfBat 1956.752 kb on + strand, within ytfBat 1956.752 kb on + strand, within ytfBat 1956.753 kb on - strand, within ytfBat 1956.753 kb on - strand, within ytfBat 1956.753 kb on - strand, within ytfBat 1956.768 kb on + strand, within ytfBat 1956.769 kb on - strand, within ytfBat 1956.793 kb on + strand, within ytfBat 1956.794 kb on - strand, within ytfBat 1956.916 kb on + strandat 1956.916 kb on + strandat 1956.980 kb on + strandat 1956.980 kb on + strandat 1956.980 kb on + strandat 1956.980 kb on + strandat 1956.980 kb on + strandat 1956.980 kb on + strandat 1956.981 kb on - strandat 1956.981 kb on - strandat 1956.981 kb on - strandat 1956.981 kb on - strandat 1956.981 kb on - strandat 1957.013 kb on + strandat 1957.013 kb on + strandat 1957.014 kb on - strandat 1957.014 kb on - strandat 1957.062 kb on - strandat 1957.170 kb on + strandat 1957.200 kb on + strand, within insQat 1957.200 kb on + strand, within insQat 1957.200 kb on + strand, within insQat 1957.200 kb on + strand, within insQat 1957.200 kb on + strand, within insQat 1957.201 kb on - strand, within insQat 1957.201 kb on - strand, within insQat 1957.203 kb on - strand, within insQat 1957.228 kb on - strand, within insQat 1957.258 kb on - strand, within insQat 1957.258 kb on - strand, within insQat 1957.529 kb on + strand, within insQat 1957.529 kb on + strand, within insQat 1957.529 kb on + strand, within insQat 1957.542 kb on + strand, within insQat 1957.621 kb on + strand, within insQat 1957.622 kb on - strand, within insQat 1957.789 kb on - strand, within insQat 1957.796 kb on + strand, within insQat 1957.796 kb on + strand, within insQat 1957.796 kb on + strand, within insQat 1957.796 kb on + strand, within insQat 1957.797 kb on - strand, within insQat 1957.797 kb on - strand, within insQat 1957.797 kb on - strand, within insQat 1958.286 kb on + strandat 1958.423 kb on + strand, within tnpAat 1958.711 kb on + strandat 1958.969 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,956,078 + -0.6
1,956,078 + -0.0
1,956,078 + +1.9
1,956,078 + -0.1
1,956,079 - -0.6
1,956,090 + -0.5
1,956,095 + -0.5
1,956,096 - -1.0
1,956,097 + -0.2
1,956,098 - -0.1
1,956,098 - -1.8
1,956,098 - -0.2
1,956,098 - +0.4
1,956,102 + -0.2
1,956,114 + +1.9
1,956,115 - +0.5
1,956,115 - +0.5
1,956,136 - +0.0
1,956,184 + +0.4
1,956,185 - -0.8
1,956,185 - +0.2
1,956,198 - -1.0
1,956,203 + +0.6
1,956,203 + +0.7
1,956,203 + -0.1
1,956,204 - +0.3
1,956,206 - -0.5
1,956,206 - -0.2
1,956,208 + -0.1
1,956,208 + -0.2
1,956,208 + +1.0
1,956,208 + -1.7
1,956,209 - -0.3
1,956,220 + -0.2
1,956,234 + -0.7
1,956,235 - +1.2
1,956,240 + +0.5
1,956,245 + +1.4
1,956,246 - -0.5
1,956,251 + -0.1
1,956,251 + -0.6
1,956,251 + +0.1
1,956,257 - -1.9
1,956,400 + ytfB NIAGMN_09930 0.17 -0.2
1,956,400 + ytfB NIAGMN_09930 0.17 +0.8
1,956,414 + ytfB NIAGMN_09930 0.19 +1.3
1,956,415 - ytfB NIAGMN_09930 0.19 -1.7
1,956,415 - ytfB NIAGMN_09930 0.19 +0.6
1,956,449 - ytfB NIAGMN_09930 0.24 -0.9
1,956,487 - ytfB NIAGMN_09930 0.30 +1.2
1,956,490 + ytfB NIAGMN_09930 0.31 -0.1
1,956,491 - ytfB NIAGMN_09930 0.31 -1.2
1,956,491 - ytfB NIAGMN_09930 0.31 -0.6
1,956,540 + ytfB NIAGMN_09930 0.39 +0.3
1,956,540 + ytfB NIAGMN_09930 0.39 -1.3
1,956,540 + ytfB NIAGMN_09930 0.39 +1.3
1,956,540 + ytfB NIAGMN_09930 0.39 +0.4
1,956,541 - ytfB NIAGMN_09930 0.39 -0.7
1,956,541 - ytfB NIAGMN_09930 0.39 -0.9
1,956,541 - ytfB NIAGMN_09930 0.39 -0.2
1,956,592 + ytfB NIAGMN_09930 0.47 -1.6
1,956,592 + ytfB NIAGMN_09930 0.47 -1.0
1,956,592 + ytfB NIAGMN_09930 0.47 -1.6
1,956,592 + ytfB NIAGMN_09930 0.47 +0.3
1,956,593 - ytfB NIAGMN_09930 0.47 +0.1
1,956,593 - ytfB NIAGMN_09930 0.47 +0.4
1,956,593 - ytfB NIAGMN_09930 0.47 +0.5
1,956,593 - ytfB NIAGMN_09930 0.47 +2.2
1,956,593 - ytfB NIAGMN_09930 0.47 +0.1
1,956,593 - ytfB NIAGMN_09930 0.47 +0.1
1,956,593 - ytfB NIAGMN_09930 0.47 +0.7
1,956,593 - ytfB NIAGMN_09930 0.47 +0.3
1,956,593 - ytfB NIAGMN_09930 0.47 -1.5
1,956,656 - ytfB NIAGMN_09930 0.57 -2.0
1,956,683 + ytfB NIAGMN_09930 0.61 +0.1
1,956,683 + ytfB NIAGMN_09930 0.61 -1.0
1,956,684 - ytfB NIAGMN_09930 0.61 +1.4
1,956,752 + ytfB NIAGMN_09930 0.72 +0.4
1,956,752 + ytfB NIAGMN_09930 0.72 +0.0
1,956,753 - ytfB NIAGMN_09930 0.72 -0.1
1,956,753 - ytfB NIAGMN_09930 0.72 -0.6
1,956,753 - ytfB NIAGMN_09930 0.72 +0.2
1,956,768 + ytfB NIAGMN_09930 0.74 +0.1
1,956,769 - ytfB NIAGMN_09930 0.74 -0.5
1,956,793 + ytfB NIAGMN_09930 0.78 +0.5
1,956,794 - ytfB NIAGMN_09930 0.78 +1.0
1,956,916 + -0.2
1,956,916 + -0.5
1,956,980 + +0.2
1,956,980 + -0.4
1,956,980 + +1.3
1,956,980 + -0.1
1,956,980 + +0.3
1,956,980 + +0.2
1,956,981 - +0.3
1,956,981 - +0.1
1,956,981 - -0.8
1,956,981 - +0.3
1,956,981 - -0.3
1,957,013 + -0.4
1,957,013 + +0.2
1,957,014 - +0.5
1,957,014 - -0.4
1,957,062 - -0.2
1,957,170 + +0.4
1,957,200 + insQ NIAGMN_09935 0.12 +0.9
1,957,200 + insQ NIAGMN_09935 0.12 -0.4
1,957,200 + insQ NIAGMN_09935 0.12 -0.3
1,957,200 + insQ NIAGMN_09935 0.12 -0.9
1,957,200 + insQ NIAGMN_09935 0.12 +0.0
1,957,201 - insQ NIAGMN_09935 0.12 +0.2
1,957,201 - insQ NIAGMN_09935 0.12 +0.3
1,957,203 - insQ NIAGMN_09935 0.12 -0.8
1,957,228 - insQ NIAGMN_09935 0.14 +0.6
1,957,258 - insQ NIAGMN_09935 0.17 +0.7
1,957,258 - insQ NIAGMN_09935 0.17 +0.3
1,957,529 + insQ NIAGMN_09935 0.40 -0.9
1,957,529 + insQ NIAGMN_09935 0.40 +0.9
1,957,529 + insQ NIAGMN_09935 0.40 -0.4
1,957,542 + insQ NIAGMN_09935 0.41 +1.8
1,957,621 + insQ NIAGMN_09935 0.48 +1.3
1,957,622 - insQ NIAGMN_09935 0.48 -0.8
1,957,789 - insQ NIAGMN_09935 0.63 -0.4
1,957,796 + insQ NIAGMN_09935 0.64 +0.7
1,957,796 + insQ NIAGMN_09935 0.64 +0.7
1,957,796 + insQ NIAGMN_09935 0.64 -1.3
1,957,796 + insQ NIAGMN_09935 0.64 +1.0
1,957,797 - insQ NIAGMN_09935 0.64 +2.3
1,957,797 - insQ NIAGMN_09935 0.64 +0.4
1,957,797 - insQ NIAGMN_09935 0.64 +0.1
1,958,286 + +0.8
1,958,423 + tnpA NIAGMN_09940 0.33 -0.1
1,958,711 + +0.1
1,958,969 - -0.9

Or see this region's nucleotide sequence